Intraseasonal dynamics and dominant sequences in H3N2 influenza

PLoS ONE

Volumn 5, Issue 1, 2010, Pages

  Creanza, Nicole ^a   Schwarz, Jason S ^a   Cohen, Joel E ^a,b  

^a ROCKEFELLER UNIVERSITY   (United States)

^b Och Spine at New York Presbyterian Hospitals   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NONSTRUCTURAL PROTEIN 2; PROTEIN M2; VIRUS HEMAGGLUTININ;

AMINO ACID SEQUENCE; ARTICLE; EPIDEMIC; GENE SEQUENCE; GENETIC VARIABILITY; INFLUENZA VIRUS A H3N2; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; SEASONAL VARIATION; VIRUS GENOME; CHEMISTRY; DOMINANT GENE; GENETICS; HUMAN; INFLUENZA; PHYSIOLOGY; SEASON; VIROLOGY;

GENES, DOMINANT; HUMANS; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA, HUMAN; SEASONS;

EID: 77649136560     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0008544     Document Type: Article

References (15)

1. Russell CJ, Webster RG (2005) "The genesis of a pandemic influenza virus." Cell 123(3): 368-71.
2. Hay AJ, Gregory V, Douglas AR, Lin YP (2001) "The evolution of human influenza viruses." Philos Trans R Soc Lond B Biol Sci 356(1416): 1861-70.
3. Thompson WW, Shay DK, Weintraub E, Brammer L, Cox N, et al. (2003) "Mortality associated with influenza and respiratory syncytial virus in the United States." JAMA 289(2): 179-86.
4. WHO Influenza Fact Sheet (#211) http://www.who.int/mediacentre/ factsheets/fs211/en/. Accessed January 16, 2008.
5. Ghedin E, Sengamalay NA, Shumway M, Zaborsky J, Feldblum T, et al. (2005) "Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution." Nature 437: 1162-1166.
6. Holmes EC, Ghedin E, Miller N, Taylor J, Bao Y, et al. (2005) "Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses." PLoS Biol 3(9): e300.
7. Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, et al. (2008) "The genomic and epidemiological dynamics of human influenza A virus." Nature 453(7195): 615-9.
8. Russell CA, Jones TC, Barr IG, Cox NJ, Garten RJ, et al. (2008) "The global circulation of seasonal influenza A (H3N2) viruses." Science 320(5874): 340-6.
9. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1594-1599.
10. Boni FB, Gog JR, Andreasen V, Feldman MW (2006) "Epidemic dynamics and antigenic evolution in a single season of influenza A." Proceeding of the Royal Society B 273: 1307-16.
11. Gog J (2008) "The impact of evolutionary constraints on influenza dynamics." Vaccine 18(26) Suppl 3: C15-24.
12. Kryazhimskiy S, Plotkin JB (2008) "The population genetics of dN/dS." PLoS Genet 4(12): e1000304.
13. Lavenu A, Leruez-Ville M, Chaix ML, Boelle PY, Rogez S, et al. (2006) "Detailed analysis of the genetic evolution of influenza virus during the course of an epidemic." Epidemiol Infect 134(3): 514-20.
14. Nelson MI, Edelman L, Spiro DJ, Boyne AR, Bera J, et al. (2008) "Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States." PLoS Pathog 4(8): e1000133.
15. Nelson MI, Simonsen L, Viboud C, Miller MA, Taylor J, et al. (2006) "Stochastic processes are key determinants of short-term evolution in influenza A virus." PLoS Pathog 2(12): e125.