-
1
-
-
0027343880
-
Homology of a 130-kb region enclosing the alpha-globin gene cluster, the alpha-locus controlling region, and two non-globin genes in human and mouse
-
10.1007/BF00357090, 8318735
-
Kielman MF, Smits R, Devi TS, Fodde R, Bernini LF. Homology of a 130-kb region enclosing the alpha-globin gene cluster, the alpha-locus controlling region, and two non-globin genes in human and mouse. Mamm Genome 1993, 4(6):314-323. 10.1007/BF00357090, 8318735.
-
(1993)
Mamm Genome
, vol.4
, Issue.6
, pp. 314-323
-
-
Kielman, M.F.1
Smits, R.2
Devi, T.S.3
Fodde, R.4
Bernini, L.F.5
-
2
-
-
0344721480
-
Complete sequence and gene map of a human major histocompatibility complex
-
10.1038/44853, 10553908, The MHC sequencing consortium
-
The MHC sequencing consortium Complete sequence and gene map of a human major histocompatibility complex. Nature 1999, 401(6756):921-923. 10.1038/44853, 10553908, The MHC sequencing consortium.
-
(1999)
Nature
, vol.401
, Issue.6756
, pp. 921-923
-
-
-
3
-
-
0032573579
-
Zebrafish hox clusters and vertebrate genome evolution
-
10.1126/science.282.5394.1711, 9831563
-
Amores A, Force A, Yan YL, Joly L, Amemiya C, Fritz A, Ho RK, Langeland J, Prince V, Wang YL, Westerfield M, Ekker M, Postlethwait JH. Zebrafish hox clusters and vertebrate genome evolution. Science 1998, 282(5394):1711-1714. 10.1126/science.282.5394.1711, 9831563.
-
(1998)
Science
, vol.282
, Issue.5394
, pp. 1711-1714
-
-
Amores, A.1
Force, A.2
Yan, Y.L.3
Joly, L.4
Amemiya, C.5
Fritz, A.6
Ho, R.K.7
Langeland, J.8
Prince, V.9
Wang, Y.L.10
Westerfield, M.11
Ekker, M.12
Postlethwait, J.H.13
-
4
-
-
28844477866
-
The genesis and evolution of homeobox gene clusters
-
10.1038/nrg1723, 16341069
-
Garcia-Fernandez J. The genesis and evolution of homeobox gene clusters. Nat Rev Genet 2005, 6(12):881-892. 10.1038/nrg1723, 16341069.
-
(2005)
Nat Rev Genet
, vol.6
, Issue.12
, pp. 881-892
-
-
Garcia-Fernandez, J.1
-
5
-
-
1842427830
-
The evolutionary dynamics of eukaryotic gene order
-
10.1038/nrg1319, 15131653
-
Hurst LD, Pal C, Lercher MJ. The evolutionary dynamics of eukaryotic gene order. Nat Rev Genet 2004, 5(4):299-310. 10.1038/nrg1319, 15131653.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.4
, pp. 299-310
-
-
Hurst, L.D.1
Pal, C.2
Lercher, M.J.3
-
6
-
-
25844496592
-
The role of chromatin structure in regulating the expression of clustered genes
-
10.1038/nrg1688, 16160692
-
Sproul D, Gilbert N, Bickmore WA. The role of chromatin structure in regulating the expression of clustered genes. Nat Rev Genet 2005, 6(10):775-781. 10.1038/nrg1688, 16160692.
-
(2005)
Nat Rev Genet
, vol.6
, Issue.10
, pp. 775-781
-
-
Sproul, D.1
Gilbert, N.2
Bickmore, W.A.3
-
7
-
-
39149119250
-
Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes
-
10.1016/j.ygeno.2007.11.002, 18082363
-
Michalak P. Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes. Genomics 2008, 91(3):243-248. 10.1016/j.ygeno.2007.11.002, 18082363.
-
(2008)
Genomics
, vol.91
, Issue.3
, pp. 243-248
-
-
Michalak, P.1
-
8
-
-
0035895502
-
The human transcriptome map: clustering of highly expressed genes in chromosomal domains
-
10.1126/science.1056794, 11181992
-
Caron H, van Schaik B, Mee M, Baas F, Riggins G, van Sluis P, Hermus MC, van Asperen R, Boon K, Voute PA, Heisterkamp S, van Kampen A, Versteeg R. The human transcriptome map: clustering of highly expressed genes in chromosomal domains. Science 2001, 291(5507):1289-1292. 10.1126/science.1056794, 11181992.
-
(2001)
Science
, vol.291
, Issue.5507
, pp. 1289-1292
-
-
Caron, H.1
van Schaik, B.2
Mee, M.3
Baas, F.4
Riggins, G.5
van Sluis, P.6
Hermus, M.C.7
van Asperen, R.8
Boon, K.9
Voute, P.A.10
Heisterkamp, S.11
van Kampen, A.12
Versteeg, R.13
-
9
-
-
0141854009
-
The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
-
10.1101/gr.1649303, 403669, 12915492
-
Versteeg R, van Schaik BD, van Batenburg MF, Roos M, Monajemi R, Caron H, Bussemaker HJ, van Kampen AH. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Res 2003, 13(9):1998-2004. 10.1101/gr.1649303, 403669, 12915492.
-
(2003)
Genome Res
, vol.13
, Issue.9
, pp. 1998-2004
-
-
Versteeg, R.1
van Schaik, B.D.2
van Batenburg, M.F.3
Roos, M.4
Monajemi, R.5
Caron, H.6
Bussemaker, H.J.7
van Kampen, A.H.8
-
10
-
-
0003328368
-
Evidence for large domains of similarly expressed genes in the Drosophila genome
-
10.1186/1475-4924-1-5, 117248, 12144710
-
Spellman PT, Rubin GM. Evidence for large domains of similarly expressed genes in the Drosophila genome. J Biol 2002, 1(1):5. 10.1186/1475-4924-1-5, 117248, 12144710.
-
(2002)
J Biol
, vol.1
, Issue.1
, pp. 5
-
-
Spellman, P.T.1
Rubin, G.M.2
-
11
-
-
0037069672
-
Large clusters of co-expressed genes in the Drosophila genome
-
10.1038/nature01216, 12478293
-
Boutanaev AM, Kalmykova AI, Shevelyov YY, Nurminsky DI. Large clusters of co-expressed genes in the Drosophila genome. Nature 2002, 420(6916):666-669. 10.1038/nature01216, 12478293.
-
(2002)
Nature
, vol.420
, Issue.6916
, pp. 666-669
-
-
Boutanaev, A.M.1
Kalmykova, A.I.2
Shevelyov, Y.Y.3
Nurminsky, D.I.4
-
12
-
-
20844440723
-
Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues
-
10.1073/pnas.0407672102, 1143582,1143582, 15939889
-
Mijalski T, Harder A, Halder T, Kersten M, Horsch M, Strom TM, Liebscher HV, Lottspeich F, de Angelis MH, Beckers J. Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues. Proc Natl Acad Sci USA 2005, 102(24):8621-8626. 10.1073/pnas.0407672102, 1143582,1143582, 15939889.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.24
, pp. 8621-8626
-
-
Mijalski, T.1
Harder, A.2
Halder, T.3
Kersten, M.4
Horsch, M.5
Strom, T.M.6
Liebscher, H.V.7
Lottspeich, F.8
de Angelis, M.H.9
Beckers, J.10
-
13
-
-
14544301584
-
Clusters of co-expressed genes in mammalian genomes are conserved by natural selection
-
10.1093/molbev/msi062, 15574806
-
Singer GA, Lloyd AT, Huminiecki LB, Wolfe KH. Clusters of co-expressed genes in mammalian genomes are conserved by natural selection. Mol Biol Evol 2005, 22(3):767-775. 10.1093/molbev/msi062, 15574806.
-
(2005)
Mol Biol Evol
, vol.22
, Issue.3
, pp. 767-775
-
-
Singer, G.A.1
Lloyd, A.T.2
Huminiecki, L.B.3
Wolfe, K.H.4
-
14
-
-
34548405530
-
Domain-wide regulation of gene expression in the human genome
-
10.1101/gr.6276007, 1950897, 17693573
-
Gierman HJ, Indemans MH, Koster J, Goetze S, Seppen J, Geerts D, van Driel R, Versteeg R. Domain-wide regulation of gene expression in the human genome. Genome Res 2007, 17(9):1286-1295. 10.1101/gr.6276007, 1950897, 17693573.
-
(2007)
Genome Res
, vol.17
, Issue.9
, pp. 1286-1295
-
-
Gierman, H.J.1
Indemans, M.H.2
Koster, J.3
Goetze, S.4
Seppen, J.5
Geerts, D.6
van Driel, R.7
Versteeg, R.8
-
15
-
-
23944446057
-
Replication and transcription: shaping the landscape of the genome
-
10.1038/nrg1673, 16094312
-
Chakalova L, Debrand E, Mitchell JA, Osborne CS, Fraser P. Replication and transcription: shaping the landscape of the genome. Nat Rev Genet 2005, 6(9):669-677. 10.1038/nrg1673, 16094312.
-
(2005)
Nat Rev Genet
, vol.6
, Issue.9
, pp. 669-677
-
-
Chakalova, L.1
Debrand, E.2
Mitchell, J.A.3
Osborne, C.S.4
Fraser, P.5
-
16
-
-
0033553877
-
Differences in the localization and morphology of chromosomes in the human nucleus
-
10.1083/jcb.145.6.1119, 2133153, 10366586
-
Croft JA, Bridger JM, Boyle S, Perry P, Teague P, Bickmore WA. Differences in the localization and morphology of chromosomes in the human nucleus. J Cell Biol 1999, 145(6):1119-1131. 10.1083/jcb.145.6.1119, 2133153, 10366586.
-
(1999)
J Cell Biol
, vol.145
, Issue.6
, pp. 1119-1131
-
-
Croft, J.A.1
Bridger, J.M.2
Boyle, S.3
Perry, P.4
Teague, P.5
Bickmore, W.A.6
-
17
-
-
0034748986
-
Arrangements of macro- and microchromosomes in chicken cells
-
10.1023/A:1012447318535, 11721954
-
Habermann FA, Cremer M, Walter J, Kreth G, von Hase J, Bauer K, Wienberg J, Cremer C, Cremer T, Solovei I. Arrangements of macro- and microchromosomes in chicken cells. Chromosome Res 2001, 9(7):569-584. 10.1023/A:1012447318535, 11721954.
-
(2001)
Chromosome Res
, vol.9
, Issue.7
, pp. 569-584
-
-
Habermann, F.A.1
Cremer, M.2
Walter, J.3
Kreth, G.4
von Hase, J.5
Bauer, K.6
Wienberg, J.7
Cremer, C.8
Cremer, T.9
Solovei, I.10
-
18
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
10.1038/nature03154, 15592404, International Chicken Genome Sequencing Consortium
-
International Chicken Genome Sequencing Consortium Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432(7018):695-716. 10.1038/nature03154, 15592404, International Chicken Genome Sequencing Consortium.
-
(2004)
Nature
, vol.432
, Issue.7018
, pp. 695-716
-
-
-
19
-
-
0030144304
-
Micro vs. macro: structural-functional organization of avian micro- and macrochromosomes
-
Rodionov AV. Micro vs. macro: structural-functional organization of avian micro- and macrochromosomes. Genetika 1996, 32(5):597-608.
-
(1996)
Genetika
, vol.32
, Issue.5
, pp. 597-608
-
-
Rodionov, A.V.1
-
20
-
-
0345458981
-
Karyological relationships between the Cyptobranchid salamanders
-
Morescalchi A, Odierna G, Olmo E. Karyological relationships between the Cyptobranchid salamanders. Specialia 1977, 15:1579.
-
(1977)
Specialia
, vol.15
, pp. 1579
-
-
Morescalchi, A.1
Odierna, G.2
Olmo, E.3
-
21
-
-
0018792722
-
Karyology of the primitive salamanders, family Hynobiidae
-
10.1007/BF01962768, 510468
-
Morescalchi A, Odierna G, Olmo E. Karyology of the primitive salamanders, family Hynobiidae. Experientia 1979, 35:1434-1436. 10.1007/BF01962768, 510468.
-
(1979)
Experientia
, vol.35
, pp. 1434-1436
-
-
Morescalchi, A.1
Odierna, G.2
Olmo, E.3
-
22
-
-
0018900403
-
Chromosomal evolution in Serpentes: a comparison of G and C chromosome banding patterns of some Colubrid and Boid genera
-
Mengden GA, Stock AD. Chromosomal evolution in Serpentes: a comparison of G and C chromosome banding patterns of some Colubrid and Boid genera. Chromosoma 1980, 79:53-64.
-
(1980)
Chromosoma
, vol.79
, pp. 53-64
-
-
Mengden, G.A.1
Stock, A.D.2
-
23
-
-
61849153558
-
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
-
10.1101/gr.086538.108, 2661806, 19088305
-
Groenen MA, Wahlberg P, Foglio M, Cheng HH, Megens HJ, Crooijmans RP, Besnier F, Lathrop M, Muir WM, Wong GK, Gut I, Andersson L. A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res 2009, 19(3):510-519. 10.1101/gr.086538.108, 2661806, 19088305.
-
(2009)
Genome Res
, vol.19
, Issue.3
, pp. 510-519
-
-
Groenen, M.A.1
Wahlberg, P.2
Foglio, M.3
Cheng, H.H.4
Megens, H.J.5
Crooijmans, R.P.6
Besnier, F.7
Lathrop, M.8
Muir, W.M.9
Wong, G.K.10
Gut, I.11
Andersson, L.12
-
24
-
-
41549121981
-
National Center for Biotechnology Information (NCBI) Gene Expression Omnibus
-
National Center for Biotechnology Information (NCBI) Gene Expression Omnibus. , http://www.ncbi.nlm.nih.gov/geo/
-
-
-
-
25
-
-
12744263078
-
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
-
10.1101/gr.3002305, 540283, 15590940
-
Bourque G, Zdobnov EM, Bork P, Pevzner PA, Tesler G. Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages. Genome Res 2005, 15(1):98-110. 10.1101/gr.3002305, 540283, 15590940.
-
(2005)
Genome Res
, vol.15
, Issue.1
, pp. 98-110
-
-
Bourque, G.1
Zdobnov, E.M.2
Bork, P.3
Pevzner, P.A.4
Tesler, G.5
-
26
-
-
76749089275
-
Human Transcriptome Map website
-
Human Transcriptome Map website. , http://bioinfo.amc.uva.nl/HTMseq/
-
-
-
-
27
-
-
84874661559
-
Gene Ontology website
-
Gene Ontology website. , http://www.geneontology.org/
-
-
-
-
28
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
10.1093/bioinformatics/btl567, 17098774
-
Falcon S, Gentleman R. Using GOstats to test gene lists for GO term association. Bioinformatics 2007, 23(2):257-258. 10.1093/bioinformatics/btl567, 17098774.
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
-
29
-
-
34250172721
-
The three-dimensional structure of human interphase chromosomes is related to the transcriptome map
-
10.1128/MCB.00208-07, 1900058, 17420274
-
Goetze S, Mateos-Langerak J, Gierman HJ, de Leeuw W, Giromus O, Indemans MH, Koster J, Ondrej V, Versteeg R, van Driel R. The three-dimensional structure of human interphase chromosomes is related to the transcriptome map. Mol Cell Biol 2007, 27(12):4475-4487. 10.1128/MCB.00208-07, 1900058, 17420274.
-
(2007)
Mol Cell Biol
, vol.27
, Issue.12
, pp. 4475-4487
-
-
Goetze, S.1
Mateos-Langerak, J.2
Gierman, H.J.3
de Leeuw, W.4
Giromus, O.5
Indemans, M.H.6
Koster, J.7
Ondrej, V.8
Versteeg, R.9
van Driel, R.10
-
30
-
-
0036675923
-
Minimal introns are not "junk"
-
10.1101/gr.224602, 186636, 12176926
-
Yu J, Yang Z, Kibukawa M, Paddock M, Passey DA, Wong GK. Minimal introns are not "junk". Genome Res 2002, 12(8):1185-1189. 10.1101/gr.224602, 186636, 12176926.
-
(2002)
Genome Res
, vol.12
, Issue.8
, pp. 1185-1189
-
-
Yu, J.1
Yang, Z.2
Kibukawa, M.3
Paddock, M.4
Passey, D.A.5
Wong, G.K.6
-
31
-
-
0036699596
-
Selection for short introns in highly expressed genes
-
Castillo-Davis CI, Mekhedov SL, Hartl DL, Koonin EV, Kondrashov FA. Selection for short introns in highly expressed genes. Nat Genet 2002, 31(4):415-418.
-
(2002)
Nat Genet
, vol.31
, Issue.4
, pp. 415-418
-
-
Castillo-Davis, C.I.1
Mekhedov, S.L.2
Hartl, D.L.3
Koonin, E.V.4
Kondrashov, F.A.5
-
32
-
-
24044522270
-
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
-
10.1093/bioinformatics/bti525, 16082012
-
Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, Brazma A, Huber W. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics 2005, 21(16):3439-3440. 10.1093/bioinformatics/bti525, 16082012.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3439-3440
-
-
Durinck, S.1
Moreau, Y.2
Kasprzyk, A.3
Davis, S.4
De Moor, B.5
Brazma, A.6
Huber, W.7
-
33
-
-
12744261452
-
Evolution and functional classification of vertebrate gene deserts
-
10.1101/gr.3015505, 540279, 15590943
-
Ovcharenko I, Loots GG, Nobrega MA, Hardison RC, Miller W, Stubbs L. Evolution and functional classification of vertebrate gene deserts. Genome Res 2005, 15(1):137-145. 10.1101/gr.3015505, 540279, 15590943.
-
(2005)
Genome Res
, vol.15
, Issue.1
, pp. 137-145
-
-
Ovcharenko, I.1
Loots, G.G.2
Nobrega, M.A.3
Hardison, R.C.4
Miller, W.5
Stubbs, L.6
-
34
-
-
5344244656
-
R: A language and environment for statistical computing
-
R Foundation for Statistical Computing, Vienna, Austria, R Development Core Team
-
R Development Core Team R: A language and environment for statistical computing. 2008, R Foundation for Statistical Computing, Vienna, Austria, R Development Core Team.
-
(2008)
-
-
-
35
-
-
33644872577
-
Limma: linear models for microarray data
-
New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W
-
Smyth GK. Limma: linear models for microarray data. Bioinformatics and Computational Biology Solutions using R and Bioconductor 2005, 397-420. New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W.
-
(2005)
Bioinformatics and Computational Biology Solutions using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
36
-
-
76749096478
-
Ark-Genomics, Roslin institute, UK
-
Ark-Genomics, Roslin institute, UK. , http://www.ark-genomics.org/
-
-
-
-
37
-
-
76749096911
-
EADGENE Oligo Set Annotation Files homepage
-
EADGENE Oligo Set Annotation Files homepage. , http://www.eadgene.info/TheProject/Integration/Biologicalresourcesandfac ilitiesWP1/EADGENEOligoSetsAnnotationFiles/tabid/324/Default.aspx
-
-
-
-
38
-
-
34249048180
-
Ensembl Genome Database
-
Ensembl Genome Database. , http://www.ensembl.org/
-
-
-
|