Genome diversity in the genera Fructobacillus, Leuconostoc and Weissella determined by physical and genetic mapping

Microbiology

Volumn 156, Issue 2, 2010, Pages 420-430

  Chelo, Ivo M ^a,b   Zé Zé, Líbia ^a,c   Tenreiro, Rogério ^a  

^a UNIVERSITY OF LISBON   (Portugal)

^b INSTITUTO GULBENKIAN DE CIÊNCIA   (Portugal)

^c NATIONAL INSTITUTE OF HEALTH DR RICARDO JORGE   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

RESTRICTION ENDONUCLEASE;

ARTICLE; BACTERIAL CHROMOSOME; CHROMOSOME ANALYSIS; CHROMOSOME REARRANGEMENT; CONTROLLED STUDY; FRUCTOBACILLUS; GENE LOCATION; GENE MAPPING; GENETIC ANALYSIS; GENETIC CONSERVATION; GENETIC VARIABILITY; LEUCONOSTOC; LEUCONOSTOCACEAE; MICROBIAL DIVERSITY; MOLECULAR PROBE; NONHUMAN; OPERON; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; SOUTHERN BLOTTING; SPECIES DIFFERENCE; STRAIN DIFFERENCE; WEISSELLA;

CHROMOSOME MAPPING; CHROMOSOMES, BACTERIAL; DNA RESTRICTION ENZYMES; ELECTROPHORESIS, GEL, PULSED-FIELD; GENETIC VARIATION; GENOME, BACTERIAL; GRAM-POSITIVE BACTERIA; LEUCONOSTOC; LEUCONOSTOCACEAE; PHYSICAL CHROMOSOME MAPPING; SPECIES SPECIFICITY;

LEUCONOSTOC; LEUCONOSTOCACEAE; WEISSELLA;

EID: 76449094650     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.028308-0     Document Type: Article

References (31)

1. Acinas, S. G., Marcelino, L. A., Klepac-Ceraj, V. & Polz, M. F. (2004). Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J Bacteriol 186, 2629-2635.
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
3. Campo, N., Dias, M. J., Daveran-Mingot, M. L., Ritzenthaler, P. & Le Bourgeois, P. (2004). Chromosomal constraints in Gram-positive bacteria revealed by artificial inversions. Mol Microbiol 51, 511-522.
4. T chromosome and characterization of different rrn operons by ITS analysis. Microbiology 150, 4075-4084.
5. Chelo, I. M., Zé-Zé, L. & Tenreiro, R. (2007). Congruence of evolutionary relationships inside the Leuconostoc-Oenococcus-Weissella clade assessed by phylogenetic analysis of the 16S rRNA gene, dnaA, gyrB, rpoC and dnaK. Int J Syst Evol Microbiol 57, 276-286.
6. Collins, M. D., Samelis, J., Metaxopoulos, J. & Wallbanks, S. (1993). Taxonomic studies on some Leuconostoc-like organisms from fermented sausages: description of a new genus Weissella for the Leuconostoc paramesenteroides group of species. J Appl Bacteriol 75, 595-603.
7. De Bruyne, K., Schillinger, U., Caroline, L., Boehringer, B., Cleenwerck, I., Vancanneyt, M., De Vuyst, L., Franz, M. A. P. & Vandamme, P. (2007). Leuconostoc holzapfelii sp. nov., isolated from Ethiopian coffee fermentation and assessment of sequence analysis of housekeeping genes for delineation of Leuconostoc species. Int J Syst Evol Microbiol 57, 2952-2959.
8. de Vries,M. C., Siezen, R. J.,Wijman, J.G. E., Zhao, Y., Kleerebezem,M., de Vos, W. M. & Vaughan, E. E. (2005). Comparative and functional analysis of the rRNA-operons and their tRNA gene complement in different lactic acid bacteria. Syst Appl Microbiol 29, 358-367.
9. Eisen, J. A., Heidelberg, J. F., White, O. & Salzberg, S. L. (2000). Evidence for symmetric chromosomal inversions around the replication origin in bacteria. Genome Biol 1, RESEARCH0011.
10. Endo, A. & Okada, S. (2006). Oenococcus kitaharae sp. nov., a nonacidophilic and non-malolactic-fermenting oenococcus isolated from a composting distilled shochu residue. Int J Syst Evol Microbiol 56, 2345-2348.
11. Endo, A. & Okada, S. (2008). Reclassification of the genus Leuconostoc and proposals of Fructobacillus fructosus gen. nov., comb. nov., Fructobacillus durionis comb. nov., Fructobacillus ficulneus comb. nov. and Fructobacillus pseudoficulneus comb. nov. Int J Syst Evol Microbiol 58, 2195-2205.
12. Garvie, E. I. (1983). Leuconostoc mesenteroides subsp. cremoris (Knudsen and Sorensen) comb. nov. and Leuconostoc mesenteroides subsp. Dextranicum (Beijerinck) comb. nov. Int J Syst Bacteriol 33, 118-119.
13. Holzapfel, W. H. & Schilinger, U. (1991). The Genus Leuconostoc. In The Prokaryotes, vol. 3, pp. 1508-1533. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. Scheifer. Berlin: Springer.
14. Kandler, O. & Weiss, N. (1986). Regular, nonsporing gram-positive rods. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1208-1234. Edited by J. G. Holt, P. H. A. Sneath, N. S. Mair & M. E. Sharpe. Baltimore: Williams & Wilkins.
15. Kim, J. F., Jeong, H., Lee, J., Choi, S., Ha, M., Hur, C., Kim, J., Lee, S., Park, H. & other authors (2008). The complete genome sequence of Leuconostoc citreum KM20. J Bacteriol 190, 3093-3094.
16. Klaenhammer, T., Altermann, E., Arigoni, F., Bolotin, A., Breidt, F., Broadbent, J., Cano, R., Chaillou, S., Deutscher, J. & other authors (2002). Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek 82, 29-58.
17. Klaenhammer, T. R., Barrangou, R., Buck, B. L., Azcarate-Peril, M. A. & Alterman, E. (2005). Genomic features of lactic acid bacteria effecting bioprocessing and health. FEMS Microbiol Rev 29, 393-409.
18. Klappenbach, J. A., Dunbar, J. M. & Schmidt, T. M. (2000). rRNA copy number reflects ecological strategies of bacteria. Appl Environ Microbiol 66, 1328-1333.
19. Lamoureux, M., Prévost, H., Cavin, J. F. & Diviès, C. (1993). Recognition of Leuconostoc oenos strains by the use of DNA restriction profiles. Appl Microbiol Biotechnol 39, 547-552.
20. Le Bourgeois, P., Daveran-Mingot, M. & Ritzenthaler, P. (2000). Genome plasticity among related Lactococcus strains: identification of genetic events associated with macrorestriction polymorphisms. J Bacteriol 182, 2481-2491.
21. Makarova, K. S. & Koonin, E. V. (2007). Evolutionary genomics of lactic acid bacteria. J Bacteriol 189, 1199-1208.
22. Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavlov, A., Pavlova, N., Karamychev, V. & other authors (2006). Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci U S A 103, 15611-15616.
23. Marcobal, A. M., Sela, D. A., Wolf, Y. I., Makarova, K. S. & Mills, D. A. (2007). The role of hypermutability in the evolution of the genus Oenococcus. J Bacteriol 190, 564-570.
24. Martinez-Murcia, A. J. & Collins, M. D. (1990). A phylogenetic analysis of the genus Leuconostoc based on reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol Lett 58, 73-84.
25. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
26. Tenreiro, R., Santos, M. A., Paveia, H. & Vieira, G. (1994). Inter-strain relationships among wine leuconostocs and their divergence from other Leuconostoc species, as revealed by low frequency restriction fragment analysis of genomic DNA. J Appl Bacteriol 77, 271-280.
27. Vandamme, P., Pot, B., Gillis, M., De Vos, P., Kersters, K. & Swings, J. (1996). Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev 60, 407-438.
28. Yang, D. & Woese, C. R. (1989). Phylogenetic structure of the "Leuconostocs": an interesting case of a rapidly evolving organism. Syst Appl Microbiol 12, 145-149.
29. Zé-Zé, L., Tenreiro, R., Brito, L., Santos, M. & Paveia, H. (1998). Physical map of the genome of Oenococcus oeni PSU-1 and localization of genetic markers. Microbiology 144, 1145-1156.
30. Zé-Zé, L., Tenreiro, R. & Paveia, H. (2000). The Oenococcus oeni genome: physical and genetic mapping of strain GM and comparison with the genome of a 'divergent' strain, PSU-1. Microbiology 146, 3195-3204.
31. Zé-Zé, L., Chelo, I. M. & Tenreiro, R. (2008). Genome organization in Oenococus strains studied by comparison of physical and genetic maps. Int Microbiol 11, 237-244.