Mitochondrial phylogeography of the edible dormouse (glis glis) in the western palearctic region

Journal of Mammalogy

Volumn 91, Issue 1, 2010, Pages 233-242

  Hrner, Helene ^a   Krystufek, Boris ^b   Sar, Maurizio ^c   Ribas, Alexis ^d,e   Ruch, Tanja ^f,g   Sommer, Robert ^h   Ivashkina, Victoria ⁱ   Michaux, Johan R ^a,e  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b UNIVERSITY OF PRIMORSKA   (Slovenia)

^c UNIVERSITY OF PALERMO   (Italy)

^d Museu de GranollersCincies Naturals C/Francesc Maci   (Spain)

^e INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^f Ecological Research Centre   (Germany)

^g GOETHE UNIVERSITY   (Germany)

^h UNIVERSITY OF KIEL   (Germany)

ⁱ Zhiguli State Reserve   (Russian Federation)

Author keywords

Dormouse; Europe; Glacial refugia; Glis glis; Mitochondrial DNA; Phylogeography; Postglacial colonization

Indexed keywords

COLONIZATION; CYTOCHROME; GENE; GENETIC VARIATION; GLACIAL ENVIRONMENT; HIBERNATION; MITOCHONDRIAL DNA; PALEARCTIC REGION; PHYLOGEOGRAPHY; POPULATION BOTTLENECK; POSTGLACIAL; REFUGIUM; RODENT;

EUROPE;

MYOXIDAE; MYOXUS; MYOXUS GLIS; RODENTIA;

EID: 77649159775     PISSN: 00222372     EISSN: 15451542     Source Type: Journal    
DOI: 10.1644/08-MAMM-A-392R1.1     Document Type: Article

References (72)

1. AVISE, J. C. 1994. Molecular markers, natural history and evolution. Chapman and Hall, New York.
2. AVISE, J. C. 2000. Phylogeography: the history and formation of species. Harvard University Press, Cambridge, Massachusetts.
3. BENTZ, S., AND C. MONTGELARD. 1999. Systematic position of the African dormouse Graphiurus (Rodentia, Gliridae) assessed from cytochrome b and 12S rRNA mitochondrial genes. Journal of Mammalian Evolution 6:67-83.
4. BILTON, D. T., P. M. MIROL, S. MASCHERETTI, K. FREDGA, J. ZIMA, AND J. B. SEARLE. 1998. Mediterranean Europe as an area of endemism for small mammals rather than a source for northwards postglacial colonization. Proceedings of the Royal Society of London, B. Biological Sciences 265:1219-1226.
5. BOESSNECK, J. 1978. Steinzeitliche Tierknochenfunde aus der Bettelküche bei Sulzbach Rosenberg (Oberpfalz). Tübinger Monographien zur Urgeschichte 5:119-122.
6. BRUNHOFF, C., K. E. GALBREATH, V. B. FEDOROV, J. A. COOK, AND M. JAAROLA. 2003. Holarctic phylogeography of the root vole (Microtus oeconomus): implications for late Quaternary biogeography of high latitudes. Molecular Ecology 12:957-968.
7. CANESTRELLI, D., R. CIMMARUTA, V. COSTANTINI, AND G. NASCETTI. 2006. Genetic diversity and phylogeography of the Apennine yellow-bellied toad Bombina pachypus, with implications for conservation. Molecular Ecology 15:3741-3754.
8. CANESTRELLI, D., R. CIMMARUTA, AND G. NASCETTI. 2007. Phylogeography and historical demography of the Italian treefrog, Hyla intermedia, reveals multiple refugia, population expansions and secondary contacts within peninsular Italy. Molecular Ecology 16:4808-4821.
9. CARPANETO, G. M., AND M. CRISTALDI. 1995. Dormice and man: a review of past and present relations. Hystrix 6:303-330.
10. COSSON, J.-F., R. HUTTERER, R. LIBOIS, M. SARA, P. TABERLET, AND P. VOGEL. 2005. Phylogeographical footprints on the Strait of Gibraltar and Quaternary climatic fluctuations in the western Mediterranean: a case study with the greater white-toothed shrew, Crocidura russula (Mammalia: Soricidae). Molecular Ecology 14:1151-1162.
11. CRANDALL, K. A., AND A. R. TEMPLETON. 1993. Empirical tests of some predictions from coalescent theory with applications to intraspe-cific phylogeny reconstruction. Genetics 134:959-969.
12. DAAMS, R., AND H. DE BRUIJN. 1994. A classification of the Gliridae (Rodentia) on the basis of dental morphology. Hystrix 6:3-50.
13. DEFFONTAINE, V., ET AL. 2005. Beyond the Mediterranean peninsulas: evidence of central European glacial refugia for a temperate forest mammal species, the bank vole (Clethrionomys glareolus). Molecular Ecology 14:1727-1739.
14. DEFFONTAINE, V., ET AL. 2009. A relic bank vole lineage in the French Basque country highlights the biogeographic history of the Pyrenean region in Europe. Molecular Ecology 18:2489-2502.
15. DUBEY, S., J.-F. COSSON, V. VOHRALIK, B. KRYTUFEK, E. DIKER, AND P. VOGEL. 2007. Molecular evidence of Pleistocene bidirectional faunal exchange between Europe and the Near East: the case of the bicoloured shrew (Crocidura leucodon, Soricidae). Journal of Evolutionary Biology 20:1799-1808.
16. FELSENSTEIN, J. 1981. Evolutionary tree from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17:368-376.
17. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
18. FINK, S., L. EXCOFFIER, AND G. HECKEL. 2004. Mitochondrial gene diversity in the common vole Microtus arvalis shaped by historical divergence and local adaptations. Molecular Ecology 13:3501-3514.
19. FIORE, I., B. PINO URIA, AND A. TAGLIACOZZO. 2004. L'exploitation des petits animaux au Paléolithique supérieur-Mésolithique en Italie: l'exemple de la Grotta del Santuario della Madonna de Praia a Mare (Cosenza, Italie). Pp. 417-430 in Petits animaux et sociétés humaines: du complément alimentaire aux ressources utilitaires. Actes des rencontres 23-25 octobre 2003. APDCA, Antibes, France.
20. FU, Y.-X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
21. GUINDON, S., AND O. GASCUEL. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52:696-704.
22. HALL, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41:95-98.
23. HAYNES, S., M. JAAROLA, AND J. B. SEARLE. 2003. Phylogeography of the common vole (Microtus arvalis) with particular emphasis on the colonization of the Orkney archipelago. Molecular Ecology 12:951-956.
24. HEWITT, G. M. 1996. Some genetic consequences of ice ages and their role in divergence and speciation. Biological Journal of the Linnean Society 58:247-276.
25. HEWITT, G. M. 1999. Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society 68:87-112.
26. HEWITT, G. M. 2000. The genetic legacy of the Quaternary ices ages. Nature 405:907-913.
27. HEWITT, G. M. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London, B. Biological Sciences 359:183-195.
28. HO, S. Y. W., M. J. PHILLIPS, A. COOPER, AND A. J. DRUMMOND. 2005. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution 22:1561-1568.
29. HUELSENBECK, J. P., F. RONQUIST, R. NIELSEN, AND J. P. BOLLBACK. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-2314.
30. JAAROLA, M., AND J. B. SEARLE. 2002. Phylogeography of field voles (Microtus agrestis) in Eurasia inferred from mitochondrial DNA sequences. Molecular Ecology 11:2613-2621.
31. JAAROLA, M., AND J. B. SEARLE. 2004. A highly divergent mitochondrial DNA lineage of Microtus agrestis in southern Europe. Heredity 92:228-234.
32. JONES, M. E., D. PAETKAU, E. GEFFEN, AND C. MORITZ. 2004. Genetic diversity and population structure of Tasmanian devils, the largest marsupial carnivore. Molecular Ecology 13:2197-2209.
33. KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
34. KOTLIK, P., ET AL. 2006. A northern glacial refugium for bank voles (Clethrionomys glareolus). Proceedings of the National Academy of Sciences 103:40.
35. KREMER, A., R. J. PETIT, AND A. DUCOUSSO. 2002. Biologie évolutive et diversité génétique des chênes sessile et pédonculé. Revue Forestière Francaise 54:111-130.
36. KRYSTUFEK, B. 1999. Glis glis (Linneaus, 1766). Pp. 294-295 in The atlas of European mammals (A. J. Mitchell-Jones et al., eds.). Poyser Natural History, London, United Kingdom.
37. MAGRI, D., ET AL. 2006. A new scenario for the Quaternary history of European beech populations: palaeobotanical evidence and genetic consequences. New Phytologist 171:199-221.
38. MAYNARD-SMITH, J., AND J. HAIGH. 1974. The hitch-hiking effect of a favourable gene. Genetical Research 23:23-35.
39. MCDONALD, J. H., AND M. KREITMAN. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 354:114-116.
40. MICHAUX, J. R., R. LIBOIS, A. DAVISON, P. CHEVRET, AND R. ROSOUX. 2004. Is the western population of the European mink, (Mustela lutreola), a distinct management unit for conservation? Biological Conservation 115:357-367.
41. MICHAUX, J. R., R. LIBOIS, AND M. G. FILIPPUCI. 2005. So close and so different: comparative phylogeography of two small mammal species, the yellow-necked field mouse (Apodemus flavicollis) and the woodmouse (Apodemus sylvaticus) in the western Palaearctic region. Heredity 94:52-63.
42. MICHAUX, J. R., E. MAGNANOU, E. PARADIS, C. NIEBERDING, AND R. LIBOIS. 2003. Mitochondrial phylogeography of the woodmouse (Apodemus sylvaticus) in the western Palaearctic region. Molecular Ecology 12:685-697.
43. MONTGELARD, C., C. A. MATTHEE, AND T. J. ROBINSON. 2003. Molecular systematics of dormice (Rodentia: Gliridae) and the variation of Graphiurus in Africa. Proceedings of the Royal Society of London, B. Biological Sciences 270:1947-1955.
44. MORITZ, C. 1994. Defining "Evolutionary Significant Units" for conservation. Trends in Ecology & Evolution 9:365-373.
45. MORRIS, P. A. 2004. Dormice. British Natural History Series. Cromwell Press, Whittet Books Ltd., Linton, United Kingdom.
46. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
47. NEUMANN, K., J. R. MICHAUX, S. MAAK, H. A. H. JANSMAN, A. KAYSER, AND R. GATTERMANN. 2005. Genetic spatial structure of European common hamsters (Cricetus cricetus) - a result of repeated range expansion and demographic bottlenecks. Molecular Ecology 14:1473-1483.
48. NIEBERDING, C., R. LIBOIS, C. J. DOUADY, S. MORAND, AND J. R. MICHAUX. 2005. Phylogeography of a nematode (Heligmosomoides polygyrus) in the western Palaearctic region: persistence of northern cryptic populations during ice ages? Molecular Ecology 14:765-779.
49. O'BRIEN, S. J., D. E. WILDT, AND M. BUSH. 1986. The cheetah in genetic peril. Scientific American 254:84-92.
50. PETRUSO, D. 2000. I ghiri della Sicilia antica. Pp. 27-41 in Ghiri in Sicilia - ecologia e conservazione (M. Sarà, ed.). World Wild Fund Sicilia, DoraMarkus, Palermo, Italy.
51. PODNAR, M., W. MAYER, AND N. TVRTKOVIC. 2005. Phylogeography of the Italian wall lizard, Podarcis sicula, as revealed by mitochondrial DNA sequences. Molecular Ecology 14:575-588.
52. POSADA, D., AND K. A. CRANDALL. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
53. POWERS, D. A., T. LAUERMAN, D. CRAWFORD, AND L. DIMICHELE. 1991. Genetic mechanisms for adapting to a changing environment. Annual Review of Genetics 25:629-659.
54. RAMOS-ONSINS, S. E., AND J. ROZAS. 2002. Statistical properties of new neutrality test against population growth. Molecular Biology and Evolution 19:2092-2100.
55. ROGERS, A. R. 1995. Genetic evidence for a Pleistocene population explosion. Evolution 49:608-615.
56. ROGERS, A. R., AND H. HARPENDING. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9:552-569.
57. ROZAS, J., J. C. SANCHEZ-DELBARRIO, X. MESSEGUER, AND R. ROZAS. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497.
58. RUIZ-PESINI, E., D. MISHMAR, M. BRANDON, V. PROCACCIO, AND D. C. WALLACE. 2004. Effects of purifying and adaptive selection on regional variation in human mtDNA. Science 303:223-226.
59. SANTUCCI, F., G. NASCETTI, AND L. BULLINI. 1996. Hybrid zones between two genetically differentiated forms of the pond frog Rana lessonae in southern Italy. Journal of Evolutionary Biology 9:429-450.
60. SARÀ, M. 1998. I mammiferi delle isole del Mediterraneo. L'Epos, Palermo, Italy.
61. SARÀ, M. (ED.) 2000. Ghiri in Sicilia - ecologia e conservazione. World Wild Fund Sicilia, DoraMarkus, Palermo, Italy.
62. SCHNEIDER, S., D. ROESSLI, AND L. EXCOFFIER. 2000. Arlequin version 2.0: a software for population genetics data analysis. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
63. SLATKIN, M., AND R. R. HUDSON. 1991. Pairwise comparisons of mitochondrial-DNA sequences in stable and exponentially growing populations. Genetics 129:555-562.
64. SOMMER, R., AND A. NADACHOWSKI. 2006. Glacial refugia of mammals in Europe: evidence from fossil records. Mammal Review 36:251-266.
65. STÖCK, M., ET AL. 2008. Post-Messinian evolutionary relationships across the Sicilian channel: mitochondrial and nuclear markers link a new green toad from Sicily to African relatives. BMC Evolutionary Biology 8:56.
66. STORCH, G. 1987. Das spätglaziale und frühholozä ne Kleinsäuger-Profil vom Felsdach Felsställe in Mühlen bei Ehningen, Alb-Donau-Kreis. Pp. 275-286 in Das Felsställe, Forschungen und Berichte zur Vor- und Frühgeschichte in Baden-Württemberg (C.-J. Kind, ed.). Konrad Theiss Verlag, Stuttgart, Germany.
67. TABERLET, P., L. FUMAGALLI, A.-G. WUST- SAUCY, AND J.-F. COSSON. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology 7:453-464.
68. TAJIMA, F. 1993. Measurements of DNA polymorphism. Pp. 37-59 in Mechanisms of molecular evolution (N. Takahata and A. G. Clark, eds.). Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
69. TZEDAKIS, P. C. 1994. Vegetation change through glacial-interglacial cycles - a long pollen sequence perspective. Philosophical Transactions of the Royal Society of London, B. Biological Sciences 345:403-432.
70. URSENBACHER, S., ET AL. 2006. Phylogeography of the asp viper (Vipera aspis) inferred from mitochondrial DNA sequence data: evidence for multiple Mediterranean refugial areas. Molecular Phylogenetics and Evolution 38:546-552.
71. YANG, J., ET AL. 2008. Natural selection and adaptative evolution of leptin in the Ochotona family driven by the cold environmental stress. PLoS ONE 3:e1472.
72. YANG, Z. H., AND B. RANNALA. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Molecular Biology and Evolution 14:717-724.