Compilation of a panel of informative single nucleotide polymorphisms for bovine identification in the Northern Irish cattle population

BMC Genetics

Volumn 11, Issue , 2010, Pages

  Allen, Adrian R ^a   Taylor, Malcolm ^a   McKeown, Brian ^b   Curry, April I ^a   Lavery, John F ^a   Mitchell, Andy ^b   Hartshorne, David ^b   Fries, Rüdi ^c   Skuce, Robin A ^a  

^a AGRI FOOD AND BIOSCIENCES INSTITUTE   (United Kingdom)

^b Orchid Cellmark   (United States)

^c TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL GENETICS; ANIMAL IDENTIFICATION; ARTICLE; BREED DIFFERENCE; BREEDING; CATTLE; COW; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENOTYPE; IRELAND; NONHUMAN; SINGLE NUCLEOTIDE POLYMORPHISM; ALGORITHM; ANIMAL; CHEMISTRY; DNA SEQUENCE; GENETICS; MALE; METHODOLOGY; POPULATION GENETICS; SPERM; UNITED KINGDOM;

ANIMALIA; BOS; BOVINAE;

ALGORITHMS; ANIMALS; CATTLE; GENE FREQUENCY; GENETICS, POPULATION; LINKAGE DISEQUILIBRIUM; MALE; NORTHERN IRELAND; POLYMORPHISM, SINGLE NUCLEOTIDE; SEMEN; SEQUENCE ANALYSIS, DNA;

EID: 77349085794     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-11-5     Document Type: Article

References (27)

1. Houston R. A computerised database system for bovine traceability. Revue Scientifique et Technique 2001, 20:652-661.
2. Buick W. Animal Passports and Identification. Defra Veterinary Journal 2004, 15:20-26.
3. Caporale V, Giovannini A, Di Francesco C, Calistri P. Importance of the traceability of animal products in epidemiology. Revue Scientifique et Technique 2001, 20:372-378.
4. McKean JD. The importance of traceability for public health and consumer protection. Revue Scientifique et Technique 2001, 20:363-371.
5. McGrann J, Wiseman H. Animal traceability across national frontiers in the European Union. Revue Scientifique et Technique 2001, 20:406-412.
6. Ammendrup S, Fussel AE. Legislative requirements for the identification and traceability of farm animals within the European Union. Revue Scientifique et Technique 2001, 20:437-444.
7. Commission of the European Communities 2000, Regulation (EC) No. 1760/2000 of the European Parliament and of the Council of 17 July 2000 Establishing a system for the identification and registration of bovine animals and regarding the labelling of beef and beef products and repealing Council Regulation (EC) No. 820/97. Off J Eur Communities L 204:1-10. Commission of the European Communities 2000, Regulation (EC) No. 1760/2000 of the European Parliament and of the Council of 17 July 2000.
8. Council Regulation (EC) No 178/2002 of the European Parliament and of the Council of 28 January 2002 Laying down the general principles and requirements of food law, establishing the European Food Safety Authority and laying down procedures in matters of food safety. Off J Eur Communities L 31:1-24. Council Regulation (EC) No 178/2002 of the European Parliament and of the Council of 28 January 2002.
9. Ribo O, Korn C, Meloni U, Cropper M, De Winne P, Cuypers M. IDEA: a large scale project on electronic identification of livestock. Revue Scientifique et Technique 2001, 20:426-436.
10. Report From The Commission To The Council And The European Parliament On the possibility of introduction of electronic identification for bovine animals. 2005, Report From The Commission To The Council And The European Parliament., http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=COM:2005:0009:FIN: EN:PDF
11. Fosgate GT, Adesiyun AA, Hird DW. Ear-tag retention and identification methods for extensively managed water buffalo (Bubalus bubalis) in Trinidad. Preventive Veterinary Medicine 2006, 73:287-296. 10.1016/j.prevetmed.2005.09.006, 16242197.
12. Capoferri R, Bongioni G, Galli A, Aleandri R. Genetic Control of Conventional Labelling through the Bovine Meat Production Chain by Single Nucleotide Polymorphisms Using Real Time PCR. Journal of Food Protection 2006, 69:1971-1977.
13. Pettitt RG. Traceability in the food animal industry and supermarket chains. Revue Scientifique et Technique 2001, 20:584-597.
14. Cunningham EP, Meghen CM. Biological Identification Systems: genetic markers. Revue Scientifique et Technique 2001, 20:491-499.
15. Raspor P. Bio-markers: traceability in food safety issues. Acta Biochimica Polonica 2004, 52:659-664.
16. Glowatzki-Mullis ML, Gaillard C, Wigger G, Fries R. Micorsatellite based parentage control in cattle. Animal Genetics 1995, 26:7-12.
17. Heyen DW, Beever JE, Da Y, Evert RE, Green C, Bates SR, Ziegle JS, Lewin HA. Exclusion probabilities of 22 bovine microsatellite markers in fluorescent multiplexes for semi automated parentage testing. Animal Genetics 1997, 28:21-27. 10.1111/j.1365-2052.1997.t01-1-00057.x, 9124703.
18. Werner FAO, Durstewitz G, Habermann FA, Thaller G, Kramer W, Kollers S, Buitkamp J, Georges M, Brem G, Mosner J, Fries R. Detection and characterization of SNPs useful for identity control and parentage testing in major European dairy breeds. Animal Genetics 2004, 35:44-49. 10.1046/j.1365-2052.2003.01071.x, 14731229.
19. Krawczak M. Informativity assessment for bi-allelic single nucleotide polymorphisms. Electrophoresis 1999, 20:1676-1681. 10.1002/(SICI)1522-2683(19990101)20:8<1676::AID-ELPS1676>3.0.CO;2-D, 10435431.
20. Kruglyak L. The use of a genetic map of biallelic markers in linakage studies. Nature Genetics 1997, 17:21-24. 10.1038/ng0997-21, 9288093.
21. Kim S, Misra A. SNP genotyping: technologies and biomedical applications. Annual Review of Biomedical Engineering 2007, 9:289-320. 10.1146/annurev.bioeng.9.060906.152037, 17391067.
22. Heaton MP, Harhay GP, Bennett GL, Stone RT, Grosse WM, Casas E, Keele JW, Smith TPL, Chitkon-McKown CG, Laegreid WW. Selection and use of SNP markers for animal identification and paternity analysis in U.S. beef cattle. Mammalian Genome 2002, 13:272-281. 10.1007/s00335-001-2146-3, 12016516.
23. HapMap Consortium Genome Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds. Science 2009, 324:528-532. 10.1126/science.1167936, 2735092, 19390050, HapMap Consortium.
24. Kim ES, Kirkpatrick BW. Linkage Disequilibrium in the North American Holstein population. Animal Genetics 2009, 40:279-288. 10.1111/j.1365-2052.2008.01831.x, 19220233.
25. Gabriel SB, Schaffner SF, Nguyen H, Moore JM, Roy J, Blumenstiel B, Higgins J, DeFelice M, Lochner A, Faggart M, Liu-Cordero SN, Rotimi C, Adeyemo A, Cooper R, Ward R, Lander ES, Daly MJ, Altshuler D. The structure of haplotype blocks in the human genome. Science 2002, 296:2225-2229. 10.1126/science.1069424, 12029063.
26. Ronaghi M, Uhlen M, Nyren P. A sequencing method based on real time pyro-phosphate. Science 1998, 281:363-365. 10.1126/science.281.5375.363, 9705713.
27. Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005, 21(2):263-265. 10.1093/bioinformatics/bth457, 15297300.