The putative Bacillus subtilis l,d-transpeptidase YciB is a lipoprotein that localizes to the cell poles in a divisome-dependent manner

Archives of Microbiology

Volumn 192, Issue 1, 2010, Pages 57-68

  Bramkamp, Marc ^a  

^a UNIVERSITY OF COLOGNE   (Germany)

Author keywords

Cell division; L,d transpeptidase; Lipoprotein; Peptidoglycan synthesis; Protein localization; YciB

Indexed keywords

GAMMA GLUTAMYLTRANSFERASE; LEVO,DEXTRO TRANSPEPTIDASE; LIPOPROTEIN; PDZ PROTEIN; PROTEIN YCIB; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; CELL DIVISION; CELL KINETICS; CONTROLLED STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN PURIFICATION;

ADENOSINE TRIPHOSPHATASES; BACILLUS SUBTILIS; BACTERIA; BACTERIAL OUTER MEMBRANE PROTEINS; CELL CYCLE PROTEINS; CELL POLARITY; CELL WALL; DNA, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; LIPOPROTEINS; MEMBRANE PROTEINS; MUTATION; PENICILLIN-BINDING PROTEINS; PEPTIDYL TRANSFERASES; PROTEIN SUBUNITS; RECOMBINANT FUSION PROTEINS; SCHIZOSACCHAROMYCES POMBE PROTEINS; SPORES, BACTERIAL;

BACILLUS SUBTILIS;

EID: 76749105658     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-009-0532-5     Document Type: Article

References (38)

1. DW Adams J Errington 2009 Bacterial cell division: assembly, maintenance and disassembly of the Z ring Nat Rev Microbiol 7 642 653 10.1038/nrmicro2198 1:CAS:528:DC%2BD1MXpvFCkt7k%3D 19680248
2. SF Altschul, et al. 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 10.1093/nar/25.17.3389 1:CAS:528:DyaK2sXlvFyhu7w%3D 9254694 (Pubitemid 27359211)
3. JC Barna DH Williams 1984 The structure and mode of action of glycopeptide antibiotics of the vancomycin group Annu Rev Microbiol 38 339 357 10.1146/annurev.mi.38.100184.002011 1:CAS:528:DyaL2cXmt1aisrg%3D 6388496
4. S Biarrotte-Sorin, et al. 2006 Crystal structure of a novel beta-lactam-insensitive peptidoglycan transpeptidase J Mol Biol 359 533 538 10.1016/j.jmb.2006.03.014 1:CAS:528:DC%2BD28XltFGjtLk%3D 16647082 (Pubitemid 43786404)
5. J Bielnicki Y Devedjiev U Derewenda Z Dauter A Joachimiak ZS Derewenda 2006 B. subtilis YkuD protein at 2.0 Å resolution: insights into the structure and function of a novel, ubiquitous family of bacterial enzymes Proteins 62 144 151 10.1002/prot.20702 1:CAS:528:DC%2BD28XivF2msA%3D%3D 16287140 (Pubitemid 43063012)
6. H Blum H Beier HJ Gross 1987 Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels Electrophoresis 8 93 99 10.1002/elps. 1150080203 1:CAS:528:DyaL2sXhsFagtLc%3D
7. M Bramkamp R Emmins L Weston C Donovan RA Daniel J Errington 2008 A novel component of the division-site selection system of Bacillus subtilis and a new mode of action for the division inhibitor MinCD Mol Microbiol 70 1556 1569 10.1111/j.1365-2958.2008.06501.x 1:CAS:528:DC%2BD1cXhsFaks7bJ 19019154
8. R Carballido-Lopez A Formstone 2007 Shape determination in Bacillus subtilis Curr Opin Microbiol 10 611 616 10.1016/j.mib.2007.09.008 1:CAS:528:DC%2BD2sXhtlyks7%2FI 17981078 (Pubitemid 350180587)
9. J Cremniter, et al. 2006 Novel mechanism of resistance to glycopeptide antibiotics in Enterococcus faecium J Biol Chem 281 32254 32262 10.1074/jbc.M606920200 1:CAS:528:DC%2BD28XhtFSrsbbO 16943188 (Pubitemid 46036779)
10. RA Daniel J Errington 2003 Control of cell morphogenesis in bacteria: two distinct ways to make a rod-shaped cell Cell 113 767 776 10.1016/S0092-8674(03) 00421-5 1:CAS:528:DC%2BD3sXkvVektL8%3D 12809607 (Pubitemid 36724940)
11. J Errington RA Daniel DJ Scheffers 2003 Cytokinesis in bacteria Microbiol Mol Biol Rev 67 52 65 10.1128/MMBR.67.1.52-65.2003 1:CAS:528: DC%2BD3sXis1yjsLo%3D 12626683 (Pubitemid 36314784)
12. M Firczuk M Bochtler 2007 Folds and activities of peptidoglycan amidases FEMS Microbiol Rev 31 676 691 10.1111/j.1574-6976.2007.00084.x 1:CAS:528:DC%2BD2sXhtlSitLvJ 17888003 (Pubitemid 47621763)
13. A Gaballa T Wang RW Ye JD Helmann 2002 Functional analysis of the Bacillus subtilis Zur regulon J Bacteriol 184 6508 6514 10.1128/JB.184.23.6508- 6514.2002 1:CAS:528:DC%2BD38XovFOnsbs%3D 12426338 (Pubitemid 35332554)
14. P Gouet E Courcelle DI Stuart F Metoz 1999 ESPript: analysis of multiple sequence alignments in PostScript Bioinformatics 15 305 308 10.1093/ bioinformatics/15.4.305 1:CAS:528:DyaK1MXjslCmtrY%3D 10320398 (Pubitemid 29213756)
15. EJ Harry K Pogliano R Losick 1995 Use of immunofluorescence to visualize cell-specific gene expression during sporulation in Bacillus subtilis J Bacteriol 177 3386 3393 1:CAS:528:DyaK2MXmt1SkurY%3D 7768847
16. JV Höltje 1998 Growth of the stress-bearing and shape-maintaining murein sacculus of Escherichia coli Microbiol Mol Biol Rev 62 181 203 9529891
17. P Jemth S Gianni 2007 PDZ domains: folding and binding Biochemistry 46 8701 8708 10.1021/bi7008618 1:CAS:528:DC%2BD2sXnsF2js7g%3D 17620015 (Pubitemid 47204435)
18. LA Kelley RM MacCallum MJ Sternberg 2000 Enhanced genome annotation using structural profiles in the program 3D-PSSM J Mol Biol 299 499 520 10.1006/jmbi.2000.3741 1:CAS:528:DC%2BD3cXktVKlsL4%3D 10860755
19. T Kodama H Takamatsu K Asai N Ogasawara Y Sadaie K Watabe 2000 Synthesis and characterization of the spore proteins of Bacillus subtilis YdhD, YkuD, and YkvP, which carry a motif conserved among cell wall binding proteins J Biochem 128 655 663 1:CAS:528:DC%2BD3cXosFOjs70%3D 11011148
20. UK Laemmli 1970 Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 680 685 10.1038/227680a0 1:CAS:528:DC%2BD3MXlsFags7s%3D 5432063
21. MA Larkin, et al. 2007 Clustal W and Clustal X version 2.0 Bioinformatics 23 2947 2948 10.1093/bioinformatics/btm404 1:CAS:528:DC%2BD2sXhtlaqsL%2FM 17846036 (Pubitemid 350162903)
22. M Lavollay, et al. 2009 The beta-lactam-sensitive D, d-carboxypeptidase activity of Pbp4 controls the l,d and d,d transpeptidation pathways in Corynebacterium jeikeium Mol Microbiol 74 650 661 10.1111/j.1365-2958.2009. 06887.x 1:CAS:528:DC%2BD1MXhsVKisLrE 19807868
23. PJ Lewis AL Marston 1999 GFP vectors for controlled expression and dual labelling of protein fusions in Bacillus subtilis Gene 227 101 110 10.1016/S0378-1119(98)00580-0 1:CAS:528:DyaK1MXht1aitL8%3D 9931458 (Pubitemid 29071236)
24. S Magnet, et al. 2007 Specificity of l,d-transpeptidases from gram-positive bacteria producing different peptidoglycan chemotypes J Biol Chem 282 13151 13159 10.1074/jbc.M610911200 1:CAS:528:DC%2BD2sXks1GhtbY%3D 17311917 (Pubitemid 47100523)
25. S Magnet, et al. 2007 Identification of the l,d-transpeptidases responsible for attachment of the Braun lipoprotein to Escherichia coli peptidoglycan J Bacteriol 189 3927 3931 10.1128/JB.00084-07 1:CAS:528: DC%2BD2sXlvFGju7k%3D 17369299 (Pubitemid 46740192)
26. JL Mainardi R Legrand M Arthur B Schoot J van Heijenoort L Gutmann 2000 Novel mechanism of beta-lactam resistance due to bypass of DD-transpeptidation in Enterococcus faecium J Biol Chem 275 16490 16496 10.1074/jbc.M909877199 1:CAS:528:DC%2BD3cXjvFCntLo%3D 10748168 (Pubitemid 30398871)
27. JL Mainardi, et al. 2005 A novel peptidoglycan cross-linking enzyme for a beta-lactam-resistant transpeptidation pathway J Biol Chem 280 38146 38152 10.1074/jbc.M507384200 1:CAS:528:DC%2BD2MXht1Skt7fF 16144833 (Pubitemid 43853709)
28. JL Mainardi R Villet TD Bugg C Mayer M Arthur 2008 Evolution of peptidoglycan biosynthesis under the selective pressure of antibiotics in Gram-positive bacteria FEMS Microbiol Rev 32 386 408 10.1111/j.1574-6976.2007. 00097.x 1:CAS:528:DC%2BD1cXjt1Gitbg%3D 18266857 (Pubitemid 351257816)
29. SR Partridge J Errington 1993 The importance of morphological events and intercellular interactions in the regulation of prespore-specific gene expression during sporulation in Bacillus subtilis Mol Microbiol 8 945 955 10.1111/j.1365-2958.1993.tb01639.x 1:CAS:528:DyaK3sXkvVygs74%3D 8355618
30. JE Patrick DB Kearns 2008 MinJ (YvjD) is a topological determinant of cell division in Bacillus subtilis Mol Microbiol 70 1166 1179 10.1111/j.1365-2958.2008.06469.x 1:CAS:528:DC%2BD1cXhsVKitbzJ 18976281
31. CP Ponting C Phillips KE Davies DJ Blake 1997 PDZ domains: targeting signalling molecules to sub-membranous sites Bioessays 19 469 479 10.1002/bies.950190606 1:CAS:528:DyaK2sXks1Squr4%3D 9204764
32. AP Pugsley ST Cole 1987 An unmodified form of the ColE2 lysis protein, an envelope lipoprotein, retains reduced ability to promote colicin E2 release and lysis of producing cells J Gen Microbiol 133 2411 2420 1:CAS:528: DyaL2sXlvFClt74%3D 3329213
33. DJ Scheffers MG Pinho 2005 Bacterial cell wall synthesis: new insights from localization studies Microbiol Mol Biol Rev 69 585 607 10.1128/MMBR.69.4. 585-607.2005 1:CAS:528:DC%2BD28Xks1WmtA%3D%3D 16339737 (Pubitemid 41798464)
34. DJ Scheffers LJ Jones J Errington 2004 Several distinct localization patterns for penicillin-binding proteins in Bacillus subtilis Mol Microbiol 51 749 764 10.1046/j.1365-2958.2003.03854.x 1:CAS:528:DC%2BD2cXhtlWitb4%3D 14731276 (Pubitemid 38233941)
35. LK Siu 2002 Antibiotics: action and resistance in gram-negative bacteria J Microbiol Immunol Infect 35 1 11 1:CAS:528:DC%2BD38Xjt1Chsb8%3D 11950113
36. H Tjalsma A Bolhuis JD Jongbloed S Bron JM van Dijl 2000 Signal peptide-dependent protein transport in Bacillus subtilis: a genome-based survey of the secretome Microbiol Mol Biol Rev 64 515 547 10.1128/MMBR.64.3.515-547. 2000 1:CAS:528:DC%2BD3cXntVCgt7c%3D 10974125
37. V Vagner E Dervyn SD Ehrlich 1998 A vector for systematic gene inactivation in Bacillus subtilis Microbiology 144 Pt 11 3097 3104 10.1099/00221287-144-11-3097 1:CAS:528:DyaK1cXnsFemtbc%3D 9846745
38. J van Heijenoort 2001 Formation of the glycan chains in the synthesis of bacterial peptidoglycan Glycobiology 11 25R 36R 10.1093/glycob/11.3.25R 11320055 (Pubitemid 32471992)