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Volumn 34, Issue 2, 2010, Pages 194-199

A cross-validation procedure for general pedigrees and matched odds ratio fitness metric implemented for the multifactor dimensionality reduction pedigree disequilibrium test

Author keywords

Bioinformatics; Complex disease; Epistasis; Family based association; MDR PDT

Indexed keywords

ALGORITHM; ARTICLE; CONTROLLED STUDY; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; HEREDITY; HUMAN; PEDIGREE; PREDICTION; VALIDATION PROCESS;

EID: 76649140083     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20447     Document Type: Article
Times cited : (5)

References (21)
  • 1
    • 2442709349 scopus 로고    scopus 로고
    • Pedigree generation for analysis of genetic linkage and association
    • Bass MP, Martin ER, Hauser ER. 2004. Pedigree generation for analysis of genetic linkage and association. Pac Symp Biocomput 9:93-103.
    • (2004) Pac Symp Biocomput , vol.9 , pp. 93-103
    • Bass, M.P.1    Martin, E.R.2    Hauser, E.R.3
  • 2
    • 85012688561 scopus 로고
    • Princeton, NJ: Princeton University Press
    • Bellman RE. 1961. Dynamic Programming. Princeton, NJ: Princeton University Press.
    • (1961) Dynamic Programming
    • Bellman, R.E.1
  • 3
    • 44949257101 scopus 로고    scopus 로고
    • Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction
    • Bush WS, Edwards TL, Dudek SM, McKinney BA, Ritchie MD. 2008. Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. BMC Bioinformatics 9:238.
    • (2008) BMC Bioinformatics , vol.9 , pp. 238
    • Bush, W.S.1    Edwards, T.L.2    Dudek, S.M.3    McKinney, B.A.4    Ritchie, M.D.5
  • 4
    • 1942422934 scopus 로고
    • Model uncertainty, data mining and statistical inference
    • Chatfield C. 1995. Model uncertainty, data mining and statistical inference. J Royal Stat Soc A 158:419-466.
    • (1995) J Royal Stat Soc A , vol.158 , pp. 419-466
    • Chatfield, C.1
  • 6
    • 2942517830 scopus 로고    scopus 로고
    • An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene interactions on risk of myocardial infarction: The importance of model validation
    • Coffey CS, Hebert PR, Ritchie MD, Krumholz HM, Gaziano JM, Ridker PM, Brown NJ, Vaughan DE, Moore JH. 2004b. An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene interactions on risk of myocardial infarction: the importance of model validation. BMC Bioinformatics 5:49.
    • (2004) BMC Bioinformatics , vol.5 , pp. 49
    • Coffey, C.S.1    Hebert, P.R.2    Ritchie, M.D.3    Krumholz, H.M.4    Gaziano, J.M.5    Ridker, P.M.6    Brown, N.J.7    Vaughan, D.E.8    Moore, J.H.9
  • 9
    • 67649432541 scopus 로고    scopus 로고
    • Edwards TL, Pericak-Vance M, Gilbert JR, Haines JL, Martin ER, Ritchie MD. 2009. An association analysis of Alzheimer disease candidate genes detects an ancestral risk haplotype clade in ACE and putative multilocus association between ACE, A2M, and LRRTM3. Am J Med Genet B Neuropsychiatr Genet 150B:721-735.
    • Edwards TL, Pericak-Vance M, Gilbert JR, Haines JL, Martin ER, Ritchie MD. 2009. An association analysis of Alzheimer disease candidate genes detects an ancestral risk haplotype clade in ACE and putative multilocus association between ACE, A2M, and LRRTM3. Am J Med Genet B Neuropsychiatr Genet 150B:721-735.
  • 10
    • 4544244613 scopus 로고    scopus 로고
    • Research issues and strategies for genomic and proteomic biomarker discovery and validation: A statistical perspective
    • Feng Z, Prentice R, Srivastava S. 2004. Research issues and strategies for genomic and proteomic biomarker discovery and validation: a statistical perspective. Pharmacogenomics 6:709-719.
    • (2004) Pharmacogenomics , vol.6 , pp. 709-719
    • Feng, Z.1    Prentice, R.2    Srivastava, S.3
  • 12
    • 84959801619 scopus 로고
    • Statistical aspects of the analysis of data from retrospective studies of disease
    • Mantel N, Haenszel W. 1959. Statistical aspects of the analysis of data from retrospective studies of disease. J Natl Cancer Inst 22:719-748.
    • (1959) J Natl Cancer Inst , vol.22 , pp. 719-748
    • Mantel, N.1    Haenszel, W.2
  • 14
    • 32044462757 scopus 로고    scopus 로고
    • A novel method to identify gene-gene effects in nuclear families: The MDRPDT
    • Martin ER, Ritchie MD, Hahn L, Kang S, Moore JH. 2006. A novel method to identify gene-gene effects in nuclear families: the MDRPDT. Genet Epidemiol 2:111-123.
    • (2006) Genet Epidemiol , vol.2 , pp. 111-123
    • Martin, E.R.1    Ritchie, M.D.2    Hahn, L.3    Kang, S.4    Moore, J.H.5
  • 15
    • 2442432588 scopus 로고    scopus 로고
    • Routine discovery of high-order epistasis models for computational studies in human genetics
    • Moore JH, Hahn LW, Ritchie MD, Thornton TA, White B. 2004. Routine discovery of high-order epistasis models for computational studies in human genetics. Appl Soft Comput 4:79-86.
    • (2004) Appl Soft Comput , vol.4 , pp. 79-86
    • Moore, J.H.1    Hahn, L.W.2    Ritchie, M.D.3    Thornton, T.A.4    White, B.5
  • 16
    • 33747613579 scopus 로고    scopus 로고
    • The effect of reduction in crossvalidation intervals on the performance of multifactor dimensionality reduction
    • Motsinger AA, Ritchie MD. 2006. The effect of reduction in crossvalidation intervals on the performance of multifactor dimensionality reduction. Genet Epidemiol 6:546-555.
    • (2006) Genet Epidemiol , vol.6 , pp. 546-555
    • Motsinger, A.A.1    Ritchie, M.D.2
  • 17
    • 1842539516 scopus 로고    scopus 로고
    • A simple correction for multiple testing for singlenucleotide polymorphisms in linkage disequilibrium with each other
    • Nyholt DR. 2004. A simple correction for multiple testing for singlenucleotide polymorphisms in linkage disequilibrium with each other. Am J Hum Genet 4:765-769.
    • (2004) Am J Hum Genet , vol.4 , pp. 765-769
    • Nyholt, D.R.1
  • 18
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • Ritchie MD, Hahn LW, Roodi N, Bailey LR, Dupont WD, Parl FF, Moore JH. 2001. Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am J Hum Genet 1:138-147.
    • (2001) Am J Hum Genet , vol.1 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7
  • 19
    • 0037310257 scopus 로고    scopus 로고
    • Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity
    • Ritchie MD, Hahn LW, Moore JH. 2003. Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity. Genet Epidemiol 2:150-157.
    • (2003) Genet Epidemiol , vol.2 , pp. 150-157
    • Ritchie, M.D.1    Hahn, L.W.2    Moore, J.H.3
  • 20
    • 23044449472 scopus 로고    scopus 로고
    • Extension of the SIMLA package for generating pedigrees with complex inheritance patterns: Environmental covariates, gene-gene and gene-environment interaction. Stat Appl Genet Mol Biol 4:Article 15
    • Jun 6
    • Schmidt M, Hauser ER, Martin ER, Schmidt S. 2005. Extension of the SIMLA package for generating pedigrees with complex inheritance patterns: environmental covariates, gene-gene and gene-environment interaction. Stat Appl Genet Mol Biol 4:Article 15. Epub 2005 Jun 6.
    • (2005) Epub , pp. 2005
    • Schmidt, M.1    Hauser, E.R.2    Martin, E.R.3    Schmidt, S.4


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