-
1
-
-
0017657414
-
DNA arrangement in isometric phage heads
-
Earnshaw WC, Harrison SC (1977) DNA arrangement in isometric phage heads. Nature 268:598-602.
-
(1977)
Nature
, vol.268
, pp. 598-602
-
-
Earnshaw, W.C.1
Harrison, S.C.2
-
2
-
-
0035909370
-
The bacteriophage straight phi29 portal motor can package DNA against a large internal force
-
Smith DE, et al. (2001) The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature 413:748-752.
-
(2001)
Nature
, vol.413
, pp. 748-752
-
-
Smith, D.E.1
-
3
-
-
84954358715
-
Bacteriophage T5 DNA ejection under pressure
-
Leforestier A, et al. (2008) Bacteriophage T5 DNA ejection under pressure. J Mol Biol 384:730-739.
-
(2008)
J Mol Biol
, vol.384
, pp. 730-739
-
-
Leforestier, A.1
-
4
-
-
63449094990
-
Virology. Pressurized viruses
-
Gelbart WM, Knobler CM (2009) Virology. Pressurized viruses. Science 323:1682-1683.
-
(2009)
Science
, vol.323
, pp. 1682-1683
-
-
Gelbart, W.M.1
Knobler, C.M.2
-
5
-
-
0042925427
-
Osmotic pressure inhibition of DNA ejection from phage
-
Evilevitch A, Lavelle L, Knobler CM, Raspaud E, Gelbart WM (2003) Osmotic pressure inhibition of DNA ejection from phage. Proc Natl Acad Sci USA 100:9292-9295.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9292-9295
-
-
Evilevitch, A.1
Lavelle, L.2
Knobler, C.M.3
Raspaud, E.4
Gelbart, W.M.5
-
6
-
-
38149099289
-
DNA ejection from bacteriophage: Towards a general behavior for osmotic-suppression experiments
-
Castelnovo M, Evilevitch A (2007) DNA ejection from bacteriophage: Towards a general behavior for osmotic-suppression experiments. Eur Phys J E Soft Matter 24:9-18.
-
(2007)
Eur Phys J E Soft Matter
, vol.24
, pp. 9-18
-
-
Castelnovo, M.1
Evilevitch, A.2
-
7
-
-
33947325925
-
Forces controlling the rate of DNA ejection from phage lambda
-
Löf D, Schillén K, Jönsson B, Evilevitch A (2007) Forces controlling the rate of DNA ejection from phage lambda. J Mol Biol 368:55-65.
-
(2007)
J Mol Biol
, vol.368
, pp. 55-65
-
-
Löf, D.1
Schillén, K.2
Jönsson, B.3
Evilevitch, A.4
-
8
-
-
0000725843
-
The cholesteric phase in polypeptide solutions and biological structures
-
Robinson C (1966) The cholesteric phase in polypeptide solutions and biological structures. Mol Cryst 1:467-494.
-
(1966)
Mol Cryst
, vol.1
, pp. 467-494
-
-
Robinson, C.1
-
9
-
-
0021618422
-
The organization of cholesteric spherulites
-
Bouligand Y, Livolant F (1984) The organization of cholesteric spherulites. J Physique 45:1899-1923.
-
(1984)
J Physique
, vol.45
, pp. 1899-1923
-
-
Bouligand, Y.1
Livolant, F.2
-
10
-
-
25844439434
-
DNA cholesteric pitch as a function of density and ionic strength
-
Stanley CB, Hong H, Strey HH (2005) DNA cholesteric pitch as a function of density and ionic strength. Biophys J 89:2552-2557.
-
(2005)
Biophys J
, vol.89
, pp. 2552-2557
-
-
Stanley, C.B.1
Hong, H.2
Strey, H.H.3
-
11
-
-
0036461952
-
Chiral electrostatic interaction and cholesteric liquid crystals of DNA
-
Kornyshev A A Leikin S, Malinin SV (2002) Chiral electrostatic interaction and cholesteric liquid crystals of DNA. Eur Phys J E 7:83-93.
-
(2002)
Eur Phys J E
, vol.7
, pp. 83-93
-
-
Kornyshev, A.A.1
Leikin, S.2
Malinin, S.V.3
-
12
-
-
31844435708
-
Structure of epsilon 15 bacteriophage reveals genome organization and DNA packaging/injection apparatus
-
Jiang W, et al. (2006) Structure of epsilon 15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature 439:612-616.
-
(2006)
Nature
, vol.439
, pp. 612-616
-
-
Jiang, W.1
-
13
-
-
38649114349
-
Three-dimensional architecture of the bacteriophage phi29 packaged genome and elucidation of its packaging process
-
Comolli LR et al. (2008) Three-dimensional architecture of the bacteriophage phi29 packaged genome and elucidation of its packaging process. Virology 371:267-277.
-
(2008)
Virology
, vol.371
, pp. 267-277
-
-
Comolli, L.R.1
-
14
-
-
0015829833
-
On the sequence similarity of the cohesive ends of coliphage P4, P2, and 186 deoxyribonucleic acid
-
Wang JC, Martin KV, Calendar R (1973) On the sequence similarity of the cohesive ends of coliphage P4, P2, and 186 deoxyribonucleic acid. Biochemistry 12:2119-2123.
-
(1973)
Biochemistry
, vol.12
, pp. 2119-2123
-
-
Wang, J.C.1
Martin, K.V.2
Calendar, R.3
-
16
-
-
0019517763
-
Novel topologically knotted DNA from bacteriophage P4 capsids: Studies with DNA topoisomerases
-
Liu LF, Davis JL, Calendar R (1981) Novel topologically knotted DNA from bacteriophage P4 capsids: studies with DNA topoisomerases. Nucleic Acids Res 9:3979-3989.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 3979-3989
-
-
Liu, L.F.1
Davis, J.L.2
Calendar, R.3
-
17
-
-
0027200062
-
Knotting of a DNA chain during ring closure
-
Shaw SY, Wang JC (1993) Knotting of a DNA chain during ring closure. Science 260:533-536.
-
(1993)
Science
, vol.260
, pp. 533-536
-
-
Shaw, S.Y.1
Wang, J.C.2
-
18
-
-
16144365192
-
Electrophoretic mobility of DNA knots
-
Stasiak A, Katritch V, Bednar J, Michoud D, Dubochet J (1996) Electrophoretic mobility of DNA knots. Nature 384:122-122.
-
(1996)
Nature
, vol.384
, pp. 122-122
-
-
Stasiak, A.1
Katritch, V.2
Bednar, J.3
Michoud, D.4
Dubochet, J.5
-
19
-
-
0037117517
-
Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids
-
Arsuaga J, Vázquez M, Trigueros S, Sumners D, Roca J (2002) Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids. Proc Natl Acad Sci USA 99:5373-5377.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 5373-5377
-
-
Arsuaga, J.1
Vázquez, M.2
Trigueros, S.3
Sumners, D.4
Roca, J.5
-
20
-
-
21544474118
-
DNA knots reveal a chiral organization of DNA in phage capsids
-
Arsuaga J et al. (2005) DNA knots reveal a chiral organization of DNA in phage capsids. Proc Natl Acad Sci USA 102:9165-9169.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9165-9169
-
-
Arsuaga, J.1
-
21
-
-
0021972652
-
Discovery of a predicted DNA knot substantiates a model for site-specific recombination
-
Wasserman SA, Dungan JM, Cozzarelli NR (1985) Discovery of a predicted DNA knot substantiates a model for site-specific recombination. Science 229:171-174.
-
(1985)
Science
, vol.229
, pp. 171-174
-
-
Wasserman, S.A.1
Dungan, J.M.2
Cozzarelli, N.R.3
-
22
-
-
0022111794
-
The stereostructure of knots and catenanes produced by phage lambda integrative recombination: Implications for mechanism and DNA structure
-
Spengler SJ, Stasiak A, Cozzarelli NR (1985) The stereostructure of knots and catenanes produced by phage lambda integrative recombination: Implications for mechanism and DNA structure. Cell 42:325-334.
-
(1985)
Cell
, vol.42
, pp. 325-334
-
-
Spengler, S.J.1
Stasiak, A.2
Cozzarelli, N.R.3
-
23
-
-
84972274704
-
A calculus for rational tangles: Applications to DNA recombination
-
Ernst C, Sumners DW (1990) A calculus for rational tangles: Applications to DNA recombination. Math Proc Camb Phil Soc 108:489-515.
-
(1990)
Math Proc Camb Phil Soc
, vol.108
, pp. 489-515
-
-
Ernst, C.1
Sumners, D.W.2
-
24
-
-
0035902590
-
Topological challenges to DNA replication: Conformations at the fork
-
Postow L, Crisona NJ, Peter BJ, Hardy CD, Cozzarelli NR (2001) Topological challenges to DNA replication: conformations at the fork. Proc Natl Acad Sci USA 98:8219-8226.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 8219-8226
-
-
Postow, L.1
Crisona, N.J.2
Peter, B.J.3
Hardy, C.D.4
Cozzarelli, N.R.5
-
25
-
-
0037058959
-
Investigation of viral DNA packaging using molecular mechanics models
-
Arsuaga J, Tan RKZ, Vazquez M, Sumners DW, Harvey SC (2002) Investigation of viral DNA packaging using molecular mechanics models. Biophys Chem 101-102:475-484.
-
(2002)
Biophys Chem
, vol.101-102
, pp. 475-484
-
-
Arsuaga, J.1
Tan, R.K.Z.2
Vazquez, M.3
Sumners, D.W.4
Harvey, S.C.5
-
26
-
-
33745759318
-
Langevin dynamics simulations of genome packing in bacteriophage
-
Forrey C, Muthukumar M (2006) Langevin dynamics simulations of genome packing in bacteriophage. Biophys J 91:25-41.
-
(2006)
Biophys J
, vol.91
, pp. 25-41
-
-
Forrey, C.1
Muthukumar, M.2
-
29
-
-
0015040327
-
The writhing number of a space curve
-
Fuller FB (1971) The writhing number of a space curve. Proc Natl Acad Sci USA 68:815-819.
-
(1971)
Proc Natl Acad Sci USA
, vol.68
, pp. 815-819
-
-
Fuller, F.B.1
-
30
-
-
0033539595
-
Equilibrium distributions of topological states in circular DNA: Interplay of supercoiling and knotting
-
Podtelezhnikov AA, Cozzarelli NR, Vologodskii AV (1999) Equilibrium distributions of topological states in circular DNA: Interplay of supercoiling and knotting. Proc Natl Acad Sci USA 96:12974-12979.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 12974-12979
-
-
Podtelezhnikov, A.A.1
Cozzarelli, N.R.2
Vologodskii, A.V.3
-
31
-
-
0034636020
-
A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links
-
Cerf C, Stasiak A (2000) A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links. Proc Natl Acad Sci USA 97:3795-3798.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 3795-3798
-
-
Cerf, C.1
Stasiak, A.2
-
34
-
-
0038385492
-
Thermodynamics of DNA packaging inside a viral capsid: The role of DNA intrinsic thickness
-
Marenduzzo D, Micheletti C (2003) Thermodynamics of DNA packaging inside a viral capsid: The role of DNA intrinsic thickness. J Mol Biol 330:485-492.
-
(2003)
J Mol Biol
, vol.330
, pp. 485-492
-
-
Marenduzzo, D.1
Micheletti, C.2
-
35
-
-
47749092360
-
Packaging double-helical DNA into viral capsids: Structures, forces, and energetics
-
Petrov AS, Harvey SC (2008) Packaging double-helical DNA into viral capsids: Structures, forces, and energetics. Biophys J 95:497-502.
-
(2008)
Biophys J
, vol.95
, pp. 497-502
-
-
Petrov, A.S.1
Harvey, S.C.2
-
36
-
-
67249125585
-
Structure of toroidal DNA collapsed inside the phage capsid
-
Leforestier A, Livolant F (2009) Structure of toroidal DNA collapsed inside the phage capsid. Proc Natl Acad Sci USA 106:9157-9162.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9157-9162
-
-
Leforestier, A.1
Livolant, F.2
-
40
-
-
0027279063
-
Probability of DNA knotting and the effective diameter of the DNA double helix
-
Rybenkov VV, Cozzarelli NR, Vologodskii AV (1993) Probability of DNA knotting and the effective diameter of the DNA double helix. Proc Natl Acad Sci USA 90: 5307-5311.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 5307-5311
-
-
Rybenkov, V.V.1
Cozzarelli, N.R.2
Vologodskii, A.V.3
-
41
-
-
0030395810
-
Condensed phases of DNA: Structures and phase transitions
-
Livolant F, Leforestier F (1996) Condensed phases of DNA: structures and phase transitions. Prog Polym Sci 21:1115-1164.
-
(1996)
Prog Polym Sci
, vol.21
, pp. 1115-1164
-
-
Livolant, F.1
Leforestier, F.2
-
42
-
-
54549099051
-
DNA cholesteric phases: The role of DNA molecular chirality and DNA-DNA electrostatic interactions
-
Cherstvy AG (2008) DNA cholesteric phases: The role of DNA molecular chirality and DNA-DNA electrostatic interactions. J Phys Chem B 112:12585-12595.
-
(2008)
J Phys Chem B
, vol.112
, pp. 12585-12595
-
-
Cherstvy, A.G.1
-
43
-
-
0026579790
-
Image reconstruction from cryo-electron micrographs reveals the morphopoietic mechanism in the P2-P4 bacteriophage system
-
Dokland T, Lindqvist BH, Fuller SD (1992) Image reconstruction from cryo-electron micrographs reveals the morphopoietic mechanism in the P2-P4 bacteriophage system. EMBO J 11:839-846.
-
(1992)
EMBO J
, vol.11
, pp. 839-846
-
-
Dokland, T.1
Lindqvist, B.H.2
Fuller, S.D.3
-
44
-
-
79051471417
-
Dynamics of fibers growing inside soft vesicles
-
Marenduzzo D, Orlandini E (2007) Dynamics of fibers growing inside soft vesicles. Europhys Lett 80:48004.
-
(2007)
Europhys Lett
, vol.80
, pp. 48004
-
-
Marenduzzo, D.1
Orlandini, E.2
-
45
-
-
23044516336
-
From the double-stranded helix to the chiral nematic phase of B-DNA: A molecular model
-
Tombolato F, Ferrarini A (2005) From the double-stranded helix to the chiral nematic phase of B-DNA: A molecular model. J Chem Phys 122:54908-54908.
-
(2005)
J Chem Phys
, vol.122
, pp. 54908-54908
-
-
Tombolato, F.1
Ferrarini, A.2
-
46
-
-
38949099079
-
Production of highly knotted DNA by means of cosmid circularization inside phage capsids
-
Trigueros S, Roca J (2007) Production of highly knotted DNA by means of cosmid circularization inside phage capsids. BMC Biotechnol 7:94-94.
-
(2007)
BMC Biotechnol
, vol.7
, pp. 94-94
-
-
Trigueros, S.1
Roca, J.2
-
48
-
-
0026720147
-
Dynamics of double stranded DNA reptation from bacteriophage
-
Gabashvili IS, Grosberg AY (1992) Dynamics of double stranded DNA reptation from bacteriophage. J Biomol Struct Dyn 9:911-920.
-
(1992)
J Biomol Struct Dyn
, vol.9
, pp. 911-920
-
-
Gabashvili, I.S.1
Grosberg, A.Y.2
-
50
-
-
61449215083
-
Knot-controlled ejection of a polymer from a virus capsid
-
Matthews R, Louis AA, Yeomans JM (2009) Knot-controlled ejection of a polymer from a virus capsid. Phys Rev Lett 102:088101-088101.
-
(2009)
Phys Rev Lett
, vol.102
, pp. 088101-088101
-
-
Matthews, R.1
Louis, A.A.2
Yeomans, J.M.3
-
51
-
-
0035794251
-
Translocation of a confined polymer through a hole
-
Muthukumar M (2001) Translocation of a confined polymer through a hole. Phys Rev Lett 86:3188-3191.
-
(2001)
Phys Rev Lett
, vol.86
, pp. 3188-3191
-
-
Muthukumar, M.1
-
52
-
-
0343417367
-
Dynamics of entangled linear polymer melts: A moleculardynamics simulation
-
Kremer K, Grest G (1990) Dynamics of entangled linear polymer melts: A moleculardynamics simulation. J Chem Phys 92:5057-5086.
-
(1990)
J Chem Phys
, vol.92
, pp. 5057-5086
-
-
Kremer, K.1
Grest, G.2
-
53
-
-
0034318344
-
Elastic moduli renormalization in self-interacting stretchable polyelectrolytes
-
Podgornik R, Hansen PL, Parsegian VA (2000) Elastic moduli renormalization in self-interacting stretchable polyelectrolytes. J Chem Phys 113:9343-9350.
-
(2000)
J Chem Phys
, vol.113
, pp. 9343-9350
-
-
Podgornik, R.1
Hansen, P.L.2
Parsegian, V.A.3
-
54
-
-
41449113042
-
The role of DNA twist in the packaging of viral genomes
-
Rollins GC, Petrov AS, Harvey SC (2008) The role of DNA twist in the packaging of viral genomes. Biophys J 94:38-40.
-
(2008)
Biophys J
, vol.94
, pp. 38-40
-
-
Rollins, G.C.1
Petrov, A.S.2
Harvey, S.C.3
-
55
-
-
35548932556
-
A statistical approach to close packing of elastic rods and to DNA packaging in viral capsids
-
Katzav E, Adda-Bedia M, Boudaoud A (2006) A statistical approach to close packing of elastic rods and to DNA packaging in viral capsids. Proc Natl Acad Sci USA 103:18900-18904.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18900-18904
-
-
Katzav, E.1
Adda-Bedia, M.2
Boudaoud, A.3
-
56
-
-
48549100410
-
DNA knotting in spooling like conformations in Bacteriophages
-
Arsuaga J, Diao Y (2008) DNA knotting in spooling like conformations in Bacteriophages. J Comp Math Meth Med 9:303-316.
-
(2008)
J Comp Math Meth Med
, vol.9
, pp. 303-316
-
-
Arsuaga, J.1
Diao, Y.2
|