Comparative study of the discriminating capacity and effectiveness of AFLP, STMS and EST markers in assessing genetic relationships among evergreen azaleas

Plant Breeding

Volumn 126, Issue 2, 2007, Pages 207-212

  Scariot, V ^a   De Keyser, E ^b   Handa, T ^c   De Riek, J ^b  

^a UNIVERSITY OF TURIN   (Italy)

^b INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

^c UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

Ericaceae; Expressed sequence tags; Marker comparisons; Microsatellites; Phylogeny; Rhododendron spp.; Sequence tagged sites; Tsutsusi

Indexed keywords

ERICACEAE; RHODODENDRON;

EID: 33947381737     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2007.01326.x     Document Type: Article

References (17)

1. Belaj, A., Z. Satovic, G. Cipriani, L. Baldoni, R. Testolin, L. Rallo, and I. Trujillo, 2003: Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their effectiveness in establishing genetic relationships in olive. Theor. Appl. Genet. 107, 736-44.
2. Chamberlain, D. F., and S. J. Rae, 1990: A revision of Rhododendron IV Subgenus Tsutsusi. Edin. J. Bot. 47, 89-00.
3. De Keyser, E., V. Scariot, T. Handa, and J. De Riek (2006) EST markers in evergreen azalea: development and use for classifications compared to AFLP, microsatellite and morphological data. In: Proceedings of the 27th International Horticultural Congress. Acta Hort. (in press).
4. De Riek, J., J. Dendauw, M. Mertens, M. De Loose, J. Heursel, and E. Van Bockstaele, 1999: Validation of criteria for the selection of AFLP markers to assess the genetic variation of a breeders' collection of evergreen azaleas. Theor. Appl. Genet. 99, 1155-165.
5. Dendauw, J., J. De Riek, P. Arens, E. Van Bockstaele, B. Vosman, and M. De Loose, 2001: Development of sequenced tagged microsatellite site (STMS) markers in azalea. Acta Hort. 546, 193-97.
6. Dendauw, J., J. De Riek, M. De Loose, and E. Van Bockstaele, 2002: Identification of 33 Chinese Rhododendron species using matK sequences and AFLP data. Acta Hort. 572, 169-7.
7. Felsenstein, J., 1993: PHYLIP, phylogenetic inference package, version 3.5.7. A computer program distributed by the author, http://evolution.genetics. washington.edu/phylip.html. Department of Genetics, University of Washington, Seattle, WA.
8. Jaccard, P., 1908: Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44, 223-70.
9. Kobayashi, N., S. Kawashima, T. Handa, K. Takayanagi, and K. Arisumi, 1998: Introgression in Japanese evergreen azaleas (Rhododendron kiusianum and R. kaempferi). Acta Hort. 454, 325-28.
10. Kurashige, Y., M. Milne, N. Kobayashi, T. Handa, K. Takayanagi, and T. Yukawa, 1998: Investigation of sectional relationships in the genus Rhododendron (Ericaceae) based on matK sequences. J. Jpn. Bot. 73, 143-54.
11. Kurashige, Y., J. I. Etoh, T. Handa, K. Takayanagi, and T. Yukawa, 2001: Sectional relationships in the genus Rhododendron (Ericaceae): evidence from matK and trnK sequences. Plant. Syst. Evol. 228, 1-4.
12. Lem, P., and J. Lallemand, 2003: Grass consensus STS markers: an efficient approach for detecting polymorphism in Lolium. Theor. Appl. Genet. 107, 1113-122.
13. Mantel, N., 1967: The detection of disease clustering and a generalized regression approach. Cancer Res. 27, 209-20.
14. Pejic, I., P. Ajmone-Marsan, M. Morgante, V. Kozumplick, P. Castiglioni, G. Taramino, and M. Motto, 1998: Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs and AFLPs. Theor. Appl. Genet. 97, 1248-255.
15. Smouse, P. E., J. C. Long, and R. R. Sokal, 1986: Multiple regression and correlation extensions of the Mantel test of Matrix correspondence. Syst. Zool. 35, 627-32.
16. Woodhead, M., J. Russell, J. Squirrel, M. Hollingsworth, K. Mackenzie, M. Gibby, and W. Powell, 2005: Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Mol. Ecol. 14, 1681-695.
17. Yamazaki, T., 1996: A Revision of the Genus Rhododendron in Japan, Taiwan, Korea and Sakhalin. 1-25. Tsumura Laboratory, Tokyo.