Archaeal diversity in the Haloalkaline lake Elmenteita in kenya

Current Microbiology

Volumn 60, Issue 1, 2010, Pages 47-52

  Mwirichia, Romano ^a   Cousin, Sylvie ^b   Muigai, Anne W ^a   Boga, Hamadi I ^a   Stackebrandt, Erko ^b  

^a JOMO KENYATTA UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Kenya)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

AMPLIFIED RIBOSOMAL DNA RESTRICTION ANALYSIS; ARTICLE; BRACHIONUS PLICATILIS; CONTROLLED STUDY; DIPLOLAIMELLA DIEVENGATENSIS; GELASTOCORIS OCULATUS; HALOBACTERIALES; HALORUBRUM; KENYA; NATRONOCOCCUS; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE;

ARCHAEA; BIODIVERSITY; GENES, RRNA; KENYA; RNA, RIBOSOMAL, 16S; WATER MICROBIOLOGY;

ARCHAEA; EUKARYOTA; HALALKALICOCCUS; HALOBACTERIALES; HALOBIFORMA; HALORUBRUM; NATRONOCOCCUS;

EID: 76749148983     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-009-9500-1     Document Type: Article

References (37)

1. RI Amann W Ludwig KH Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169 7535888 1:CAS:528:DyaK2MXkvVGmurk%3D
2. KE Ashelford NA Chuzhanova JC Fry AJ Jones AJ Weightman 2006 New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras Appl Environ Microbiol 72 5734 5741 10.1128/AEM.00556-06 16957188 1:CAS:528:DC%2BD28XpvVKjsrY%3D (Pubitemid 44414595)
3. Ausubel FM (1995) Current protocols in molecular biology. Wiley, New York
4. Baumgarten S (2003) Microbial diversity of soda lake habitats. Ph.D. thesis, Carolo-Wilhelmina University, Braunschweig
5. S Benlloch SG Acinas J Anton A Lopez-Lopez SP Luz F Rodriguez-Valera 2001 Archaeal biodiversity in crystallizer ponds from a solar saltern: culture versus PCR Microbiol Ecol 41 12 19 1:CAS:528:DC%2BD3MXjvFygtb4%3D
6. E Cytryn D Minz RS Oremland Y Cohen 2000 Distribution and diversity of Archaea corresponding to the limnological cycle of a hypersaline stratified lake (Solar Lake, Sinai, Egypt) Appl Environ Microbiol 66 3269 3276 10.1128/AEM.66.8.3269-3276.2000 10919780 1:CAS:528:DC%2BD3cXlsFaku7o%3D (Pubitemid 30624567)
7. EF De Long 1992 Archaea in coastal marine environments Proc Natl Acad Sci USA 89 5685 5689 10.1073/pnas.89.12.5685
8. MA Dojka JK Harris NR Pace 2000 Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria Appl Environ Microbiol 66 1617 1621 10.1128/AEM.66.4.1617-1621.2000 10742250 1:CAS:528:DC%2BD3cXisVWmtbc%3D (Pubitemid 30185640)
9. AW Duckworth WD Grant BE Jones R van Steenbergen 1996 Phylogenetic diversity of soda Lake Alkaliphiles FEMS Microbiol Ecol 19 181 191 10.1111/j.1574-6941.1996.tb00211.x 1:CAS:528:DyaK28XjtFejtrc%3D
10. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791 10.2307/2408678
11. Garrity GM, Holt JG (2001) Phylum AII. Euryarchaeota phy. nov. In Bergey's manual of systematic bacteriology. In: Boone DR, Castenholz RW, Garrity GM (ed) The archaea and the deeply branching and phototrophic bacteria, 2nd edn, vol 1. Springer, New York, pp. 211-355
12. S Grant D Grant EJ Brian C Kato L Li 1999 Novel archaeal phylotypes from an East African alkaline saltern Extremophiles 3 139 145 10.1007/s007920050109 10357000 1:CAS:528:DyaK1MXjs1aqu7s%3D (Pubitemid 29250569)
13. R Hartmann HD Sickinger D Oesterhelt 1980 Anaerobic growth of halobacteria Proc Natl Acad Sci USA 77 3821 3825 10.1073/pnas.77.7.3821 6933439 1:CAS:528:DyaL3cXlsVGqurk%3D (Pubitemid 10015473)
14. DG Higgins PM Sharp 1988 CLUSTAL:a package for performing multiple sequence alignments on a microcomputer Gene 73 237 244 10.1016/0378-1119(88) 90330-7 3243435 1:CAS:528:DyaL1MXhtV2ns74%3D (Pubitemid 19033800)
15. P Hugenholtz B Goebel NR Pace 1998 Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity Int J Syst Bacteriol 180 4765 4774 1:CAS:528:DyaK1cXmt1Sgu7k%3D
16. BE Jones WD Grant AW Duckworth GG Owenson 1998 Microbial diversity of soda lakes Extremophiles 2 191 200 10.1007/s007920050060 9783165 1:CAS:528:DyaK1cXmtVOqt70%3D (Pubitemid 28407999)
17. RE Ley JK Harris J Wilcox JR Spear SR Miller BM Bebout JA Maresca DA Bryant ML Sogin NR Pace 2006 Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat Appl Environ Microbiol 72 3685 3695 10.1128/AEM.72.5.3685-3695.2006 16672518 1:CAS:528:DC%2BD28XkvFWjt70%3D (Pubitemid 43728026)
18. JM Melack 1988 Primary producer dynamics associated with evaporative concentration in a shallow, equatorial soda lake (Lake Elmenteita, Kenya) Hydrobiologia 158 1 14 10.1007/BF00026264 1:CAS:528:DyaL1cXhtlOnt7c%3D
19. NM Mesbah SH Abou-El-Ela J Wiegel 2007 Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi An Natrun, Egypt Microbiol Ecol 54 598 617 10.1007/s00248-006-9193-y 1:CAS:528:DC%2BD2sXht1amtLfP (Pubitemid 47624246)
20. S Moune N Manach A Hirschler P Caumette JC Willison R Matheron 1999 Haloanaerobacter salinarius sp. nov., a novel halophilic fermentative bacterium that reduces glycine-betaine to trimethylamine with hydrogen or serine as electron donors; emendation of the genus Haloanaerobacter Int J Syst Bacteriol 49 103 112
21. F Mwaura 1999 A spatio-chemical survey of hydrogeothermal springs in Lake Elementaita Kenya Int J Salt Lake Res 8 127 138
22. GJ Olsen CR Woese 1993 Ribosomal RNA: a key to phylogeny Fed Am Soc Exp Biol J 7 113 123 1:CAS:528:DyaK3sXhtF2jtro%3D
23. GJ Olsen DL Lane SJ Giovannoni NR Pace 1986 Microbial ecology and evolution: a ribosomal RNA approach Ann Rev Microbiol 40 337 365 10.1146/annurev.mi.40.100186.002005 1:CAS:528:DyaL28XlvVOiu7s%3D
24. A Oren 2002 Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications J Ind Microbiol Biotechnol 28 55 63
25. A Oren HG Trüper 1990 Anaerobic growth of halophilic archaeobacteria by reduction of dimethylsulfoxide and trimethylamine N-oxide FEMS Microbiol Lett 70 33 36 10.1111/j.1574-6968.1990.tb03772.x 1:CAS:528:DyaK3cXltFahs74%3D
26. HC Rees WD Grant BE Jones S Heaphy 2004 Diversity of Kenyan soda Lake alkaliphiles assessed by molecular methods Extremophiles 8 63 71 10.1007/s00792-003-0361-4 15064991 1:CAS:528:DC%2BD2cXos1ertw%3D%3D (Pubitemid 40882703)
27. CE Robertson JR Spear JK Harris NR Pace 2009 Diversity and stratification of archaea in a hypersaline microbial mat Appl Environ Microbiol 75 1801 1810 10.1128/AEM.01811-08 19114531 1:CAS:528:DC%2BD1MXksFWlsLg%3D
28. JW Sahl NR Pace JR Spear 2008 Comparative molecular analysis of endoevaporitic microbial communities Appl Environ Microbiol 74 6444 6446 10.1128/AEM.00879-08 18757573 1:CAS:528:DC%2BD1cXht1ygu7fI
29. Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
30. K Smalla N Cresswell LC Mendonca-Hagler A Wolters JD Van Elsas 1993 Rapid DNA extraction protocol from soil for polymerase chain reaction-mediated amplification J Appl Bacteriol 74 78 85 1:CAS:528:DyaK3sXit1Kks7g%3D
31. KB Sørensen DE Canfield AP Teske A Oren 2005 Community composition of a hypersaline endoevaporitic microbial mat Appl Environ Microbiol 70 7352 7365 10.1128/AEM.71.11.7352-7365.2005 1:CAS:528:DC%2BD2MXht1ekurbM (Pubitemid 43194230)
32. K Tamura M Nei S Kumar 2004 Prospects for inferring very large phylogenies by using the neighbour-joining method Proc Natl Acad Sci USA 101 11030 11035 10.1073/pnas.0404206101 15258291 1:CAS:528:DC%2BD2cXmsVCmt7s%3D (Pubitemid 38989579)
33. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 10.1093/molbev/msm092 17488738 1:CAS:528:DC%2BD2sXpsVGrsL8%3D (Pubitemid 47236692)
34. BJ Tindall HNM Ross WD Grant 1984 Natronobacterium gen. nov. and Natronococcus gen. nov., two new genera of haloalkaliphilic archaebacteria Syst Appl Microbiol 5 41 57
35. F Von Wintzingerode UB Göbel E Stackebrandt 1997 Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis FEMS Microbiol Rev 21 213 229 10.1111/j.1574-6976.1997.tb00351.x
36. DM Ward R Weller MM Bateson 1990 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community Nature 345 63 65 10.1038/345063a0 1691827 1:CAS:528:DyaK3cXktlOltbo%3D (Pubitemid 20152451)
37. GA Zavarzin TN Zhilina VV Kevbrin 1999 The alkaliphilic microbial community and its functional diversity Microbiology (Moscow, English Translation) 68 503 521 1:CAS:528:DyaK1MXmvVamsr4%3D