Proline reduces the binding of transcriptional regulator ArgR to upstream of argB in Corynebacterium glutamicum

Applied Microbiology and Biotechnology

Volumn 86, Issue 1, 2010, Pages 235-242

  Lee, Soo Youn ^a   Shin, Hwa Sung ^b   Park, Jin Soo ^c   Kim, Yang Hoon ^d   Min, Jiho ^a  

^a Chonbuk National University   (South Korea)

^b Inha University   (South Korea)

^c Sangmyung University   (South Korea)

^d Chungbuk National University   (South Korea)

Author keywords

ChIP assay; Corynebacterium glutamicum; Ornithine; Proline; Upstream of argB

Indexed keywords

BINDING AFFINITIES; CORYNEBACTERIUM GLUTAMICUM; ENDOGENOUS LEVEL; IN-VIVO; PROTEIN BINDS; TRANSCRIPTIONAL REGULATOR; UPSTREAM REGION;

AMINO ACIDS; BINDING ENERGY; BIOCHEMISTRY; GENE EXPRESSION;

BINDING SITES;

ARGININE; BACTERIAL PROTEIN; GLUTAMIC ACID; ORNITHINE; PROLINE;

AMINO ACID; BACTERIUM; ESTER; PROTEIN;

AMINO ACID SYNTHESIS; ARTICLE; BINDING AFFINITY; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; CORYNEBACTERIUM GLUTAMICUM; DNA BINDING; DNA FLANKING REGION; GENE CONTROL; IN VIVO STUDY; NONHUMAN; OPERON; PROTEIN DNA BINDING; PROTEIN PROTEIN INTERACTION; TRANSCRIPTION REGULATION;

ARGININE; BACTERIAL PROTEINS; BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; CORYNEBACTERIUM GLUTAMICUM; GENE EXPRESSION REGULATION, BACTERIAL; GLUTAMIC ACID; OPERON; ORNITHINE; PROLINE; PROTEIN BINDING; REPRESSOR PROTEINS;

CORYNEBACTERIUM GLUTAMICUM;

EID: 77149175631     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-009-2264-5     Document Type: Article

References (29)

1. B Barcelona-Andrés A Marina V Rubio 2002 Gene structure, organization, expression, and potential regulatory mechanisms of arginine catabolism in Enterococcus faecalis J Bacteriol 184 6289 6300 10.1128/JB.184.22.6289-6300.2002 (Pubitemid 35265910)
2. M Caldara D Charlier R Cunin 2006 The arginine regulon of Escherichia coli: wholesystem transcriptome analysis discovers new genes and provides an integrated view of arginine regulation Microbiology 152 3343 3354 10.1099/mic.0.29088-0 1:CAS:528:DC%2BD28Xht1GntrrI (Pubitemid 44734337)
3. FP Chinard 1952 Photometric estimation of proline and ornithine J Biol Chem 199 91 95 1:CAS:528:DyaG3sXms1yn
4. Ml Fernández-Murga F Gil-Ortiz JL Llácer V Rubio 2004 Arginine biosynthesis in Thermotoga maritima: characterization of the arginine-sensitive N-acetyl-l-glutamate kinase J Bacteriol 186 6142 6149 10.1128/JB.186.18.6142-6149.2004 (Pubitemid 39187003)
5. C Genisset CL Galeotti P Lupetti D Mercati DAG Skibinski S Barone R Battistutta M Bernard JL Telford 2006 A Helicobacter pylori vacuolating toxin mutant that fails to oligomerize has a dominant negative phenotype Infect Immun 74 1786 1794 10.1128/IAI.74.3.1786-1794.2006 1:CAS:528:DC%2BD28XmtFSqu7w%3D (Pubitemid 43346814)
6. A Ghochikyan IM Karaivanova M Lecocq P Vusio M-C Arnaud M Snapyan P Weigel L Guével M Buckle V Sakanyan 2002 Arginine operator binding by heterologous and chimeric ArgR repressors from Escherichia coli and Bacillus stearothermophilus J Bacteriol 184 6602 6614 10.1128/JB.184.23.6602-6614.2002 1:CAS:528:DC%2BD38XovFOntrg%3D (Pubitemid 35332565)
7. R Grandori TA Lavoie M Pflumm G Tian H Niersbach WK Maas R Fairman J Carey 1995 The DNA-binding domain of the hexameric arginine repressor J Mol Biol 254 150 162 10.1006/jmbi.1995.0607 1:CAS:528:DyaK2MXps12it7g%3D
8. D Gregory V Duyne G Ghosh WK Maas PB Sigler 1996 Structure of the oligomerization and l-arginine binding domain of the arginine repressor of Escherichia coli J Mol Biol 256 377 391 10.1006/jmbi.1996.0093
9. E Hänler T Müller N Jeberger A Volzke J Plassmeier J Kalinowski R Krämer A Burkovski 2007 FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum Appl Microbiol Biotechnol 76 625 632 10.1007/s00253-007-0929-5 (Pubitemid 47283125)
10. S Hashim D-H Kwon A Abdelal C-D Lu 2004 The arginine regulatory protein mediates repression by arginine of the operons encoding glutamate synthase and anabolic glutamate dehydrogenase in Pseudomonas aeruginosa J Bacteriol 186 3848 3854 10.1128/JB.186.12.3848-3854.2004 1:CAS:528:DC%2BD2cXkvFOrs70%3D (Pubitemid 38746060)
11. E Krin C Laurent-Winter PN Bertin A Danchin A Kolb 2003 Transcription regulation coupling of the divergent argG and metY promoters in Escherichia coli K-12 J Bacteriol 185 3139 3146 10.1128/JB.185.10.3139-3146.2003 1:CAS:528:DC%2BD3sXjs1ejs70%3D (Pubitemid 36539111)
12. R Larsen J Kok OP Kuipers 2005 Interaction between ArgR and AhrC controls regulation of arginine metabolism in Lactococcus lactis J Biol Chem 280 19319 19330 10.1074/jbc.M413983200 1:CAS:528:DC%2BD2MXjvFersbw%3D (Pubitemid 41379639)
13. Y-J Lee J-Y Cho 2006 Genetic manopulation of a primary metabolic pathway for l-ornithine production in Escherichia coli Biotechnol Lett 28 1849 1856 10.1007/s10529-006-9163-y 1:CAS:528:DC%2BD28XhtVCntbfK (Pubitemid 44546732)
14. H-W Lee S-J Yoon H-W Jang C-S Kim T-H Kim W-S Ryu J-K Jung Y-H Park 2000 Effects of mixing on fed-batch fermentation of l-ornithine J Biosci Bioeng 89 539 544 10.1016/S1389-1723(00)80053-5 1:CAS:528:DC%2BD3cXmtFGjtLg%3D (Pubitemid 30497635)
15. W Leuchtenberger K Huthmacher K Drauz 2005 Biotechnological production of amino acids and derivatives: current status and prospects Appl Microbiol Biotechnol 69 1 8 10.1007/s00253-005-0155-y 1:CAS:528:DC%2BD2MXht1Cqt7fI (Pubitemid 41719169)
16. W Liebl A Bayerl B Schein U Stillner KH Schleifer 1989 High effeciency electroporation of intact Corynebacterium glutamicum cells FEMS Microbiol Lett 65 299 304 10.1111/j.1574-6968.1989.tb03677.x 1:CAS:528:DyaK3cXlt1Smsg%3D%3D
17. WK Maas 1994 The arginine repressor of Escherichia coli Microbiol Rev 58 631 640 1:CAS:528:DyaK2MXivFahtLg%3D
18. KS Makarova AA Mironov MS Gelfand 2001 Conservation of the binding site for the arginine repressor in all bacterial lineages Genome Biol 2 1 9
19. S-M Park C-D Lu AT Abdelal 1997 Cloning and characterization of argR, a gene that participates in regulation of arginine biosynthesis and catabolism in Pseudomonas aeruginosa PAO1 J Bacteriol 179 5300 5308 1:CAS:528: DyaK2sXlvFWhsLo%3D
20. L Paul PK Mishra RM Blumenthal RG Matthews 2007 Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR BMC Microbiol 7 377 391 10.1186/1471-2180-7-2 (Pubitemid 46237526)
21. LW Richard CA Lee 1980 Isolation and characterization of Neurospora crassa mutants impaired in feedback control of ornithine synthesis J Bacteriol 141 1305 1311
22. M SamalIíková J Carey R Grandori 2005 Assembly of the hexameric Escherichia coli arginine repressor investigated by nano-electrospray ionization time-of-flight mass spectrometry Rapid Commun Mass Spectrom 19 2549 2552 10.1002/rcm.2094 (Pubitemid 41338596)
23. Sambrook J, Fritsch EF, Maniatis T (2001) Molecular cloning: a laboratory manual, 3 rd press. Cold Spring Harbor Laboratory, Cold Spring Harbor
24. V Sakanyan P Petrosyan M Lecocq A Boyen C Legrain M Demarez J-N Hallet N Glansdorff 1996 Genes and enzymes of the acetyl cycle of arginine biosynthesis in Corynebacterium glutamicum: enzyme evolution in the early steps of the arginine pathway Microbiology 142 99 108 10.1099/13500872-142-1-99 1:CAS:528:DyaK28XlsFOmtA%3D%3D
25. NH Steffan HD Hunt RM Horton JK Pullen LR Pease 1989 Site-directed mutagenesis by overlap extension using the polymerase chain reaction Gene 77 51 59 10.1016/0378-1119(89)90358-2 (Pubitemid 19125653)
26. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680 10.1093/nar/22.22.4673 1:CAS:528:DyaK2MXitlSgu74%3D
27. S Udaka 1966 Pathway-specific pattern of control of arginine biosynthesis in bacteria J Bacteriol 91 617 621 10.1002/path.1700910242 1:CAS:528: DyaF28XltlyqtQ%3D%3D
28. T Utagawa 2004 Arginine metabolism: enzymology, nutrition, and clinical significance J Nutr 134 2741S 2897S
29. Y Xu B Labedan N Glansdorff 2007 Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms Microbiol Mol Biol Rev 71 36 47 10.1128/MMBR.00032-06 1:CAS:528: DC%2BD2sXksleqsLk%3D (Pubitemid 46456683)