메뉴 건너뛰기




Volumn 399, Issue 1, 2010, Pages 110-117

Identification of RNA linkage isomers by anion exchange purification with electrospray ionization mass spectrometry of automatically desalted phosphodiesterase-II digests

Author keywords

2 5 Linkage identification; Aberrant linkage identification; Anion exchange HPLC; ESI MS; Linkage isomers; Oligonucleotide desalting; Polymer monolith; RNA purification

Indexed keywords

DESALINATION; DRUG PRODUCTS; ELECTRODEPOSITION; ELECTROSPRAY IONIZATION; ESTERS; IONS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; OLIGONUCLEOTIDES; PLANTS (BOTANY); PURIFICATION; RNA;

EID: 77649188794     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2009.11.009     Document Type: Article
Times cited : (25)

References (26)
  • 1
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire A., Xu S.Q., Montgomery M.K., Kostas S.A., Driver S.E., Mello C.C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998, 391:806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.Q.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 2
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir S.M., Harborth J., Lendeckel W., Yalcin A., Weber K., Tuschl T. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 2001, 411:494-498.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 3
    • 0035859929 scopus 로고    scopus 로고
    • Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems
    • Caplen N.J., Parrish S., Imani F., Fire A., Morgan R.A. Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems. Proc. Natl. Acad. Sci. USA 2001, 98:9742-9747.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9742-9747
    • Caplen, N.J.1    Parrish, S.2    Imani, F.3    Fire, A.4    Morgan, R.A.5
  • 4
    • 0028877084 scopus 로고
    • Phosphoryl migration during the chemical synthesis of RNA
    • Morgan M.A., Kazakov S.A., Hecht S.M. Phosphoryl migration during the chemical synthesis of RNA. Nucleic Acids Res. 1995, 23:3949-3953.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3949-3953
    • Morgan, M.A.1    Kazakov, S.A.2    Hecht, S.M.3
  • 6
    • 0024519705 scopus 로고
    • Highly efficient chemical synthesis of 2′-O-methyloligoribonucleotides and tetrabiotinylated derivatives: Novel probes that are resistant to degradation by RNA or DNA specific nucleases
    • Sproat B.S., Lamond A.I., Beijer B., Neuner P., Ryder U. Highly efficient chemical synthesis of 2′-O-methyloligoribonucleotides and tetrabiotinylated derivatives: Novel probes that are resistant to degradation by RNA or DNA specific nucleases. Nucleic Acids Res. 1989, 17:3373-3386.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 3373-3386
    • Sproat, B.S.1    Lamond, A.I.2    Beijer, B.3    Neuner, P.4    Ryder, U.5
  • 7
    • 0024202897 scopus 로고
    • Inhibition of deoxyribonucleases by phosphorothioate groups in oligodeoxyribonucleotides
    • Spitzer S., Eckstein F. Inhibition of deoxyribonucleases by phosphorothioate groups in oligodeoxyribonucleotides. Nucleic Acids Res. 1988, 16:11691-11704.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 11691-11704
    • Spitzer, S.1    Eckstein, F.2
  • 9
    • 0033570216 scopus 로고    scopus 로고
    • Synthesis and properties of RNA analogs: oligoribonucleotide N3′→P5′ phosphoramidates
    • Matray T.J., Gryaznov S.M. Synthesis and properties of RNA analogs: oligoribonucleotide N3′→P5′ phosphoramidates. Nucleic Acids Res. 1999, 27:3976-3985.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3976-3985
    • Matray, T.J.1    Gryaznov, S.M.2
  • 10
    • 0030593859 scopus 로고    scopus 로고
    • Mixed backbone oligonucleotides containing internucleotidic primary phosphoramidate linkages
    • Devlin T., Iyer R.P., Johnson S., Agrawal S. Mixed backbone oligonucleotides containing internucleotidic primary phosphoramidate linkages. Bioorg. Med. Chem. Lett. 1996, 6:2663-2668.
    • (1996) Bioorg. Med. Chem. Lett. , vol.6 , pp. 2663-2668
    • Devlin, T.1    Iyer, R.P.2    Johnson, S.3    Agrawal, S.4
  • 12
    • 48849101527 scopus 로고    scopus 로고
    • Structural effects of internucleotide linkage modification at mismatch site in DNA/RNA duplex: Raman study
    • Kriz M., Nemecek D., Turpin P.-Y., Rosenberg I., Stepanek J. Structural effects of internucleotide linkage modification at mismatch site in DNA/RNA duplex: Raman study. Vibrat. Spectr. 2008, 48:148-152.
    • (2008) Vibrat. Spectr. , vol.48 , pp. 148-152
    • Kriz, M.1    Nemecek, D.2    Turpin, P.-Y.3    Rosenberg, I.4    Stepanek, J.5
  • 13
    • 0032750621 scopus 로고    scopus 로고
    • 2′-Carbohydrate modifications in antisense oligonucleotide therapy: importance of conformation, configuration, and conjugation
    • Manoharan M. 2′-Carbohydrate modifications in antisense oligonucleotide therapy: importance of conformation, configuration, and conjugation. Biochim. Biophys. Acta 1999, 1489:117-130.
    • (1999) Biochim. Biophys. Acta , vol.1489 , pp. 117-130
    • Manoharan, M.1
  • 14
    • 0035962892 scopus 로고    scopus 로고
    • A critical survey of the structure-function of the antisense oligo/RNA heteroduplex as substrate for RNase-H
    • Zamaratski E., Paradeepkumar P.I., Chattopadhyaya J. A critical survey of the structure-function of the antisense oligo/RNA heteroduplex as substrate for RNase-H. J. Biochem. Biophys. Methods 2001, 48:189-208.
    • (2001) J. Biochem. Biophys. Methods , vol.48 , pp. 189-208
    • Zamaratski, E.1    Paradeepkumar, P.I.2    Chattopadhyaya, J.3
  • 15
    • 0037733977 scopus 로고    scopus 로고
    • Antisense technologies: improvement through novel chemical modifications
    • Kurreck J. Antisense technologies: improvement through novel chemical modifications. Eur. J. Biochem. 2003, 270:1628-1644.
    • (2003) Eur. J. Biochem. , vol.270 , pp. 1628-1644
    • Kurreck, J.1
  • 17
    • 8844262560 scopus 로고    scopus 로고
    • RNA interference and chemically modified small interfering RNAs
    • Manoharan M. RNA interference and chemically modified small interfering RNAs. Curr. Opin. Chem. Biol. 2004, 8:570-579.
    • (2004) Curr. Opin. Chem. Biol. , vol.8 , pp. 570-579
    • Manoharan, M.1
  • 19
    • 0041331496 scopus 로고    scopus 로고
    • SiRNA function in RNAi: a chemical modification analysis
    • Chiu Y.-L., Rana T.M. SiRNA function in RNAi: a chemical modification analysis. RNA 2003, 9:1034-1048.
    • (2003) RNA , vol.9 , pp. 1034-1048
    • Chiu, Y.-L.1    Rana, T.M.2
  • 20
    • 0027445885 scopus 로고
    • Oligoribonucleotides containing 2′,5′-phosphodiester linkages exhibit binding selectivity for 3′,5′-RNA over 3′,5′-ssDNA
    • Giannaris P.A., Damha M.J. Oligoribonucleotides containing 2′,5′-phosphodiester linkages exhibit binding selectivity for 3′,5′-RNA over 3′,5′-ssDNA. Nucleic Acids Res. 1993, 21:4742-4749.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4742-4749
    • Giannaris, P.A.1    Damha, M.J.2
  • 22
    • 33846011902 scopus 로고    scopus 로고
    • Identification of aberrant 2′-5′ RNA linkage isomers by pellicular anion-exchange chromatography
    • Thayer J.R., Rao S., Puri N., Burnett C.A., Young M. Identification of aberrant 2′-5′ RNA linkage isomers by pellicular anion-exchange chromatography. Anal. Biochem. 2007, 361:132-139.
    • (2007) Anal. Biochem. , vol.361 , pp. 132-139
    • Thayer, J.R.1    Rao, S.2    Puri, N.3    Burnett, C.A.4    Young, M.5
  • 23
    • 58849147582 scopus 로고    scopus 로고
    • Detection of aberrant 2′-5′ linkages in RNA by anion-exchange
    • John Wiley, New York, S. Beaucage (Ed.)
    • Thayer J.R., Rao S., Puri N. Detection of aberrant 2′-5′ linkages in RNA by anion-exchange. Current Protocols in Nucleic Acid Chemistry 2008, 10.13.1-10.13.11. John Wiley, New York. S. Beaucage (Ed.).
    • (2008) Current Protocols in Nucleic Acid Chemistry
    • Thayer, J.R.1    Rao, S.2    Puri, N.3
  • 24
    • 2942512191 scopus 로고    scopus 로고
    • High-throughput analysis of oligonucleotides using automated electrospray ionization mass spectrometry
    • Hail M.E., Elliott B., Anderson K. High-throughput analysis of oligonucleotides using automated electrospray ionization mass spectrometry. Am. Biotechnol. Lab. 2004, 22:12-14.
    • (2004) Am. Biotechnol. Lab. , vol.22 , pp. 12-14
    • Hail, M.E.1    Elliott, B.2    Anderson, K.3
  • 25
    • 13644252225 scopus 로고    scopus 로고
    • Control of oligonucleotide retention on a pH-stabilized strong anion exchange column
    • Thayer J.R., Barreto V., Rao S., Pohl C. Control of oligonucleotide retention on a pH-stabilized strong anion exchange column. Anal. Biochem. 2005, 338:39-47.
    • (2005) Anal. Biochem. , vol.338 , pp. 39-47
    • Thayer, J.R.1    Barreto, V.2    Rao, S.3    Pohl, C.4
  • 26
    • 0021100299 scopus 로고
    • Biological activities of phosphodiester linkage isomers of 2-5A
    • Lesiak K., Imai J., Floyd-Smith G., Torrence P.F. Biological activities of phosphodiester linkage isomers of 2-5A. J. Biol. Chem. 1983, 258:13082-13088.
    • (1983) J. Biol. Chem. , vol.258 , pp. 13082-13088
    • Lesiak, K.1    Imai, J.2    Floyd-Smith, G.3    Torrence, P.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.