Survival of native Pseudomonas in soil and wheat rhizosphere and antagonist activity against plant pathogenic fungi

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 97, Issue 3, 2010, Pages 241-251

  Fischer, Sonia E ^a   Jofré, Edgardo C ^a   Cordero, Paula V ^a   Gutiérrez Mañero, Francisco J ^b   Mori, Gladys B ^a  

^a DEPARTAMENTO DE QUÍMICA   (Argentina)

^b UNIVERSIDAD SAN PABLO CEU   (Spain)

Author keywords

Biocontrol; PGPRs; Pseudomonas; Survival

Indexed keywords

DNA 16S; HYDROGEN CYANIDE; RIFAMPICIN; SIDEROPHORE;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIAL SURVIVAL; BACTERIAL VIABILITY; BIOLOGICAL PEST CONTROL; CELL DENSITY; CELL VIABILITY; CONTROLLED STUDY; CULTURE MEDIUM; DNA SEQUENCE; FUNGUS; GENE AMPLIFICATION; GROWTH INHIBITION; MYCELIAL GROWTH; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; PSEUDOMONAS; RHIZOSPHERE; SOIL MICROFLORA; WHEAT;

ANIMALS; ANTIBIOSIS; ANTIFUNGAL AGENTS; CLUSTER ANALYSIS; COLONY COUNT, MICROBIAL; DNA, BACTERIAL; DNA, RIBOSOMAL; FUNGI; MICROBIAL VIABILITY; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT GROWTH REGULATORS; PLANT ROOTS; PSEUDOMONAS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TRITICUM;

BACTERIA (MICROORGANISMS); FUNGI; PSEUDOMONAS; PSEUDOMONAS SP.; TRITICUM AESTIVUM;

EID: 77649181501     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-009-9405-9     Document Type: Article

References (39)

1. S Altschul F Stephen T Madden A Schäffer J Zhang Z Zhang W Miller D Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 10.1093/nar/25.17.3389 1:CAS:528:DyaK2sXlvFyhu7w%3D 9254694 (Pubitemid 27359211)
2. G Berg A Krechel M Ditz RA Sikora A Ulrich J Hallmann 2005 Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi FEMS Microbiol Ecol 51 215 229 10.1016/j.femsec.2004.08.006 1:CAS:528:DC%2BD2cXhtFGhtrrM 16329870 (Pubitemid 40038381)
3. R Costa NCM Gomes RS Peixoto N Rumjanek G Berg LCS Mendonça-Hagler K Smalla 2006 Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm Soil Biol Biochem 38 2434 2447 10.1016/j.soilbio.2006.03.003 1:CAS:528: DC%2BD28XotFyrsrY%3D (Pubitemid 44183858)
4. JT De Souza JM Raaijmakers 2003 Polymorphisms whithin the prnD and pltC genes from pyrrolnitrin and pyoluteorin- producing Pseudomonas and Burkholderia spp FEMS Microbiol Ecol 43 21 34 19719693
5. P Duquenne C Chenu G Richard G Catroux 1999 Effect of carbon source supply and its location on competition between inoculated and established bacterial strains in sterile soil microcosm FEMS Microbiol Ecol 29 331 339 10.1111/j.1574-6941.1999.tb00624.x 1:CAS:528:DyaK1MXls1ams7c%3D
6. SG Edwards 2004 Influence of agricultural practices on Fusarium infection of cereals and subsequent contamination of grain by trichothecene mycotoxins Toxicol Lett 153 29 35 10.1016/j.toxlet.2004.04.022 1:CAS:528: DC%2BD2cXntlGlt70%3D 15342078 (Pubitemid 39165746)
7. D Egamberdiyeva G Höflich 2003 Influence of growth-promoting bacteria on the growth of wheat in different soils and temperatures Soil Biol Biochem 35 973 978 10.1016/S0038-0717(03)00158-5 1:CAS:528:DC%2BD3sXkvVWjtbw%3D (Pubitemid 36821162)
8. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791 10.2307/2408678
9. SE Fischer SI Fischer S Magris G Mori 2007 Isolation and charaterization of bacteria from rhizosphere wheat World J Microbiol Biotechnol 23 895 903 10.1007/s11274-006-9312-4 1:CAS:528:DC%2BD2sXlvFartbs%3D (Pubitemid 46855400)
10. B Glick 1995 Review: the enhancement of plant gowth by free-living bacteria Can J Microbiol 41 109 117 10.1139/m95-015 1:CAS:528:DyaK2MXks1ygsrY%3D
11. L Hankin SL Anagnostakis 1977 Solid media containing carboxymethylcellulose to detect CX cellulose activity of micro-organisms J Gen Microbiol 98 109 115 1:CAS:528:DyaE2sXktVajurk%3D 401863
12. A Johansen IMB Knudsen SJ Binnerup A Winding JE Johansen LE Jensen KS Andersen MM Svenning TA Bonde 2005 Non-target effects of the microbial control agents Pseudomonas fluorescens DR54 and Clonostachys rosea IK726 in soils cropped with barley followed by sugar beet: a greenhouse assessment Soil Biol Biochem 37 2225 2239 10.1016/j.soilbio.2005.04.004 1:CAS:528:DC%2BD2MXhtlShsrfL (Pubitemid 41757550)
13. H Karlidag A Esitken M Turan F Sahin 2007 Effects of root inoculation of plant growth promoting rhizobacteria (PGPR) on yield, growth and nutrient element contents of leaves of apple Sci Horticult 114 16 20 10.1016/j.scienta. 2007.04.013 1:CAS:528:DC%2BD2sXpt1Sgtb8%3D (Pubitemid 47259602)
14. B Kumar P Trivedi A Pandey 2007 Pseudomonas corrugata: A suitable bacterial inoculant for maize grown under rainfed conditions of Himalayan region Soil Biol Biochem 39 3093 3100 10.1016/j.soilbio.2007.07.003 1:CAS:528:DC%2BD2sXhtVCns7vF (Pubitemid 47390986)
15. S Li C Jochum F Yu K Zaleta-Rivera L Du S Harris Y Yuen 2008 An antibiotic complex from Lysobacter enzymogenes strain C3: antimicrobial activity and role in plant disease control Phytopathology 98 695 701 10.1094/PHYTO-98-6-0695 1:STN:280:DC%2BD1cjlslKlsg%3D%3D 18944294 (Pubitemid 351913801)
16. B Lugtenberg F Kamilova 2009 Plant-growth-promoting rhizobacteria Annu Rev Microbiol 63 541 556 10.1146/annurev.micro.62.081307.162918 1:CAS:528:DC%2BD1MXhtlSitLnN 19575558
17. GBB McSpadden LJ Gutierrez R Joshi R Edema E Lutton 2005 Distribution and Biocontrol Potential of phlD + Pseudomonads in Corn and Soybean Fields Phytopathology 95 715 724 10.1094/PHYTO-95-0715 (Pubitemid 40764581)
18. L Molina C Ramos E Duque MC Ronchel JM García L Wyke JL Ramos 2000 Survival of Pseudomonas putida KT2440 in soil and in the rhizosphere of plants under greenhouse and environmental conditions Soil Biol Biochem 32 315 321 10.1016/S0038-0717(99)00156-X 1:CAS:528:DC%2BD3cXhs1Smt74%3D (Pubitemid 30121432)
19. CS Nautiyal 1997 Rhizosphere competence of Pseudomonas sp. NBRI9926 and Rhizobium sp. NBRI9513 involved in the suppression of chickpea (Cicer arietinum L.) pathogenic fungi FEMS Microbiol Ecol 23 145 158 10.1111/j.1574-6941.1997. tb00398.x 1:CAS:528:DyaK2sXkvFaksbw%3D
20. DJ O'Sullivan F O'Gara 1992 Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens Microbiol Rev 56 662 676 1480114
21. A Pandey E Sharma LMS Palni 1998 Influence of bacterial inoculation on maize in upland farming systems of the Sikkim Himalaya Soil Biol Biochem 30 379 384 10.1016/S0038-0717(97)00121-1 1:CAS:528:DyaK1cXhvFWrs70%3D (Pubitemid 28199127)
22. CL Pattern BR Glick 1996 Bacterial biosynthesis of indole-3-acetic acid Can J Microbiol 42 207 220
23. LH Purdy 1979 Sclerotinia sclerotiorum: history, diseases and symptomatology, host range, geographic distribution and impact Phytopathology 69 875 880 10.1094/Phyto-69-875
24. JM Raaijmakers DM Weller LS Thomashow 1997 Frequency of antibiotic-producing Pseudomonas spp. in natural environments Appl Environ Microbiol 63 881 887 1:CAS:528:DyaK2sXhsV2jtbk%3D 16535555
25. N Saitou M Nei 1987 The neighbor-joining method: A new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425 1:STN:280: DyaL1c7ovFSjsA%3D%3D 3447015
26. Shimahara K, Takiguchi Y (1988) Preparation of crustacean chitin. In: Wood WA, Kellog ST (eds) Methods in enzymology. Academic Press, San Diego, CA, pp 417-423
27. Sneh B, Lee B, Akira O (1991) Identification of Rhizoctonia Species. The American Phytophatological Society, St. Paul, Minnesota, USA, pp 129
28. M Svercel B Duffy G Défago 2007 PCR amplification of hydrogen cyanide biosynthetic locus hcnAB in Pseudomonas spp J Microbiol Meth 70 209 213 10.1016/j.mimet.2007.03.018 1:CAS:528:DC%2BD2sXmvVKlsrg%3D (Pubitemid 46964876)
29. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 10.1093/molbev/msm092 1:CAS:528:DC%2BD2sXpsVGrsL8%3D 17488738 (Pubitemid 47236692)
30. GA Turnbull JAW Morgan JM Whipps JR Saunders 2001 The role of bacterial motility in the survival and spread of Pseudomonas fluorescens in soil and in the attachment and colonisation of wheat roots FEMS Microbiol Ecol 36 21 31 10.1111/j.1574-6941.2001.tb00822.x 1:CAS:528:DC%2BD3MXjsleisL4%3D 11377770
31. van Elsas JD, van Overbeek LS (1993) Bacterial responses to soil stimuli. In: Kjelleberg S (ed) Starvation in bacteria. Plenum Press, New York, pp 55-79
32. L van Overbeek J van Veen J van Elsas 1997 Induced reporter gene activity, enhanced stress resistance, and competitive ability of a genetically modified Pseudomonas fluorescens strain released into a field plot planted with wheat Appl Environ Microbiol 63 1965 1973 16535606
33. J van Veen L van Overbeek J van Elsas 1997 Fate and activity of microorganisms introduced into soil Microbiol Mol Biol Rev 61 2 121 135 9184007
34. GA Walsh RA Murphy GF Killeen DR Headon RF Power 1995 Technical note: detection and quantification of supplemental fungal beta-glucanase activity in animal feed J Anim Sci 73 1074 1076 7628950
35. UF Walsh JP Morrissey F O'Gara 2001 Pseudomonas for biocontrol of phytopathogens: from functional genomics to commercial exploitation Curr Opin Biotechnol 12 289 295 10.1016/S0958-1669(00)00212-3 1:CAS:528: DC%2BD3MXkt12lu7Y%3D 11404107 (Pubitemid 32524341)
36. WG Weisburg SM Barns DA Pelletier DJ Lane 1991 16S ribosomal DNA amplification for phylogenetic study J Bacteriol 173 697 703 1:CAS:528:DyaK3MXhsl2lurY%3D 1987160
37. Whipps JM (1997) Ecological considerations involved in commercial development of biological control agents for soil-borne diseases. In: Van Elsas JD, Trevors JT, Wellington EMH (eds) Modern soil microbiology. Marcel Dekker, New York, pp 525-546
38. J Whipps 2001 Microbial interactions and biocontrol in the rhizosphere J Exp Bot 52 487 511 1:CAS:528:DC%2BD3MXjs1ajsrk%3D 11326055
39. F Widmer RJ Seidler PM Gillevet LS Watrud GD Di Giovanni 1998 A highly selective pcr protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples Appl Environ Microbiol 64 2545 2553 1:CAS:528:DyaK1cXkt1Ohu7g%3D 9647828