Phylogenetic relationships of catostomid fishes (Actinopterygii: Cypriniformes) based on mitochondrial ND4/ND5 gene sequences

Molecular Phylogenetics and Evolution

Volumn 54, Issue 3, 2010, Pages 1028-1034

  Doosey, Michael H ^a,b   Bart Jr , Henry L ^a,b   Saitoh, Kenji ^c   Miya, Masaki ^d  

^a Tulane University   (United States)

^b TULANE UNIVERSITY   (United States)

^c FISHERIES RESEARCH AGENCY   (Japan)

^d NATURAL HISTORY MUSEUM AND INSTITUTE   (Japan)

Author keywords

Catostomidae; Maximum likelihood; RY coding; Systematics; tRNA

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CLASSIFICATION; CYPRINIFORMES; DNA SEQUENCE; GENETICS; MITOCHONDRIAL GENE; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT; STATISTICAL MODEL;

ANIMALS; CYPRINIFORMES; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENES, MITOCHONDRIAL; LIKELIHOOD FUNCTIONS; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

ACTINOPTERYGII; CATOSTOMIDAE; CYPRINIFORMES; PISCES;

EID: 76449086683     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.06.006     Document Type: Article

References (29)

1. Bailey, R.M., 1959. A new catostomid fish, Moxostoma (Thoburnia) atripinne, from the Green River drainage, Kentucky and Tennessee. Occasional Papers of the Museum of Zoology, The University of Michigan 599, pp. 1-19.
2. Bart Jr., H.L., Clements, M.D., Blanton, R.E., Piller, K.R., Hurley, D.L., in review. Discordant morphological and molecular evolution in buffalofishes (Actinopterygii: Catostomidae). Evolution.
3. Buth D.G. Genetic relationships among torrent suckers, genus Thoburnia. Biochemical Systematics and Ecology 7 (1979) 311-316
4. Ferris S.M., and Whitt G.S. Phylogeny of tetraploid catostomid fishes based on the loss of duplicate gene expression. Systematic Zoology 27 (1978) 189-206
5. Fuiman L.A. Contributions of developmental characters to a phylogeny of catostomid fishes, with comments on heterochrony. Copeia 1985 (1985) 833-846
6. Harris P.M., and Mayden R.L. Phylogenetic relationships of major clades of Catostomidae (Teleostei: Cypriniformes) as inferred from mitochondrial SSU and LSU rDNA sequences. Molecular Phylogenetics and Evolution 20 (2001) 225-237
7. Harris P.M., Mayden R.L., Perez H.S.E., and Garcia de Leon F. Phylogenetic relationships of Moxostoma and Scartomyzon (Catostomidae) based on mitochondrial cytochrome b sequence data. Journal of Fish Biology 61 (2002) 1433-1452
8. Hubbs, C.L., 1930. Materials for a revision of the catostomid fishes of eastern North America. Miscellaneous Publications. Museum of Zoology, University of Michigan 20, pp. 5-47.
9. Jenkins R.E. Systematic Studies of the Catostomid Fish Tribe Moxostomatini (1970), Cornell University, Ithaca, NY p. 799
10. Kumazawa Y., and Nishida M. Sequence evolutions of mitochondrial tRNA genes and deep-branch animal phylogenetics. Journal of Molecular Evolution 37 (1993) 380-398
11. Mabuchi K., Miya M., Senou H., Suzuki T., and Nishida M. Complete mitochondrial DNA sequence of the Lake Biwa wild strain of common carp (Cyprinus carpio L.): further evidence for an ancient origin. Aquaculture 257 (2006) 68-77
12. Mayden R.L., Chen W.-J., Bart Jr. H.L., Doosey M.H., Simons A.M., Tang K.L., Wood R.M., Agnew M.K., Yang L., Hirt M.V., Clements M.D., Saitoh K., Sado T., Miya M., and Nishida M. Reconstructing the phylogenetic relationships of the Earth's most diverse clade of freshwater fishes - order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome. Molecular Phylogenetics and Evolution 51 (2009) 500-514
13. Miller, R.R., Smith, G.R., 1981. Distribution and evolution of Chasmistes (Pisces: Catostomidae) in western North America. Occasional Papers of the Museum of Zoology, The University of Michigan 696, pp. 1-46.
14. Miya M., Saitoh K., Wood R., Nishida M., and Mayden R.L. New primers for amplifying and sequencing the mitochondrial ND4/ND5 gene region of the Cypriniformes (Actinopterygii: Ostariophysi). Ichthyological Research 53 (2006) 75-81
15. Murakami M., Yamashita Y., and Fujitani H. The complete sequence of mitochondrial genome from a gynogenetic triploid "ginbuna" (Carassius auratus langsdorfi). Zoological Science 15 (1998) 335-337
16. Nelson J.S. Fishes of the World (2006), John Wiley and Sons, New York
17. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
18. Robins C.R., and Raney E.C. Studies of the catostomid fishes of the genus Moxostoma, with descriptions of two new species. Cornell Agricultural Experiment Station Memoir 343 (1956) 3-56
19. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
20. Saitoh K., Miya M., Inoue J.G., Ishiguro N.B., and Nishida M. Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography. Journal of Molecular Evolution 56 (2003) 464-472
21. Saitoh K., Sado T., Mayden R.L., Hanzawa N., Nakamura K., Nishida M., and Miya M. Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences. Journal of Molecular Evolution 63 (2006) 826-841
22. Simmons M.P., Pickett K.M., and Miya M. How meaningful are Bayesian support values?. Molecular Biology and Evolution 21 (2004) 188-199
23. Smith, G.R., 1966. Distribution and evolution of the North American catostomid fishes of the subgenus Pantosteus, genus Catostomus. Miscellaneous Publications. Museum of Zoology, University of Michigan 129, pp. 1-132.
24. Smith G.R. Phylogeny and biogeography of the Catostomidae, freshwater fishes of North America and Asia. In: Mayden R.L. (Ed). Systematics, Historical Ecology, and North American Freshwater Fishes (1992), Stanford University Press, Stanford, CA 778-826
25. Smith G.R., and Koehn R.K. Phenetic and cladistic studies of biochemical and morphological characters of Catostomus. Systematic Zoology 20 (1971) 282-297
26. Stamatakis A., Hoover P., and Rougemont J. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57 (2008) 758-771
27. Sun Y.H., Xie C.X., Wang W.M., Liu S.Y., Treer T., and Chang M.M. The genetic variation and biogeography of catostomid fishes based on mitochondrial and nucleic DNA sequences. Journal of Fish Biology 70 Suppl. C (2007) 291-309
28. Swofford D.L. PAUP* Phylogenetic Analysis Using Parsimony (*and Other Methods). fourth ed. (2002), Sinauer Associates, Sunderland, MA
29. Uyeno T., and Smith G.R. Tetraploid origin of the karyotype of catostomid fishes. Science 175 (1972) 644-646