-
1
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
Chicken Genome Sequencing Consortium 10.1038/nature03154. 15592404
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. International Chicken Genome Sequencing Consortium, Nature 2004 432 695 716 10.1038/nature03154 15592404
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
2
-
-
0041317004
-
Natural selection drives Drosophila immune system evolution
-
12930753
-
Natural selection drives Drosophila immune system evolution. TA Schlenke DJ Begun, Genetics 2003 164 4 1471 80 12930753
-
(2003)
Genetics
, vol.164
, Issue.4
, pp. 1471-80
-
-
Schlenke, T.A.1
Begun, D.J.2
-
3
-
-
29144525031
-
High level of functional polymorphism indicates a unique role of natural selection at human immune system loci
-
10.1007/s00251-005-0052-7. 16261383
-
High level of functional polymorphism indicates a unique role of natural selection at human immune system loci. AL Hughes B Packer R Welch SJ Chanock M Yeager, Immunogenetics 2005 57 11 821 7 10.1007/s00251-005-0052-7 16261383
-
(2005)
Immunogenetics
, vol.57
, Issue.11
, pp. 821-7
-
-
Hughes, A.L.1
Packer, B.2
Welch, R.3
Chanock, S.J.4
Yeager, M.5
-
4
-
-
34547645438
-
Molecular evolutionary genomics of birds
-
10.1159/000103172. 17675852
-
Molecular evolutionary genomics of birds. H Ellegren, Cytogenet Genome Res 2007 117 1-4 120 30 10.1159/000103172 17675852
-
(2007)
Cytogenet Genome Res
, vol.117
, Issue.1-4
, pp. 120-30
-
-
Ellegren, H.1
-
5
-
-
0034748479
-
Compositional mapping of chicken chromosomes and identification of the gene-richest regions
-
10.1023/A:1012436900788. 11721951
-
Compositional mapping of chicken chromosomes and identification of the gene-richest regions. L Andreozzi C Federico S Motta S Saccone AL Sazanova AA Sazanov AF Smirnov SA Galkina NA Lukina AV Rodionov N Carels G Bernardi, Chromosome Res 2001 9 521 32 10.1023/A:1012436900788 11721951
-
(2001)
Chromosome Res
, vol.9
, pp. 521-32
-
-
Andreozzi, L.1
Federico, C.2
Motta, S.3
Saccone, S.4
Sazanova, A.L.5
Sazanov, A.A.6
Smirnov, A.F.7
Galkina, S.A.8
Lukina, N.A.9
Rodionov, A.V.10
Carels, N.11
Bernardi, G.12
-
6
-
-
33646884615
-
Strong regional biases in nucleotide substitution in the chicken genome
-
10.1093/molbev/msk008. 16551647
-
Strong regional biases in nucleotide substitution in the chicken genome. MT Webster E Axelsson H Ellegren, Mol Biol Evol 2006 23 1203 16 10.1093/molbev/msk008 16551647
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1203-16
-
-
Webster, M.T.1
Axelsson, E.2
Ellegren, H.3
-
7
-
-
34548021894
-
Isochore pattern and gene distribution in the chicken genome
-
10.1016/j.gene.2007.05.025. 17629634
-
Isochore pattern and gene distribution in the chicken genome. M Costantini M Di Filippo F Auletta G Bernardi, Gene 2007 400 9 15 10.1016/j.gene.2007.05.025 17629634
-
(2007)
Gene
, vol.400
, pp. 9-15
-
-
Costantini, M.1
Di Filippo, M.2
Auletta, F.3
Bernardi, G.4
-
8
-
-
33947127751
-
Origin of avian genome size and structure in non-avian dinosaur
-
10.1038/nature05621. 17344851
-
Origin of avian genome size and structure in non-avian dinosaur. CL Organ AM Shedlock A Meade M Pagel SV Edwards, Nature 2007 446 180 4 10.1038/nature05621 17344851
-
(2007)
Nature
, vol.446
, pp. 180-4
-
-
Organ, C.L.1
Shedlock, A.M.2
Meade, A.3
Pagel, M.4
Edwards, S.V.5
-
9
-
-
0029100668
-
Small genomes for better flyers
-
10.1038/377391a0. 7566113
-
Small genomes for better flyers. AL Hughes MK Hughes, Nature 1995 377 391 10.1038/377391a0 7566113
-
(1995)
Nature
, vol.377
, pp. 391
-
-
Hughes, A.L.1
Hughes, M.K.2
-
10
-
-
10644271562
-
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
-
Chicken Polymorphism Map Consortium 10.1038/nature03156. 15592405
-
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. International Chicken Polymorphism Map Consortium, Nature 2004 432 717 22 10.1038/nature03156 15592405
-
(2004)
Nature
, vol.432
, pp. 717-22
-
-
-
12
-
-
0141742293
-
PANTHER: A library of protein families and subfamilies indexed by function
-
10.1101/gr.772403. 12952881
-
PANTHER: a library of protein families and subfamilies indexed by function. PD Thomas MJ Campbell A Kejariwal H Mi B Karlak R Daverman K Diemer A Muruganujan A Narechania, Genome Res 2003 13 2129 41 10.1101/gr.772403 12952881
-
(2003)
Genome Res
, vol.13
, pp. 2129-41
-
-
Thomas, P.D.1
Campbell, M.J.2
Kejariwal, A.3
Mi, H.4
Karlak, B.5
Daverman, R.6
Diemer, K.7
Muruganujan, A.8
Narechania, A.9
-
13
-
-
67650290026
-
Bioinformatic discovery and population-level validation of selection at the chicken interleukin-4 receptor alpha-chain gene
-
10.1186/1471-2148-9-136. 19527513
-
Bioinformatic discovery and population-level validation of selection at the chicken interleukin-4 receptor alpha-chain gene. T Downing DJ Lynn S Connell AT Lloyd AKFH Bhuiyan P Silva A Naqvi R Sanfo RS Sow B Podisi C O'Farrelly O Hanotte DG Bradley, BMC Evolutionary Biology 2009 9 1 136 10.1186/1471-2148-9- 136 19527513
-
(2009)
BMC Evolutionary Biology
, vol.9
, Issue.1
, pp. 136
-
-
Downing, T.1
Lynn, D.J.2
Connell, S.3
Lloyd, A.T.4
Akfh, B.5
Silva, P.6
Naqvi, A.7
Sanfo, R.8
Sow, R.S.9
Podisi, B.10
O'Farrelly, C.11
Hanotte, O.12
Bradley, D.G.13
-
14
-
-
0027399530
-
Identification of protein coding regions by database similarity search
-
10.1038/ng0393-266. 8485583
-
Identification of protein coding regions by database similarity search. W Gish DJ States, Nat Genet 1993 3 266 72 10.1038/ng0393-266 8485583
-
(1993)
Nat Genet
, vol.3
, pp. 266-72
-
-
Gish, W.1
States, D.J.2
-
15
-
-
0034623005
-
T-Coffee. A novel method for fast and accurate multiple sequence alignment
-
10.1006/jmbi.2000.4042. 10964570
-
T-Coffee. A novel method for fast and accurate multiple sequence alignment. C Notredame DG Higgins J Heringa, J Mol Biol 2000 302 1 205 17 10.1006/jmbi.2000.4042 10964570
-
(2000)
J Mol Biol
, vol.302
, Issue.1
, pp. 205-17
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
16
-
-
33646886862
-
Isochore structures in the chicken genome
-
10.1111/j.1742-4658.2006.05178.x. 16623701
-
Isochore structures in the chicken genome. F Gao CT Zhang, FEBS J 2006 273 1637 48 10.1111/j.1742-4658.2006.05178.x 16623701
-
(2006)
FEBS J
, vol.273
, pp. 1637-48
-
-
Gao, F.1
Zhang, C.T.2
-
17
-
-
0036889183
-
Inference of selection from multiple species alignments
-
10.1016/S0959-437X(02)00348-9. 12433583
-
Inference of selection from multiple species alignments. Z Yang, Curr Opin Genet Dev 2002 12 688 94 10.1016/S0959-437X(02)00348-9 12433583
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 688-94
-
-
Yang, Z.1
-
18
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
10.1038/351652a0. 1904993
-
Adaptive protein evolution at the Adh locus in Drosophila. JH McDonald M Kreitman, Nature 1991 351 6328 652 4 10.1038/351652a0 1904993
-
(1991)
Nature
, vol.351
, Issue.6328
, pp. 652-4
-
-
McDonald, J.H.1
Kreitman, M.2
-
19
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
10.1038/4151022a. 11875568
-
Adaptive protein evolution in Drosophila. NG Smith A Eyre-Walker, Nature 2002 415 6875 1022 4 10.1038/4151022a 11875568
-
(2002)
Nature
, vol.415
, Issue.6875
, pp. 1022-4
-
-
Smith, N.G.1
Eyre-Walker, A.2
-
20
-
-
65349138349
-
Quantification of adaptive evolution of genes expressed in avian brain and the population size effect on the efficacy of selection
-
10.1093/molbev/msp019. 19188264
-
Quantification of adaptive evolution of genes expressed in avian brain and the population size effect on the efficacy of selection. E Axelsson H Ellegren, Mol Biol Evol 2009 26 5 1073 9 10.1093/molbev/msp019 19188264
-
(2009)
Mol Biol Evol
, vol.26
, Issue.5
, pp. 1073-9
-
-
Axelsson, E.1
Ellegren, H.2
-
21
-
-
44849107389
-
Natural selection in avian protein-coding genes expressed in brain
-
10.1111/j.1365-294X.2008.03795.x. 18482257
-
Natural selection in avian protein-coding genes expressed in brain. E Axelsson L Hultin-Rosenberg M Brandström M Zwahlén DF Clayton H Ellegren, Mol Ecol 2008 17 12 3008 17 10.1111/j.1365-294X.2008.03795.x 18482257
-
(2008)
Mol Ecol
, vol.17
, Issue.12
, pp. 3008-17
-
-
Axelsson, E.1
Hultin-Rosenberg, L.2
Brandström, M.3
Zwahlén, M.4
Clayton, D.F.5
Ellegren, H.6
-
22
-
-
59449103500
-
Controlling type-I error of the McDonald-Kreitman test in genomewide scans for selection on noncoding DNA
-
10.1534/genetics.108.091850. 18791238
-
Controlling type-I error of the McDonald-Kreitman test in genomewide scans for selection on noncoding DNA. P Andolfatto, Genetics 2008 180 3 1767 71 10.1534/genetics.108.091850 18791238
-
(2008)
Genetics
, vol.180
, Issue.3
, pp. 1767-71
-
-
Andolfatto, P.1
-
23
-
-
42249098413
-
Ku70 prevents genome instability resulting from heterozygosity of the telomerase RNA component in a vertebrate tumour line
-
10.1016/j.dnarep.2008.01.008. 18308646
-
Ku70 prevents genome instability resulting from heterozygosity of the telomerase RNA component in a vertebrate tumour line. V Faure T Wenner C Cooley E Bourke CJ Farr S Takeda CG Morrison, DNA Repair (Amst) 2008 7 5 713 24 10.1016/j.dnarep.2008.01.008 18308646
-
(2008)
DNA Repair (Amst)
, vol.7
, Issue.5
, pp. 713-24
-
-
Faure, V.1
Wenner, T.2
Cooley, C.3
Bourke, E.4
Farr, C.J.5
Takeda, S.6
Morrison, C.G.7
-
24
-
-
28444462167
-
DNA polymerase eta in homologous DNA recombination and translesion DNA synthesis
-
10.1016/j.molcel.2005.10.016. 16337602
-
DNA polymerase eta in homologous DNA recombination and translesion DNA synthesis. T Kawamoto K Araki E Sonoda YM Yamashita K Harada K Kikuchi C Masutani F Hanaoka K Nozaki N Hashimoto S Takeda, Mol Cell 2005 20 5 793 9 10.1016/j.molcel.2005.10.016 16337602
-
(2005)
Mol Cell
, vol.20
, Issue.5
, pp. 793-9
-
-
Kawamoto, T.1
Araki, K.2
Sonoda, E.3
Yamashita, Y.M.4
Harada, K.5
Kikuchi, K.6
Masutani, C.7
Hanaoka, F.8
Nozaki, K.9
Hashimoto, N.10
Takeda, S.11
-
25
-
-
33748473348
-
The genomic rate of adaptive evolution
-
10.1016/j.tree.2006.06.015. 16820244
-
The genomic rate of adaptive evolution. A Eyre-Walker, Trends Ecol Evol 2006 21 10 569 75 10.1016/j.tree.2006.06.015 16820244
-
(2006)
Trends Ecol Evol
, vol.21
, Issue.10
, pp. 569-75
-
-
Eyre-Walker, A.1
-
26
-
-
0036961560
-
Changing effective population size and the McDonald-Kreitman test
-
12524367
-
Changing effective population size and the McDonald-Kreitman test. A Eyre-Walker, Genetics 2002 162 4 2017 24 12524367
-
(2002)
Genetics
, vol.162
, Issue.4
, pp. 2017-24
-
-
Eyre-Walker, A.1
-
27
-
-
12744271852
-
Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes
-
10.1101/gr.3021305. 15590944
-
Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. E Axelsson MT Webster NG Smith DW Burt H Ellegren, Genome Res 2005 15 1 120 5 10.1101/gr.3021305 15590944
-
(2005)
Genome Res
, vol.15
, Issue.1
, pp. 120-5
-
-
Axelsson, E.1
Webster, M.T.2
Smith, N.G.3
Burt, D.W.4
Ellegren, H.5
-
28
-
-
62749186214
-
Avian comparative genomics: Reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes) - An atypical species with low diploid number
-
10.1007/s10577-009-9021-6. 19172404
-
Avian comparative genomics: reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes) - an atypical species with low diploid number. W Nie PC O'Brien BL Ng B Fu V Volobouev NP Carter MA Ferguson-Smith F Yang, Chromosome Res 2009 17 99 113 10.1007/s10577-009-9021-6 19172404
-
(2009)
Chromosome Res
, vol.17
, pp. 99-113
-
-
Nie, W.1
O'Brien, P.C.2
Ng, B.L.3
Fu, B.4
Volobouev, V.5
Carter, N.P.6
Ferguson-Smith, M.A.7
Yang, F.8
-
29
-
-
34248231212
-
The evolution of the avian genome as revealed by comparative molecular cytogenetics
-
10.1159/000103166. 17675846
-
The evolution of the avian genome as revealed by comparative molecular cytogenetics. DK Griffin LB Robertson HG Tempest BM Skinner, Cytogenet Genome Res 2007 117 64 77 10.1159/000103166 17675846
-
(2007)
Cytogenet Genome Res
, vol.117
, pp. 64-77
-
-
Griffin, D.K.1
Robertson, L.B.2
Tempest, H.G.3
Skinner, B.M.4
-
30
-
-
51849143838
-
A linkage map of the zebra finch Taeniopygia guttata provides new insights into avian genome evolution
-
10.1534/genetics.107.086264. 18493078
-
A linkage map of the zebra finch Taeniopygia guttata provides new insights into avian genome evolution. J Stapley TR Birkhead T Burke J Slate, Genetics 2008 179 1 651 67 10.1534/genetics.107.086264 18493078
-
(2008)
Genetics
, vol.179
, Issue.1
, pp. 651-67
-
-
Stapley, J.1
Birkhead, T.R.2
Burke, T.3
Slate, J.4
|