-
1
-
-
13844299144
-
The family feud: Do proteins with similar structures fold via the same pathway?
-
Zarrine-Afsar A, Larson SM, Davidson AR (2005) The family feud: Do proteins with similar structures fold via the same pathway? Curr Opin Struct Biol 15:42-49.
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 42-49
-
-
Zarrine-Afsar, A.1
Larson, S.M.2
Davidson, A.R.3
-
2
-
-
0036829967
-
Complete change of the protein folding transition state upon circular permutation
-
Lindberg M, Tangrot J, Oliveberg M (2002) Complete change of the protein folding transition state upon circular permutation. Nat Struct Biol 9:818-822.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 818-822
-
-
Lindberg, M.1
Tangrot, J.2
Oliveberg, M.3
-
3
-
-
33747592347
-
The experimental survey of protein-folding energy landscapes
-
Oliveberg M, Wolynes PG (2005) The experimental survey of protein-folding energy landscapes. Q Rev Biophys 38:245-288.
-
(2005)
Q Rev Biophys
, vol.38
, pp. 245-288
-
-
Oliveberg, M.1
Wolynes, P.G.2
-
4
-
-
0037221599
-
Is there a unifying mechanism for protein folding?
-
Daggett V, Fersht AR (2003) Is there a unifying mechanism for protein folding? Trends Biochem Sci 28:18-25.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 18-25
-
-
Daggett, V.1
Fersht, A.R.2
-
5
-
-
33846916730
-
Malleability of protein folding pathways: A simple reason for complex behaviour
-
Lindberg MO, Oliveberg M (2007) Malleability of protein folding pathways: A simple reason for complex behaviour. Curr Opin Struct Biol 17:21-29.
-
(2007)
Curr Opin Struct Biol
, vol.17
, pp. 21-29
-
-
Lindberg, M.O.1
Oliveberg, M.2
-
6
-
-
0028203301
-
Crystal structure of the ribosomal protein S6 from Thermus thermophilus
-
Lindahl M, et al. (1994) Crystal structure of the ribosomal protein S6 from Thermus thermophilus. EMBO J 13:1249-1254.
-
(1994)
EMBO J
, vol.13
, pp. 1249-1254
-
-
Lindahl, M.1
-
7
-
-
33645227425
-
Identification of the minimal protein-folding nucleus through loop-entropy perturbations
-
Lindberg MO, Haglund E, Hubner IA, Shakhnovich EI, Oliveberg M (2006) Identification of the minimal protein-folding nucleus through loop-entropy perturbations. Proc Natl Acad Sci USA 103:4083-4088.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4083-4088
-
-
Lindberg, M.O.1
Haglund, E.2
Hubner, I.A.3
Shakhnovich, E.I.4
Oliveberg, M.5
-
8
-
-
55549098922
-
Changes of protein folding pathways by circular permutation. Overlapping nuclei promote global cooperativity
-
Haglund E, Lindberg MO, Oliveberg M (2008) Changes of protein folding pathways by circular permutation. Overlapping nuclei promote global cooperativity J Biol Chem 283:27904-27915.
-
(2008)
J Biol Chem
, vol.283
, pp. 27904-27915
-
-
Haglund, E.1
Lindberg, M.O.2
Oliveberg, M.3
-
11
-
-
41249094534
-
The folding pathway of a single domain in a multidomain protein is not affected by its neighbouring domain
-
Batey S, Clarke J (2008) The folding pathway of a single domain in a multidomain protein is not affected by its neighbouring domain. J Mol Biol 378:297-301.
-
(2008)
J Mol Biol
, vol.378
, pp. 297-301
-
-
Batey, S.1
Clarke, J.2
-
12
-
-
33745931359
-
Multiple routes lead to the native state in the energy landscape of the beta-trefoil family
-
Chavez LL, Gosavi S, Jennings PA, Onuchic JN (2006) Multiple routes lead to the native state in the energy landscape of the beta-trefoil family. Proc Natl Acad Sci USA 103:10254-10258.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 10254-10258
-
-
Chavez, L.L.1
Gosavi, S.2
Jennings, P.A.3
Onuchic, J.N.4
-
13
-
-
0035824886
-
Folding of circular permutants with decreased contact order: General trend balanced by protein stability
-
Lindberg MO, et al. (2001) Folding of circular permutants with decreased contact order: General trend balanced by protein stability. J Mol Biol 314:891-900.
-
(2001)
J Mol Biol
, vol.314
, pp. 891-900
-
-
Lindberg, M.O.1
-
14
-
-
42449151176
-
Protein folding and misfolding: Mechanism and principles
-
Englander SW, Mayne L, Krishna MM (2007) Protein folding and misfolding: Mechanism and principles. Q Rev Biophys 40:287-326.
-
(2007)
Q Rev Biophys
, vol.40
, pp. 287-326
-
-
Englander, S.W.1
Mayne, L.2
Krishna, M.M.3
-
15
-
-
0035075187
-
Kinetics of unfolding and folding from amide hydrogen exchange in native ubiquitin
-
Sivaraman T, Arrington CB, Robertson AD (2001) Kinetics of unfolding and folding from amide hydrogen exchange in native ubiquitin. Nat Struct Biol 8:331-333.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 331-333
-
-
Sivaraman, T.1
Arrington, C.B.2
Robertson, A.D.3
-
16
-
-
0034703474
-
Two proteins with the same structure respond very differently to mutation: The role of plasticity in protein stability
-
Cota E, Hamill SJ, Fowler SB, Clarke J (2000) Two proteins with the same structure respond very differently to mutation: The role of plasticity in protein stability. J Mol Biol 302:713-725.
-
(2000)
J Mol Biol
, vol.302
, pp. 713-725
-
-
Cota, E.1
Hamill, S.J.2
Fowler, S.B.3
Clarke, J.4
-
17
-
-
0031202280
-
Hydrogen exchange at equilibrium: A short cut for analysing protein-folding pathways?
-
Clarke J, Itzhaki LS, Fersht AR (1997) Hydrogen exchange at equilibrium: A short cut for analysing protein-folding pathways? Trends Biochem Sci 22:284-287.
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 284-287
-
-
Clarke, J.1
Itzhaki, L.S.2
Fersht, A.R.3
-
18
-
-
0344936741
-
Native-state HX
-
author reply 379-381
-
Englander SW (1998) Native-state HX. Trends Biochem Sci 23:378; author reply 379-381.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 378
-
-
Englander, S.W.1
-
19
-
-
0029643523
-
Protein folding intermediates: Native-state hydrogen exchange
-
Bai Y, Sosnick TR, Mayne L, Englander SW (1995) Protein folding intermediates: Native-state hydrogen exchange. Science 269:192-197.
-
(1995)
Science
, vol.269
, pp. 192-197
-
-
Bai, Y.1
Sosnick, T.R.2
Mayne, L.3
Englander, S.W.4
-
20
-
-
0030334648
-
An evaluation of the use of hydrogen exchange at equilibrium to probe intermediates on the protein folding pathway
-
Clarke J, Fersht AR (1996) An evaluation of the use of hydrogen exchange at equilibrium to probe intermediates on the protein folding pathway. Fold Des 1:243-254.
-
(1996)
Fold Des
, vol.1
, pp. 243-254
-
-
Clarke, J.1
Fersht, A.R.2
-
22
-
-
0031552590
-
Hydrogen exchange in chymotrypsin inhibitor 2 probed by denaturants and temperature
-
Itzhaki LS, Neira JL, Fersht AR (1997) Hydrogen exchange in chymotrypsin inhibitor 2 probed by denaturants and temperature. J Mol Biol 270:89-98.
-
(1997)
J Mol Biol
, vol.270
, pp. 89-98
-
-
Itzhaki, L.S.1
Neira, J.L.2
Fersht, A.R.3
-
24
-
-
0029922493
-
Foldons, protein structural modules, and exons
-
Panchenko AR, Luthey-Schulten Z, Wolynes PG (1996) Foldons, protein structural modules, and exons. Proc Natl Acad Sci USA 93:2008-2013.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 2008-2013
-
-
Panchenko, A.R.1
Luthey-Schulten, Z.2
Wolynes, P.G.3
-
26
-
-
34247579591
-
Predicting coupling limits from an experimentally determined energy landscape
-
Street TO, Bradley CM, Barrick D (2007) Predicting coupling limits from an experimentally determined energy landscape. Proc Natl Acad Sci USA 104:4907-4912.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 4907-4912
-
-
Street, T.O.1
Bradley, C.M.2
Barrick, D.3
-
27
-
-
27744531924
-
The energy landscape of modular repeat proteins: Topology determines folding mechanism in the ankyrin family
-
Ferreiro DU, Cho SS, Komives EA, Wolynes PG (2005) The energy landscape of modular repeat proteins: Topology determines folding mechanism in the ankyrin family. J Mol Biol 354:679-692.
-
(2005)
J Mol Biol
, vol.354
, pp. 679-692
-
-
Ferreiro, D.U.1
Cho, S.S.2
Komives, E.A.3
Wolynes, P.G.4
-
29
-
-
0029746061
-
Detection of rare partially folded molecules in equilibrium with the native conformation of RNaseH
-
Chamberlain AK, Handel TM, Marqusee S (1996) Detection of rare partially folded molecules in equilibrium with the native conformation of RNaseH. Nat Struct Biol 3:782-787.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 782-787
-
-
Chamberlain, A.K.1
Handel, T.M.2
Marqusee, S.3
-
30
-
-
17044438189
-
A protein folding pathway with multiple folding intermediates at atomic resolution
-
Feng H, Zhou Z, Bai Y (2005) A protein folding pathway with multiple folding intermediates at atomic resolution. Proc Natl Acad Sci USA 102:5026-5031.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 5026-5031
-
-
Feng, H.1
Zhou, Z.2
Bai, Y.3
-
31
-
-
0036408312
-
Thermodynamic and kinetic exploration of the energy landscape of Borrelia burgdorferi OspA by native-state hydrogen exchange
-
Yan S, Kennedy SD, Koide S (2002) Thermodynamic and kinetic exploration of the energy landscape of Borrelia burgdorferi OspA by native-state hydrogen exchange. J Mol Biol 323:363-375.
-
(2002)
J Mol Biol
, vol.323
, pp. 363-375
-
-
Yan, S.1
Kennedy, S.D.2
Koide, S.3
-
33
-
-
24644481440
-
A funneled energy landscape for cytochrome c directly predicts the sequential folding route inferred from hydrogen exchange experiments
-
Weinkam P, Zong C, Wolynes PG (2005) A funneled energy landscape for cytochrome c directly predicts the sequential folding route inferred from hydrogen exchange experiments. Proc Natl Acad Sci USA 102:12401-12406.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12401-12406
-
-
Weinkam, P.1
Zong, C.2
Wolynes, P.G.3
-
34
-
-
33751411136
-
Folding of S6 structures with divergent amino acid composition: Pathway flexibility within partly overlapping foldons
-
Olofsson M, Hansson S, Hedberg L, Logan DT, Oliveberg M (2007) Folding of S6 structures with divergent amino acid composition: Pathway flexibility within partly overlapping foldons. J Mol Biol 365:237-248.
-
(2007)
J Mol Biol
, vol.365
, pp. 237-248
-
-
Olofsson, M.1
Hansson, S.2
Hedberg, L.3
Logan, D.T.4
Oliveberg, M.5
-
36
-
-
0033580679
-
Structural changes in the transition state of protein folding: Alternative interpretations of curved chevron plots
-
Otzen DE, Kristensen O, Proctor M, Oliveberg M (1999) Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots. Biochemistry 38:6499-6511.
-
(1999)
Biochemistry
, vol.38
, pp. 6499-6511
-
-
Otzen, D.E.1
Kristensen, O.2
Proctor, M.3
Oliveberg, M.4
-
37
-
-
0347722841
-
Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients
-
Sattler M, Schleucher J, Griesinger C (1999) Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients. Prog NMR Spectrosc 34:66.
-
(1999)
Prog NMR Spectrosc
, vol.34
, pp. 66
-
-
Sattler, M.1
Schleucher, J.2
Griesinger, C.3
-
38
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu G, Delaglio F, Bax A (1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR 13:289-302.
-
(1999)
J Biomol NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
39
-
-
0026597444
-
Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
-
Brünger AT (1992) Free R value: A novel statistical quantity for assessing the accuracy of crystal structures. Nature 355:472-475.
-
(1992)
Nature
, vol.355
, pp. 472-475
-
-
Brünger, A.T.1
-
40
-
-
0028282555
-
Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation
-
Farrow NA, et al. (1994) Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation. Biochemistry 33:5984-6003.
-
(1994)
Biochemistry
, vol.33
, pp. 5984-6003
-
-
Farrow, N.A.1
-
41
-
-
0000195671
-
Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy
-
Bodenhausen G, Ruben DJ (1980) Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy. Chem Phys Lett 69:185-189.
-
(1980)
Chem Phys Lett
, vol.69
, pp. 185-189
-
-
Bodenhausen, G.1
Ruben, D.J.2
-
42
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio F, et al. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277-293.
-
(1995)
J Biomol NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
|