WebParc: A tool for analysis of the topography and volume of stroke from MRI

Medical and Biological Engineering and Computing

Volumn 48, Issue 3, 2010, Pages 215-228

  Kennedy, David N ^a,b,c   Haselgrove, Christian ^a,b   Makris, Nikos ^b,c   Goldin, Donald M ^b   Lev, Michael H ^b,c   Caplan, David ^b,c   Caviness, Verne S ^b,c  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

Cerebral anatomy; Computer assisted; Embolism; Image processing; Magnetic resonance imaging; Stroke

Indexed keywords

ANATOMIC REGIONS; ANATOMIC STRUCTURES; CEREBRAL ANATOMY; CEREBRAL INFARCTION; CLINICAL CARE; CLINICAL IMAGING; CLINICAL RESEARCH; COMPUTATIONAL SYSTEM; COMPUTER ASSISTED; DIFFUSION WEIGHTED IMAGING; LESION SIZE; LINE OPERATIONS; NEURAL SYSTEMS; QUANTITATIVE ASSESSMENTS; REAL TIME ANALYSIS; STROKE LESIONS; WEB-BASED INTERFACE; WHITE MATTER;

IMAGING SYSTEMS; MAGNETIC RESONANCE; MAGNETIC RESONANCE IMAGING; MEDICAL IMAGING; MULTIMEDIA SYSTEMS;

IMAGE PROCESSING;

ADULT; ARTICLE; BRAIN MAPPING; COMPUTER ASSISTED DIAGNOSIS; COMPUTER INTERFACE; DIFFUSION WEIGHTED IMAGING; HOSPITAL INFORMATION SYSTEM; HUMAN; INTERNET; MALE; METHODOLOGY; OBSERVER VARIATION; PATHOLOGY; REPRODUCIBILITY; STROKE; VALIDATION STUDY;

ADULT; BRAIN MAPPING; DIFFUSION MAGNETIC RESONANCE IMAGING; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; INTERNET; MALE; OBSERVER VARIATION; RADIOLOGY INFORMATION SYSTEMS; REPRODUCIBILITY OF RESULTS; STROKE; USER-COMPUTER INTERFACE;

EID: 77649234622     PISSN: 01400118     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11517-009-0571-8     Document Type: Article

References (67)

1. AG Sorensen O Wu WA Copen TL Davis RG Gonzalez WJ Koroshetz TG Reese BR Rosen VJ Wedeen RM Weisskoff 1999 Human acute cerebral ischemia: detection of changes in water diffusion anisotropy by using MR imaging Radiology 212 785 792
2. AG Sorensen WA Copen L Ostergaard FS Buonanno RG Gonzalez G Rordorf BR Rosen LH Schwamm RM Weisskoff WJ Koroshetz 1999 Hyperacute stroke: simultaneous measurement of relative cerebral blood volume, relative cerebral blood flow, and mean tissue transit time Radiology 210 519 527
3. LH Schwamm WJ Koroshetz AG Sorensen B Wang WA Copen R Budzik G Rordorf FS Buonanno PW Schaefer RG Gonzalez 1998 Time course of lesion development in patients with acute stroke: serial diffusion- and hemodynamic-weighted magnetic resonance imaging Stroke 29 2268 2276
4. PW Schaefer GJ Hunter J He LM Hamberg AG Sorensen LH Schwamm WJ Koroshetz RG Gonzalez 2002 Predicting cerebral ischemic infarct volume with diffusion and perfusion MR imaging AJNR Am J Neuroradiol 23 1785 1794
5. CS Rivers JM Wardlaw PA Armitage ME Bastin TK Carpenter V Cvoro PJ Hand MS Dennis 2006 Do acute diffusion- and perfusion-weighted MRI lesions identify final infarct volume in ischemic stroke? Stroke 37 98 104 10.1161/01.STR. 0000195197.66606.bb (Pubitemid 43732055)
6. KO Lovblad AE Baird G Schlaug A Benfield B Siewert B Voetsch A Connor C Burzynski RR Edelman S Warach 1997 Ischemic lesion volumes in acute stroke by diffusion-weighted magnetic resonance imaging correlate with clinical outcome Ann Neurol 42 164 170 10.1002/ana.410420206 (Pubitemid 27340460)
7. G Sulter C Steen J De Keyser 1999 Use of the Barthel index and modified Rankin scale in acute stroke trials Stroke 30 1538 1541
8. AE Baird J Dashe A Connor C Burzynski G Schlaug S Warach 2000 Comparison of retrospective and prospective measurements of the national institutes of health stroke scale Cerebrovasc Dis 10 80 81 10.1159/000016031 (Pubitemid 30034864)
9. VN Thijs MG Lansberg C Beaulieu MP Marks ME Moseley GW Albers 2000 Is early ischemic lesion volume on diffusion-weighted imaging an independent predictor of stroke outcome? A multivariable analysis Stroke 31 2597 2602
10. PJ Hand JM Wardlaw CS Rivers PA Armitage ME Bastin RI Lindley MS Dennis 2006 MR diffusion-weighted imaging and outcome prediction after ischemic stroke Neurology 66 1159 1163 10.1212/01.wnl.0000202524.43850.81 (Pubitemid 43739696)
11. Group NIoNDaSRTPSS 1995 Tissue plasminogen activator for acute ischemic stroke N Engl J Med 333 1581 1587 10.1056/NEJM199512143332401
12. RT Higashida AJ Furlan H Roberts T Tomsick B Connors J Barr W Dillon S Warach J Broderick B Tilley D Sacks 2003 Trial design and reporting standards for intra-arterial cerebral thrombolysis for acute ischemic stroke Stroke 34 e109 e137 10.1161/01.STR.0000082721.62796.09
13. GJ del Zoppo RT Higashida AJ Furlan MS Pessin HA Rowley M Gent 1998 PROACT: a phase II randomized trial of recombinant pro-urokinase by direct arterial delivery in acute middle cerebral artery stroke. PROACT investigators. Prolyse in acute cerebral thromboembolism Stroke 29 4 11
14. A Furlan R Higashida L Wechsler M Gent H Rowley C Kase M Pessin A Ahuja F Callahan WM Clark F Silver F Rivera 1999 Intra-arterial prourokinase for acute ischemic stroke. The PROACT II study: a randomized controlled trial. Prolyse in acute cerebral thromboembolism JAMA 282 2003 2011 10.1001/jama.282.21.2003
15. RL Mani RL Eisenberg EJ McDonald Jr JA Pollock JR Mani 1978 Complications of catheter cerebral arteriography: analysis of 5,000 procedures. I. Criteria and incidence AJR Am J Roentgenol 131 861 865
16. IO Skalpe 1988 Complications in cerebral angiography with iohexol (omnipaque) and meglumine metrizoate (isopaque cerebral) Neuroradiology 30 69 72 10.1007/BF00341947
17. JE Heiserman BL Dean JA Hodak RA Flom CR Bird BP Drayer EK Fram 1994 Neurologic complications of cerebral angiography AJNR Am J Neuroradiol 15 1401 1407 discussion 1408-1411
18. JR Waugh N Sacharias 1992 Arteriographic complications in the DSA era Radiology 182 243 246
19. AG Dyker KR Lees 1998 Duration of neuroprotective treatment for ischemic stroke Stroke 29 535 542
20. J McCulloch D Dewar 2001 A radical approach to stroke therapy Proc Natl Acad Sci USA 98 10989 10991 10.1073/pnas.211430898 (Pubitemid 32928671)
21. J McCulloch 1992 Excitatory amino acid antagonists and their potential for the treatment of ischaemic brain damage in man Br J Clin Pharmacol 34 106 114
22. S Jonas V Aiyagari D Vieira M Figueroa 2001 The failure of neuronal protective agents versus the success of thrombolysis in the treatment of ischemic stroke. The predictive value of animal models Ann N Y Acad Sci 939 257 267
23. AB Singhal EH Lo T Dalkara MA Moskowitz 2005 Advances in stroke neuroprotection: hyperoxia and beyond Neuroimaging Clin N Am 15 697 720 10.1016/j.nic.2005.08.014 xii-xiii (Pubitemid 41796948)
24. CS Rivers JM Wardlaw PA Armitage ME Bastin TK Carpenter V Cvoro PJ Hand MS Dennis 2006 Persistent infarct hyperintensity on diffusion-weighted imaging late after stroke indicates heterogeneous, delayed, infarct evolution Stroke 37 1418 1423 10.1161/01.STR.0000221294.90068.c4 (Pubitemid 44305719)
25. MG Lansberg MW O'Brien DC Tong ME Moseley GW Albers 2001 Evolution of cerebral infarct volume assessed by diffusion-weighted magnetic resonance imaging Arch Neurol 58 613 617 10.1001/archneur.58.4.613
26. JD Eastwood MH Lev JM Provenzale 2003 Perfusion CT with iodinated contrast material AJR Am J Roentgenol 180 3 12
27. AE Baird A Benfield G Schlaug B Siewert KO Lovblad RR Edelman S Warach 1997 Enlargement of human cerebral ischemic lesion volumes measured by diffusion-weighted magnetic resonance imaging Ann Neurol 41 581 589 10.1002/ana.410410506 (Pubitemid 27212651)
28. P Barber D Darby P Desmond Q Yang R Gerraty D Jolley G Donnan B Tress S Davis 1998 Prediction of stroke outcome with echoplanar perfusion- and diffusion-weighted MRI Neurology 51 418 426
29. T Neumann-Haefelin HJ Wittsack F Wenserski M Siebler RJ Seitz U Modder HJ Freund 1999 Diffusion- and perfusion-weighted MRI. The DWI/PWI mismatch region in acute stroke Stroke 30 1591 1597
30. VS Caviness N Makris E Montinaro NT Sahin JF Bates L Schwamm D Caplan DN Kennedy 2002 Anatomy of stroke, part II: volumetric characteristics with implications for the local architecture of the cerebral perfusion system Stroke 33 2557 2564 10.1161/01.STR.0000036084.82955.C7 (Pubitemid 35266423)
31. VS Caviness N Makris E Montinaro NT Sahin JF Bates L Schwamm D Caplan DN Kennedy 2002 Anatomy of stroke, part I: an MRI-based topographic and volumetric system of analysis Stroke 33 2549 2556 10.1161/01.STR.0000036083.90045.08 (Pubitemid 35266422)
32. J Bogousslavsky G Van Melle F Regli 1988 The Lausanne Stroke Registry: analysis of 1,000 consecutive patients with first stroke Stroke 19 1083 1092
33. L Caplan V Babikian C Helgason DB Hier D DeWitt D Patel R Stein 1985 Occlusive disease of the middle cerebral artery Neurology 35 975 982
34. M Catani DH ffytche 2005 The rises and falls of disconnection syndromes Brain 128 2224 2239 10.1093/brain/awh622 (Pubitemid 41407963)
35. N Geschwind 1965 Disconnexion syndromes in animals and man. I Brain 88 237 294 10.1093/brain/88.2.237
36. N Geschwind 1965 Disconnexion syndromes in animals and man. II Brain 88 585 644 10.1093/brain/88.3.585
37. MM Mesulam 1998 From sensation to cognition Brain 121 Pt 6 1013 1052 10.1093/brain/121.6.1013 (Pubitemid 28257716)
38. MM Mesulam 1990 Large-scale neurocognitive networks and distributed processing for attention, language, and memory Ann Neurol 28 597 613 10.1002/ana.410280502
39. NM Menezes H Ay M Wang Zhu CJ Lopez AB Singhal JO Karonen HJ Aronen Y Liu J Nuutinen WJ Koroshetz AG Sorensen 2007 The real estate factor: quantifying the impact of infarct location on stroke severity Stroke 38 194 197 10.1161/01.STR.0000251792.76080.45 (Pubitemid 46035628)
40. M Bilello Z Lao J Krejza AE Hillis EH Herskovits 2006 Statistical atlas of acute stroke from magnetic resonance diffusion-weighted-images of the brain Neuroinformatics 4 235 242 10.1385/NI:4:3:235 (Pubitemid 44337237)
41. SI Letovsky SH Whitehead CH Paik GA Miller J Gerber EH Herskovits TK Fulton RN Bryan 1998 A brain image database for structure/function analysis AJNR Am J Neuroradiol 19 1869 1877
42. H Ay EM Arsava WJ Koroshetz AG Sorensen 2008 Middle cerebral artery infarcts encompassing the insula are more prone to growth Stroke 39 373 378 10.1161/STROKEAHA.107.499095 (Pubitemid 351619458)
43. WL Nowinski G Qian BP Kirgaval Nagaraja A Thirunavuukarasuu Q Hu N Ivanov AS Parimal VM Runge NJ Beauchamp 2006 Analysis of ischemic stroke MR images by means of brain atlases of anatomy and blood supply territories Acad Radiol 13 1025 1034 10.1016/j.acra.2006.05.009 (Pubitemid 44037465)
44. W Nowinski G Qian K Bhanu Prakash I Volkau Q Hu A Thirunavuukarasuu N Ivanov A Parimal Y Qiao A Ananthasubramaniam S Huang V Runge N Beauchamp 2006 Design and development of a computer aided diagnosis system for processing of acute ischemic stroke MR images WSEAS Trans Biol Biomed 3 401 407
45. W Nowinski G Qian K Bhanu Prakash I Volkau A Thirunavuukarasuu Q Hu A Ananthasubramaniam J Liu V Gupta T Ng W Leong N Beauchamp 2007 A CAD system for acute ischemic stroke image processing Int J Comput Assist Radiol Surg 2 220 222 10.1007/s11548-007-0132-2
46. J Mazziotta A Toga A Evans P Fox J Lancaster K Zilles R Woods T Paus G Simpson B Pike C Holmes L Collins P Thompson D MacDonald M Iacoboni T Schormann K Amunts N Palomero-Gallagher S Geyer L Parsons K Narr N Kabani G Le Goualher D Boomsma T Cannon R Kawashima B Mazoyer 2001 A probabilistic atlas and reference system for the human brain: international consortium for brain mapping (ICBM) Philos Trans R Soc Lond B Biol Sci 356 1293 1322 10.1098/rstb.2001.0915 (Pubitemid 32876067)
47. DL Collins CJ Holmes TM Peters AC Evans 1995 Automatic 3D model-based neuroanatomical segmentation Hum Brain Mapp 3 190 208 10.1002/hbm.460030304
48. SM Moore DE Beecher SA Hoffman 2003 DICOM shareware: a public implementation of the DICOM standard Proc SPIE 2165 772 10.1117/12.174371
49. PA Filipek C Richelme DN Kennedy VS Caviness Jr 1994 The young adult human brain: an MRI-based morphometric analysis Cereb Cortex 4 344 360 10.1093/cercor/4.4.344
50. PA Filipek DN Kennedy VS Caviness Jr SL Rossnick TA Spraggins PM Starewicz 1989 Magnetic resonance imaging-based brain morphometry: development and application to normal subjects Ann Neurol 25 61 67 10.1002/ana.410250110 (Pubitemid 19032844)
51. VS Caviness N Makris J Meyer D Kennedy 1996 MRI-based parcellation of human neocortex: an anatomically specified method with estimate of reliability J Cogn Neurosci 8 566 588 10.1162/jocn.1996.8.6.566
52. J Rademacher AM Galaburda DN Kennedy PA Filipek V Caviness 1992 Human cerebral cortex: localization, parcellation, and morphometry with magnetic resonance imaging J Cogn Neurosci 4 352 374 10.1162/jocn.1992.4.4.352
53. AM Dale B Fischl MI Sereno 1999 Cortical surface-based analysis. I. Segmentation and surface reconstruction Neuroimage 9 179 194 10.1006/nimg.1998.0395 (Pubitemid 29369874)
54. SM Smith 2002 Fast robust automated brain extraction Hum Brain Mapp 17 143 155 10.1002/hbm.10062 (Pubitemid 35253488)
55. SM Smith M Jenkinson MW Woolrich CF Beckmann TE Behrens H Johansen-Berg PR Bannister M De Luca I Drobnjak DE Flitney RK Niazy J Saunders J Vickers Y Zhang N De Stefano JM Brady PM Matthews 2004 Advances in functional and structural MR image analysis and implementation as FSL Neuroimage 23 Suppl 1 S208 S219 10.1016/j.neuroimage.2004.07.051 (Pubitemid 39421720)
56. AJ Worth N Makris VS Caviness Jr DN Kennedy 1997 Neuroanatomical segmentation in MRI: technological objectives Int J Pattern Recognit Artif Intell 11 1161 1187 10.1142/S0218001497000548
57. M Luby JL Bykowski PD Schellinger JG Merino S Warach 2006 Intra- and interrater reliability of ischemic lesion volume measurements on diffusion-weighted, mean transit time and fluid-attenuated inversion recovery MRI Stroke 37 2951 2956 10.1161/01.STR.0000249416.77132.1a (Pubitemid 44900815)
58. Hevia-Montiel N, Jimenez-Alaniz JR, Medina-Banuelos V, Yanez-Suarez O, Rosso C, Samson Y, Baillet S (2007) Robust nonparametric segmentation of infarct lesion from diffusion-weighted MR images. In: Conf Proc IEEE Eng Med Biol Soc, pp 2102-2105
59. W Li J Tian E Li J Dai 2004 Robust unsupervised segmentation of infarct lesion from diffusion tensor MR images using multiscale statistical classification and partial volume voxel reclassification Neuroimage 23 1507 1518 10.1016/j.neuroimage.2004.08.009 (Pubitemid 40260373)
60. P Hellier C Barillot I Corouge B Gibaud G Le Goualher DL Collins A Evans G Malandain N Ayache GE Christensen HJ Johnson 2003 Retrospective evaluation of intersubject brain registration IEEE Trans Med Imaging 22 1120 1130 10.1109/TMI.2003.816961
61. N Makris SM Hodge C Haselgrove DN Kennedy A Dale B Fischl BR Rosen G Harris VS Caviness Jr JD Schmahmann 2003 Human cerebellum: surface-assisted cortical parcellation and volumetry with magnetic resonance imaging J Cogn Neurosci 15 584 599 10.1162/089892903321662967 (Pubitemid 36530092)
62. LH Kuller AM Arnold WT Longstreth Jr TA Manolio DH O'Leary GL Burke LP Fried AB Newman 2007 White matter grade and ventricular volume on brain MRI as markers of longevity in the cardiovascular health study Neurobiol Aging 28 1307 1315 10.1016/j.neurobiolaging.2006.06.010 (Pubitemid 47081226)
63. R Au JM Massaro PA Wolf ME Young A Beiser S Seshadri RB D'Agostino C DeCarli 2006 Association of white matter hyperintensity volume with decreased cognitive functioning: the Framingham Heart Study Arch Neurol 63 246 250 10.1001/archneur.63.2.246 (Pubitemid 43261736)
64. CM Fisher 1989 Binswanger's encephalopathy: a review J Neurol 236 65 79 10.1007/BF00314400 (Pubitemid 19110221)
65. H Ay EM Arsava J Rosand KL Furie AB Singhal PW Schaefer O Wu RG Gonzalez WJ Koroshetz AG Sorensen 2008 Severity of leukoaraiosis and susceptibility to infarct growth in acute stroke Stroke 39 1409 1413 10.1161/STROKEAHA.107.501932
66. DJ Gladstone SE Black AM Hakim 2002 Toward wisdom from failure: lessons from neuroprotective stroke trials and new therapeutic directions Stroke 33 2123 2136 10.1161/01.STR.0000025518.34157.51 (Pubitemid 34840080)
67. MD Ginsberg 2003 Adventures in the pathophysiology of brain ischemia: penumbra, gene expression, neuroprotection: the 2002 Thomas Willis lecture Stroke 34 214 223 10.1161/01.STR.0000048846.09677.62 (Pubitemid 36070826)