Comparative cytogenetic analysis of Avena macrostachya and diploid C-genome Avena species

Genome

Volumn 53, Issue 2, 2010, Pages 125-137

  Badaeva, Ekaterina D ^a   Shelukhina, Olga Yu ^b   Diederichsen, Axel ^c   Loskutov, Igor G ^d   Pukhalskiy, Vitaly A ^b  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^b VAVILOV INSTITUTE OF GENERAL GENETICS   (Russian Federation)

^c AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^d Russian Academy of Agricultural Sciences   (Russian Federation)

Author keywords

A. macrostachya; Avena; C genome; C banding; Chromosome evolution; FISH; Karyotypes; rDNA

Indexed keywords

PLANT DNA; RIBOSOME DNA;

ARTICLE; CHROMOSOME BANDING PATTERN; COMPARATIVE STUDY; DIPLOIDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; KARYOTYPING; MOLECULAR EVOLUTION; OAT; PLANT CHROMOSOME; PLANT GENOME; SPECIES DIFFERENCE;

AVENA SATIVA; CHROMOSOME BANDING; CHROMOSOMES, PLANT; DIPLOIDY; DNA, PLANT; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; GENOME, PLANT; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; SPECIES SPECIFICITY;

AVENA; AVENA MACROSTACHYA;

EID: 76349125809     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G09-089     Document Type: Article

References (52)

1. Altosaar, I., and Fabijanski, S.F. 1986. Molecular biology of oat storage protein genes: probes for evaluating germplasm. In Proceedings of the 2nd International Oat Conference, The University College of Wales, Welsh Plant Breeding Station, Aberystwyth, 15-18 July 1985. Edited by D.A. Lawes and H. Thomas. Martinus Nijhoff, Dordrecht. pp. 39-45.
2. Ananiev, E.V., Vales, M.I., Phillips, R.L., and Rines, H.W. 2002. Isolation of A/D and C genome specific dispersed and clustered repetitive DNA sequences from Avena sativa. Genome, 45(2): 431-441. doi:10.1139/g01-148. PMID:11962640.
3. Badaeva, E.D., Badaev, N.S., Gill, B.S., and Filatenko, A.A. 1994. Intraspecific karyotype divergence in Triticum araraticum (Poaceae). Plant Syst. Evol. 192(1-2): 117-145. doi:10.1007/BF00985912.
4. Badaeva, E.D., Loskutov, I.G., Shelukhina, O.Y., and Pukhalsky, V.A. 2005. Cytogenetic analysis of diploid Avena L. species containing the As genome. Russ. J. Genet. 41(12): 1428-1433. doi:10.1007/s11177-006-0018-3.
5. Baum, B.R. 1977. Oats: wild and cultivated. A monograph of the genus Avena L. (Poaceae). Can. Dep. Agric. Res. Branch Monogr. 14. Thorn Press, Ltd., Ottawa, Ont.
6. Baum, B.R., and Rajhathy, T. 1976. A study of Avena macrostachya. Can. J. Bot. 54(21): 2434-2439. doi:10.1139/b76-258.
7. Cheng, D.W., Armstrong, K.C., Drouin, G., McElroy, A., Fedak, G., and Molnar, S.D. 2003. Isolation and identification of Triticeae chromosome 1 receptor-like kinase genes (Lrk10) from diploid, tetraploid, and hexaploid species of the genus Avena. Genome, 46(1): 119-127. doi:10.1139/g02-111. PMID: 12669804.
8. Fabijanski, S., Fedak, G., Armstrong, K., and Altosaar, I. 1990. A repeated sequence probe for the C genome in Avena (oats). Theor. Appl. Genet. 79(1): 1-7. doi:10.1007/BF00223778.
9. Fominaya, A., Vega, C., and Ferrer, E. 1988. Giemsa C-banded karyotypes of Avena species. Genome, 30(5): 627-632. doi:10. 1139/g88-106.
10. Fominaya, A., Hueros, G., Loarce, Y., and Ferrer, E. 1995. Chromosomal distribution of a repeated DNA sequence from C-genome heterochromatin and the identification of a new ribosomal DNA locus in the Avena genus. Genome, 38(3): 548-557. doi:10.1139/g95-071. PMID:7557363.
11. Gerlach, W.L., and Bedbrook, J.R. 1979. Cloning and characterization of ribosomal RNA genes from wheat and barley. Nucleic Acids Res. 7(7): 1869-1885. doi:10.1093/nar/7.7.1869. PMID: 537913.
12. Gerlach, W.L., and Dyer, T.A. 1980. Sequence organization of the repeating units in the nucleus of wheat which contain 5S rRNA genes. Nucleic Acids Res. 8(21): 4851-4865. doi:10.1093/nar/8. 21.4851. PMID:7443527.
13. Guarino, L., Chadja, H., and Mokkadem, A. 1991. Collection of Avena macrostachya Bal. ex Coss. et Dur. (Poaceae) germplasm in Algeria. Econ. Bot. 45: 460-466.
14. Hayasaki, M., Morikawa, T., and Tarumoto, I. 2000. Intergenomic translocations of polyploid oats (genus Avena) revealed by genomic in situ hybridization. Genes Genet. Syst. 75(3): 167-171. doi:10.1266/ggs.75.167. PMID:10984842.
15. Hoppe, H.-D., and Pohler, W. 1988. Successful hybridization between Avena prostrata and Avena macrostachya. Cereal Res. Commun. 16: 231-235.
16. Hoppe, H.-D., Pohler, W., and Kison, H.-U. 1990. Tri-, tetraund pentaploide Bastarde aus interspezifischen Kreuzungen mit Avena macrostachya. Biol. Zentralbl. 109: 499-504.
17. Irigoyen, M.L., Linares, C., Ferrer, E., and Fominaya, A. 2002. Fluorescence in situ hybridization mapping of Avena sativa L. cv. SunII and its monosomic lines using cloned repetitive DNA sequences. Genome, 45(6): 1230-1237. doi:10.1139/g02-076. PMID:12502269.
18. Jellen, E.N., and Gill, B.S. 1996. C-banding variation in the Moroccan oat species Avena agadiriana (2n = 4x = 28). Theor. Appl. Genet. 92(6): 726-732. doi:10.1007/BF00226095.
19. Jellen, E.N., and Ladizinsky, G. 2000. Giemsa C-banding in Avena insularis Ladizinsky. Genet. Resour. Crop Evol. 47(3): 227-230. doi:10.1023/A:1008769105071.
20. Jellen, E.N., and Leggett, J.M. 2006. Cytogenetic manipulation in oat improvement. In Genetic resources, chromosome engineering, and crop improvement. Vol. 2. Cereals. Edited by R.J. Singh and P.P. Jauhar. CRC Press. pp. 199-232.
21. Jellen, E.N., Phillips, R.L., and Rines, H.W. 1993. C-banded karyotypes and polymorphisms in hexaploid oat accessions (Avena spp.) using Wright's stain. Genome, 36(6): 1129-1137. doi:10. 1139/g93-151. PMID:18470055.
22. Jellen, E.N., Phillips, R.L., and Rines, H.W. 1994. Chromosomal localization and polymorphisms of ribosomal DNA in oat (Avena spp.). Genome, 37(1): 23-32. doi:10.1139/g94-004. PMID:18470058.
23. Katsiotis, A., Loukas, M., and Heslop-Harrison, J.S. 2000. Repetitive DNA, genome and species relationships in Avena and Arrhenatherum (Poaceae). Ann. Bot. (Lond.), 86(6): 1135-1142. doi:10.1006/anbo.2000.1284.
24. Leggett, J.M. 1985. Intraspecific hybrids involving the perennial oat species Avena macrostachya. Can. J. Genet. Cytol. 27(1): 29-32. doi:10.1139/g85-006.
25. Leggett, J.M. 1987. Winter hardiness genes from the wild oat species Avena macrostachya. In Welsh Plant Breeding Station Report for 1986. Welsh Plant Breeding Station, Aberystwyth.
26. Leggett, J.M. 1992. Further hybrids involving the perennial autotetraploid oat Avena macrostachya. Genome, 35(2): 273-275. doi:10.1139/g92-042.
27. Leggett, J.M., and Markhand, G.S. 1995. The genomic configuration of Avena revealed by GISH. In Kew Chromosome Conference IV. Edited by P.E. Brandham and M.D. Bennett. Royal Botanic Gardens, Kew. pp. 133-139.
28. Linares, C., González, J., Ferrer, E., and Fominaya, A. 1996. The use of double fluorescence in situ hybridization to physically map the positions of 5S rDNA genes in relation to the chromosomal location of 18S-5.8S-26S rDNA and a C genome specific DNA sequence in the genus Avena. Genome, 39(3): 535-542. doi:10.1139/g96-068. PMID:18469914.
29. Linares, C., Irigoyen, M.L., and Fominaya, A. 2000. Identification of C-genome chromosomes involved in intergenomic translocations in Avena sativa L., using cloned repetitive DNA sequences. Theor. Appl. Genet. 100(3-4): 353-360. doi:10.1007/ s001220050046.
30. Loskutov, I.G. 2001. Intraspecific crosses in the genus Avena L. Russ. J. Genet. 37(5): 467-475. doi:10.1023/A:1016697812009.
31. Nikoloudakis, N., and Katsiotis, A. 2008. The origin of the C-genome and cytoplasm of Avena polyploids. Theor. Appl. Genet. 117(2): 273-281. doi:10.1007/s00122-008-0772-9. PMID:18463841.
32. Nikoloudakis, N., Skaracis, G., and Katsiotis, A. 2008. Evolutionary insights inferred by molecular analysis of the ITS1-5.8S-ITS2 and IGS Avena sp. sequences. Mol. Phylogenet. Evol. 46(1): 102-115. doi:10.1016/j.ympev.2007.10.007. PMID:18039583.
33. Peng, Y.-Y., Wei, Y.-M., Baum, B.R., and Zheng, Y.-L. 2008. Molecular diversity of the 5S rRNA gene and genomic relationships in the genus Avena (Poaceae: Aveneae). Genome, 51(2): 137-154. doi:10.1139/G07-111. PMID:18356948.
34. Pohler, W., and Hoppe, H.-D. 1991. Homeology between the chromosomes of Avena macrostachya and the Avena C genome. Plant Breed. 106(3): 250-253. doi:10.1111/j.1439-0523.1991.tb00508.x.
35. Postoyko, J., and Hutchinson, J. 1986. The identification of Avena chromosomes by means of C-banding. In Proceedings of the 2nd International Oat Conference, The University College of Wales, Welsh Plant Breeding Station, Aberystwyth, 15-18 July 1985. Edited by D.A. Lawes and H. Thomas. Martinus Nijhoff, Dordrecht. pp. 50-51.
36. Rajhathy, T. 1971. Chromosome polymorphism in Avena ventricosa. Chromosoma, 35(2): 206-216. doi:10.1007/BF00285737.
37. Rodionov, A.V., Tyupa, N.B., Kim, E.S., Machs, E.M., and Loskutov, I.G. 2005. Genomic configuration of the autotetraploid oat species Avena macrostachya inferred from comparative analysis of ITS1 and ITS2 sequences: on the oat karyotype evolution during the early events of the Avena species divergence. Russ. J. Genet. 41(5): 518-528. doi:10.1007/s11177-005-0120-y.
38. Santos, A., Livingston, D.P., and Murphy, J.P. 2002. Agronomic, cytological and RAPD evaluations of Avena sativa A. macrostachya populations. In Eastern Wheat Workers and Southern Small Grain Workers Proceedings. Available from http://www.ars.usda.gov/research/publications/Publications.htm?seq_no_115=136677&pf=1.
39. Shelukhina, O., Badaeva, E., Loskutov, I., and Pukhal'sky, V. 2007. A comparative cytogenetic study of the tetraploid oat species with the A and C genomes: Avena insularis, A. magna, and A. murphyi. Russ. J. Genet. 43(6): 613-626. doi:10.1134/S102279540706004X.
40. Shelukhina, O., Badaeva, E., Brezhneva, T., Loskutov, I., and Pukhalsky, V. 2008a. Comparative analysis of diploid species of Avena L. using cytogenetic and biochemical markers: Avena canariensis Baum et Fedak and A. longiglumis Dur. Russ. J. Genet. 44(6): 694-701. doi:10.1134/S1022795408060094.
41. Shelukhina, O., Badaeva, E., Brezhneva, T., Loskutov, I., and Pukhalsky, V. 2008b. Comparative analysis of diploid species of Avena L. using cytogenetic and biochemical markers: Avena pilosa M. B. and A. clauda Dur. Russ. J. Genet. 44(9): 1087-1091. doi:10.1134/S1022795408090111.
42. Thomas, H. 1970. Chromosome relationships between the cultivated oat Avena sativa (6x) and A. ventricosa (2x). Can. J. Genet. Cytol. 12(1): 36-43. doi:10.1139/g70-007.
43. Thomas, H., and Jones, M.L. 1965. Chromosomal differentiation in diploid species of Avena. Can. J. Genet. Cytol. 7(1): 108-111. doi:10.1139/g65-016.
44. Volkov, R.A., Borisjuk, N.V., Panchuk, I.I., Schweizer, D., and Hemleben, V. 1999. Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum. Mol. Biol. Evol. 16(3): 311-320. PMID:10331258.
45. Volkov, R.A., Komarova, N.Y., and Hemleben, V. 2007. Ribosomal DNA in plant hybrids: inheritance, rearrangement, expression. Syst. Biodivers. 5(3): 261-276. doi:10.1017/S1477200007002447.
46. Weibull, J. 1988. Resistance in the wild crop relatives Avena macrostachya and Hordeum bogdani to the aphid Rhopalosiphum padi. Entomol. Exp. Appl. 48(3): 225-232. doi:10.1007/ BF00376401.
47. Wendel, J.F. 2000. Genome evolution in polyploids. Plant Mol. Biol. 42(1): 225-249. doi:10.1023/A:1006392424384. PMID: 10688139.
48. Winterfeld, G., and Roser, M. 2007. Disposition of ribosomal DNAs in the chromosomes of perennial oats (Poaceae: Aveneae). Bot. J. Linn. Soc. 155(2): 193-210. doi:10.1111/j.1095-8339.2007.00690.x.
49. Winterfeld, G., Doring, E., and Roser, M. 2009. Chromosome evolution in wild oat grasses (Aveneae) revealed by molecular phylogeny. Genome, 52(4): 361-380. doi:10.1139/G09-012. PMID: 19370092.
50. Yang, Q., Hanson, L., Bennett, M.D., and Leitch, I.J. 1999. Genome structure and evolution in the allohexaploid weed Avena fatua L. (Poaceae). Genome, 42(3): 512-518. doi:10.1139/gen-42-3-512. PMID:10382298.
51. Yu, J., and Herrmann, M. 2006. Inheritance and mapping of a powdery mildew resistance gene introgressed from Avena macrostachya in cultivated oat. Theor. Appl. Genet. 113(3): 429-437. doi:10.1007/s00122-006-0308-0. PMID:16802169.
52. Zoshchuk, S.A., Badaeva, E.D., Zoshchuk, N.V., Adonina, I.G., Shcherban', A.B., and Salina, E.A. 2007. Intraspecific divergence in wheats of the Timopheevi group as revealed by in situ hybridization with tandem repeats of the Spelt1 and Spelt52 families. Russ. J. Genet. 43(6): 636-645. doi:10.1134/S1022795407060063.