-
1
-
-
34447521460
-
Human disease classification in the postgenomic era: A complex systems approach to human pathobiology
-
Loscalzo J, Kohane I, Barabasi AL (2007) Human disease classification in the postgenomic era: a complex systems approach to human pathobiology. Mol Syst Biol 3: 124.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 124
-
-
Loscalzo, J.1
Kohane, I.2
Barabasi, A.L.3
-
2
-
-
40049098166
-
Cumulative association of five genetic variants with prostate cancer
-
Zheng SL, Sun J, Wiklund F, Smith S, Stattin P, et al. (2008) Cumulative association of five genetic variants with prostate cancer. N Engl J Med 358: 910-919.
-
(2008)
N Engl J Med
, vol.358
, pp. 910-919
-
-
Zheng, S.L.1
Sun, J.2
Wiklund, F.3
Smith, S.4
Stattin, P.5
-
3
-
-
31144459985
-
Oncogenic pathway signatures in human cancers as a guide to targeted therapies
-
Bild AH, Yao G, Chang JT, Wang Q, Potti A, et al. (2006) Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature 439: 353-357.
-
(2006)
Nature
, vol.439
, pp. 353-357
-
-
Bild, A.H.1
Yao, G.2
Chang, J.T.3
Wang, Q.4
Potti, A.5
-
4
-
-
77649203151
-
The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile
-
Kon OL, Yip TT, Ho MF, Chan WH, Wong WK, et al. (2008) The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile. BMC Med Genomics 1: 54.
-
(2008)
BMC Med Genomics
, vol.1
, pp. 54
-
-
Kon, O.L.1
Yip, T.T.2
Ho, M.F.3
Chan, W.H.4
Wong, W.K.5
-
5
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
-
6
-
-
41649092988
-
Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer
-
Acharya CR, Hsu DS, Anders CK, Anguiano A, Salter KH, et al. (2008) Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. JAMA 299: 1574-1587.
-
(2008)
JAMA
, vol.299
, pp. 1574-1587
-
-
Acharya, C.R.1
Hsu, D.S.2
Anders, C.K.3
Anguiano, A.4
Salter, K.H.5
-
8
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
Chuang HY, Lee E, Liu YT, Lee D, Ideker T (2007) Network-based classification of breast cancer metastasis. Mol Syst Biol 3: 140.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
9
-
-
57149092133
-
-
Lee E, Chuang HY, Kim JW, Ideker T, Lee D (2008) Inferring pathway activity toward precise disease classification. PLoS Comput Biol 4: e1000217.
-
Lee E, Chuang HY, Kim JW, Ideker T, Lee D (2008) Inferring pathway activity toward precise disease classification. PLoS Comput Biol 4: e1000217.
-
-
-
-
10
-
-
49449083937
-
Metabolic profiling of the human response to a glucose challenge reveals distinct axes of insulin sensitivity
-
Shaham O, Wei R, Wang TJ, Ricciardi C, Lewis GD, et al. (2008) Metabolic profiling of the human response to a glucose challenge reveals distinct axes of insulin sensitivity. Mol Syst Biol 4: 214.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 214
-
-
Shaham, O.1
Wei, R.2
Wang, T.J.3
Ricciardi, C.4
Lewis, G.D.5
-
11
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, et al. (2007) Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci U S A 104: 1777-1782.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
-
12
-
-
46249128543
-
Identifying functional modules in protein-protein interaction networks: An integrated exact approach
-
Dittrich MT, Klau GW, Rosenwald A, Dandekar T, Muller T (2008) Identifying functional modules in protein-protein interaction networks: an integrated exact approach. Bioinformatics 24: i223-231.
-
(2008)
Bioinformatics
, vol.24
, Issue.I223-231
-
-
Dittrich, M.T.1
Klau, G.W.2
Rosenwald, A.3
Dandekar, T.4
Muller, T.5
-
13
-
-
0000801240
-
Discovering regulatory and signalling circuits in molecular interaction networks
-
Ideker T, Ozier O, Schwikowski B, Siegel AF (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 18 Suppl 1: S233-240.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Ideker, T.1
Ozier, O.2
Schwikowski, B.3
Siegel, A.F.4
-
14
-
-
0347513219
-
Characterizing gene sets with FuncAssociate
-
Berriz GF, King OD, Bryant B, Sander C, Roth FP (2003) Characterizing gene sets with FuncAssociate. Bioinformatics 19: 2502-2504.
-
(2003)
Bioinformatics
, vol.19
, pp. 2502-2504
-
-
Berriz, G.F.1
King, O.D.2
Bryant, B.3
Sander, C.4
Roth, F.P.5
-
15
-
-
33144474263
-
Unraveling the complexity of flux regulation: A new method demonstrated for nutrient starvation in Saccharomyces cerevisiae
-
Rossell S, van der Weijden CC, Lindenbergh A, van Tuijl A, Francke C, et al. (2006) Unraveling the complexity of flux regulation: a new method demonstrated for nutrient starvation in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 103: 2166-2171.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2166-2171
-
-
Rossell, S.1
van der Weijden, C.C.2
Lindenbergh, A.3
van Tuijl, A.4
Francke, C.5
-
16
-
-
25444448724
-
Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection
-
Reiss DJ, Avila-Campillo I, Thorsson V, Schwikowski B, Galitski T (2005) Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection. BMC Bioinformatics 6: 154.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 154
-
-
Reiss, D.J.1
Avila-Campillo, I.2
Thorsson, V.3
Schwikowski, B.4
Galitski, T.5
-
17
-
-
36849021779
-
Discovering regulated networks during HIV-1 latency and reactivation
-
Bandyopadhyay S, Kelley R, Ideker T (2006) Discovering regulated networks during HIV-1 latency and reactivation. Pac Symp Biocomput. pp 354-366.
-
(2006)
Pac Symp Biocomput
, pp. 354-366
-
-
Bandyopadhyay, S.1
Kelley, R.2
Ideker, T.3
-
18
-
-
14544268137
-
Uncovering transcriptional regulation of metabolism by using metabolic network topology
-
Patil KR, Nielsen J (2005) Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc Natl Acad Sci U S A 102: 2685-2689.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 2685-2689
-
-
Patil, K.R.1
Nielsen, J.2
-
19
-
-
51349092391
-
Network-based prediction of human tissue-specific metabolism
-
Shlomi T, Cabili MN, Herrgard MJ, Palsson BO, Ruppin E (2008) Network-based prediction of human tissue-specific metabolism. Nat Biotechnol 26: 1003-1010.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1003-1010
-
-
Shlomi, T.1
Cabili, M.N.2
Herrgard, M.J.3
Palsson, B.O.4
Ruppin, E.5
-
21
-
-
0024396879
-
Effects of insulin on kidney function and sodium excretion in healthy subjects
-
Skott P, Hother-Nielsen O, Bruun NE, Giese J, Nielsen MD, et al. (1989) Effects of insulin on kidney function and sodium excretion in healthy subjects. Diabetologia 32: 694-699.
-
(1989)
Diabetologia
, vol.32
, pp. 694-699
-
-
Skott, P.1
Hother-Nielsen, O.2
Bruun, N.E.3
Giese, J.4
Nielsen, M.D.5
-
22
-
-
38349170961
-
Amino acid transport across mammalian intestinal and renal epithelia
-
Broer S (2008) Amino acid transport across mammalian intestinal and renal epithelia. Physiol Rev 88: 249-286.
-
(2008)
Physiol Rev
, vol.88
, pp. 249-286
-
-
Broer, S.1
-
23
-
-
33845973399
-
Amino acid transporter ATA2 is stored at the trans-Golgi network and released by insulin stimulus in adipocytes
-
Hatanaka T, Hatanaka Y, Tsuchida J, Ganapathy V, Setou M (2006) Amino acid transporter ATA2 is stored at the trans-Golgi network and released by insulin stimulus in adipocytes. J Biol Chem 281: 39273-39284.
-
(2006)
J Biol Chem
, vol.281
, pp. 39273-39284
-
-
Hatanaka, T.1
Hatanaka, Y.2
Tsuchida, J.3
Ganapathy, V.4
Setou, M.5
-
24
-
-
34547124353
-
Distinct sensor pathways in the hierarchical control of SNAT2, a putative amino acid transceptor, by amino acid availability
-
Hyde R, Cwiklinski EL, MacAulay K, Taylor PM, Hundal HS (2007) Distinct sensor pathways in the hierarchical control of SNAT2, a putative amino acid transceptor, by amino acid availability. J Biol Chem 282: 19788-19798.
-
(2007)
J Biol Chem
, vol.282
, pp. 19788-19798
-
-
Hyde, R.1
Cwiklinski, E.L.2
MacAulay, K.3
Taylor, P.M.4
Hundal, H.S.5
-
26
-
-
63649144144
-
The phosphatidylinositol 3-kinase/akt cassette regulates purine nucleotide synthesis
-
Wang W, Fridman A, Blackledge W, Connelly S, Wilson IA, et al. (2009) The phosphatidylinositol 3-kinase/akt cassette regulates purine nucleotide synthesis. J Biol Chem 284: 3521-3528.
-
(2009)
J Biol Chem
, vol.284
, pp. 3521-3528
-
-
Wang, W.1
Fridman, A.2
Blackledge, W.3
Connelly, S.4
Wilson, I.A.5
-
27
-
-
1242295211
-
Synaptic uptake and beyond: The sodium- and chloride-dependent neurotransmitter transporter family SLC6
-
Chen NH, Reith ME, Quick MW (2004) Synaptic uptake and beyond: the sodium- and chloride-dependent neurotransmitter transporter family SLC6. Pflugers Arch 447: 519-531.
-
(2004)
Pflugers Arch
, vol.447
, pp. 519-531
-
-
Chen, N.H.1
Reith, M.E.2
Quick, M.W.3
-
28
-
-
11244327723
-
Osmotic regulation of renal betaine transport: Transcription and beyond
-
Kempson SA, Montrose MH (2004) Osmotic regulation of renal betaine transport: transcription and beyond. Pflugers Arch 449: 227-234.
-
(2004)
Pflugers Arch
, vol.449
, pp. 227-234
-
-
Kempson, S.A.1
Montrose, M.H.2
-
29
-
-
0033546413
-
Functional characterization of the Betaine/gamma-aminobutyric acid transporter BGT-1 expressed in Xenopus oocytes
-
Matskevitch I, Wagner CA, Stegen C, Broer S, Noll B, et al. (1999) Functional characterization of the Betaine/gamma-aminobutyric acid transporter BGT-1 expressed in Xenopus oocytes. J Biol Chem 274: 16709-16716.
-
(1999)
J Biol Chem
, vol.274
, pp. 16709-16716
-
-
Matskevitch, I.1
Wagner, C.A.2
Stegen, C.3
Broer, S.4
Noll, B.5
-
30
-
-
1242317666
-
The mitochondrial transporter family (SLC25): Physiological and pathological implications
-
Palmieri F (2004) The mitochondrial transporter family (SLC25): physiological and pathological implications. Pflugers Arch 447: 689-709.
-
(2004)
Pflugers Arch
, vol.447
, pp. 689-709
-
-
Palmieri, F.1
-
31
-
-
0036299910
-
Mitochondrial aspartate glutamate carrier (citrin) deficiency as the cause of adult-onset type II citrullinemia (CTLN2) and idiopathic neonatal hepatitis (NICCD)
-
Saheki T, Kobayashi K (2002) Mitochondrial aspartate glutamate carrier (citrin) deficiency as the cause of adult-onset type II citrullinemia (CTLN2) and idiopathic neonatal hepatitis (NICCD). J Hum Genet 47: 333-341.
-
(2002)
J Hum Genet
, vol.47
, pp. 333-341
-
-
Saheki, T.1
Kobayashi, K.2
-
32
-
-
33646854728
-
Hepatic steatosis and neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD) in Taiwanese infants
-
Yeh JN, Jeng YM, Chen HL, Ni YH, Hwu WL, et al. (2006) Hepatic steatosis and neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD) in Taiwanese infants. J Pediatr 148: 642-646.
-
(2006)
J Pediatr
, vol.148
, pp. 642-646
-
-
Yeh, J.N.1
Jeng, Y.M.2
Chen, H.L.3
Ni, Y.H.4
Hwu, W.L.5
-
33
-
-
34548337267
-
Citrin/mitochondrial glycerol-3-phosphate dehydrogenase double knock-out mice recapitulate features of human citrin deficiency
-
Saheki T, Iijima M, Li MX, Kobayashi K, Horiuchi M, et al. (2007) Citrin/mitochondrial glycerol-3-phosphate dehydrogenase double knock-out mice recapitulate features of human citrin deficiency. J Biol Chem 282: 25041-25052.
-
(2007)
J Biol Chem
, vol.282
, pp. 25041-25052
-
-
Saheki, T.1
Iijima, M.2
Li, M.X.3
Kobayashi, K.4
Horiuchi, M.5
-
34
-
-
45849089154
-
Reduced carbohydrate intake in citrin-deficient subjects
-
Saheki T, Kobayashi K, Terashi M, Ohura T, Yanagawa Y, et al. (2008) Reduced carbohydrate intake in citrin-deficient subjects. J Inherit Metab Dis 31: 386-394.
-
(2008)
J Inherit Metab Dis
, vol.31
, pp. 386-394
-
-
Saheki, T.1
Kobayashi, K.2
Terashi, M.3
Ohura, T.4
Yanagawa, Y.5
-
35
-
-
4344651581
-
Polymorphisms in the amino acid transporter solute carrier family 6 (neurotransmitter transporter) member 14 gene contribute to polygenic obesity in French Caucasians
-
Durand E, Boutin P, Meyre D, Charles MA, Clement K, et al. (2004) Polymorphisms in the amino acid transporter solute carrier family 6 (neurotransmitter transporter) member 14 gene contribute to polygenic obesity in French Caucasians. Diabetes 53: 2483-2486.
-
(2004)
Diabetes
, vol.53
, pp. 2483-2486
-
-
Durand, E.1
Boutin, P.2
Meyre, D.3
Charles, M.A.4
Clement, K.5
-
36
-
-
0347354997
-
The SLC6A14 gene shows evidence of association with obesity
-
Suviolahti E, Oksanen LJ, Ohman M, Cantor RM, Ridderstrale M, et al. (2003) The SLC6A14 gene shows evidence of association with obesity. J Clin Invest 112: 1762-1772.
-
(2003)
J Clin Invest
, vol.112
, pp. 1762-1772
-
-
Suviolahti, E.1
Oksanen, L.J.2
Ohman, M.3
Cantor, R.M.4
Ridderstrale, M.5
-
37
-
-
34249888775
-
Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels
-
Saxena R, Voight BF, Lyssenko V, Burtt NP, de Bakker PI, et al. (2007) Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels. Science 316: 1331-1336.
-
(2007)
Science
, vol.316
, pp. 1331-1336
-
-
Saxena, R.1
Voight, B.F.2
Lyssenko, V.3
Burtt, N.P.4
de Bakker, P.I.5
-
38
-
-
60549083544
-
An open access database of genome-wide association results
-
Johnson AD, O'Donnell CJ (2009) An open access database of genome-wide association results. BMC Med Genet 10: 6.
-
(2009)
BMC Med Genet
, vol.10
, pp. 6
-
-
Johnson, A.D.1
O'Donnell, C.J.2
-
39
-
-
63449111894
-
A branched-chain amino acid-related metabolic signature that differentiates obese and lean humans and contributes to insulin resistance
-
Newgard CB, An J, Bain JR, Muehlbauer MJ, Stevens RD, et al. (2009) A branched-chain amino acid-related metabolic signature that differentiates obese and lean humans and contributes to insulin resistance. Cell Metab 9: 311-326.
-
(2009)
Cell Metab
, vol.9
, pp. 311-326
-
-
Newgard, C.B.1
An, J.2
Bain, J.R.3
Muehlbauer, M.J.4
Stevens, R.D.5
-
40
-
-
60149091657
-
Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression
-
Sreekumar A, Poisson LM, Rajendiran TM, Khan AP, Cao Q, et al. (2009) Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature 457: 910-914.
-
(2009)
Nature
, vol.457
, pp. 910-914
-
-
Sreekumar, A.1
Poisson, L.M.2
Rajendiran, T.M.3
Khan, A.P.4
Cao, Q.5
-
41
-
-
0018612858
-
An investigation of coronary heart disease in families. The Framingham offspring study
-
Kannel WB, Feinleib M, McNamara PM, Garrison RJ, Castelli WP (1979) An investigation of coronary heart disease in families. The Framingham offspring study. Am J Epidemiol 110: 281-290.
-
(1979)
Am J Epidemiol
, vol.110
, pp. 281-290
-
-
Kannel, W.B.1
Feinleib, M.2
McNamara, P.M.3
Garrison, R.J.4
Castelli, W.P.5
-
42
-
-
0038156106
-
Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values
-
Pounds S, Morris SW (2003) Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values. Bioinformatics 19: 1236-1242.
-
(2003)
Bioinformatics
, vol.19
, pp. 1236-1242
-
-
Pounds, S.1
Morris, S.W.2
|