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Volumn 106, Issue 51, 2009, Pages 21766-21770

Mutation patterns in cancer genomes

Author keywords

CpG island; Dinucleotide hotspot; Mutation and selection; Mutational asymmetry

Indexed keywords

NUCLEOTIDE;

EID: 76049094187     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0912499106     Document Type: Article
Times cited : (67)

References (38)
  • 1
    • 33749993417 scopus 로고    scopus 로고
    • The consensus coding sequences ofhumanbreast and colorectal cancers
    • Sjöblom T, et al. (2006) The consensus coding sequences ofhumanbreast and colorectal cancers. Science 314:268-274.
    • (2006) Science , vol.314 , pp. 268-274
    • Sjöblom, T.1
  • 2
    • 33947101019 scopus 로고    scopus 로고
    • Patterns of somatic mutation in human cancer genomes
    • Greenman C, et al. (2007) Patterns of somatic mutation in human cancer genomes. Nature 446:153-158.
    • (2007) Nature , vol.446 , pp. 153-158
    • Greenman, C.1
  • 3
    • 36248962105 scopus 로고    scopus 로고
    • The genomic landscapes ofhumanbreast and colorectal cancers
    • WoodLD
    • WoodLD, et al. (2007) The genomic landscapes ofhumanbreast and colorectal cancers. Science 318:1108-1113.
    • (2007) Science , vol.318 , pp. 1108-1113
  • 4
    • 52149123619 scopus 로고    scopus 로고
    • Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
    • Jones S, et al. (2008) Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 321:1801-1806.
    • (2008) Science , vol.321 , pp. 1801-1806
    • Jones, S.1
  • 5
    • 52949127312 scopus 로고    scopus 로고
    • An integrated genomic analysis of human glioblastoma multiforme
    • Parsons DW, et al. (2008) An integrated genomic analysis of human glioblastoma multiforme. Science 321:1807-1812.
    • (2008) Science , vol.321 , pp. 1807-1812
    • Parsons, D.W.1
  • 6
    • 0020317308 scopus 로고
    • Patterns of nucleotide substitution in pseudogenes and functional genes
    • Gojobori T, Li WH, Graur D (1982) Patterns of nucleotide substitution in pseudogenes and functional genes. J Mol Evol 18:360-369.
    • (1982) J Mol Evol , vol.18 , pp. 360-369
    • Gojobori, T.1    Li, W.H.2    Graur, D.3
  • 7
    • 0021710490 scopus 로고
    • Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications
    • Li WH, Wu CI, Luo CC (1984) Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications. J Mol Evol 21:58-71.
    • (1984) J Mol Evol , vol.21 , pp. 58-71
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 8
    • 0026631005 scopus 로고
    • The influence of nearest neighbors on the rate and pattern of spontaneous point mutations
    • Blake RD, Hess ST, Nicholson-Tuell J (1992) The influence of nearest neighbors on the rate and pattern of spontaneous point mutations. J Mol Evol 34:189-200.
    • (1992) J Mol Evol , vol.34 , pp. 189-200
    • Blake, R.D.1    Hess, S.T.2    Nicholson-Tuell, J.3
  • 9
    • 0028294455 scopus 로고
    • Wide variations in neighbor-dependent substitution rates
    • Hess ST, Blake JD, Blake RD (1994) Wide variations in neighbor-dependent substitution rates. J Mol Biol 236:1022-1033.
    • (1994) J Mol Biol , vol.236 , pp. 1022-1033
    • Hess, S.T.1    Blake, J.D.2    Blake, R.D.3
  • 10
    • 0042329754 scopus 로고    scopus 로고
    • Structure, function and evolution of CpG island promoters
    • Antequera F (2003) Structure, function and evolution of CpG island promoters. Cell Mol Life Sci 60:1647-1658.
    • (2003) Cell Mol Life Sci , vol.60 , pp. 1647-1658
    • Antequera, F.1
  • 11
    • 0037380022 scopus 로고    scopus 로고
    • Green P, Ewing B, Miller W, Thomas PJ, NISC Comparative Sequencing Program, Green ED (2003) Transcription-associated mutational asymmetry in mammalian evolution. Nat Genet 33:514-517.
    • Green P, Ewing B, Miller W, Thomas PJ, NISC Comparative Sequencing Program, Green ED (2003) Transcription-associated mutational asymmetry in mammalian evolution. Nat Genet 33:514-517.
  • 12
    • 0042887665 scopus 로고    scopus 로고
    • Dependence of mutational asymmetry on gene-expression levels in the human genome
    • Majewski J (2003) Dependence of mutational asymmetry on gene-expression levels in the human genome. Am J Hum Genet 73:688-692.
    • (2003) Am J Hum Genet , vol.73 , pp. 688-692
    • Majewski, J.1
  • 13
    • 3843068862 scopus 로고    scopus 로고
    • Selective and mutational patterns associated with gene expression in humans: Influences on synonymous composition and intron presence
    • Comeron JM (2004) Selective and mutational patterns associated with gene expression in humans: Influences on synonymous composition and intron presence. Genetics 167:1293-1304.
    • (2004) Genetics , vol.167 , pp. 1293-1304
    • Comeron, J.M.1
  • 14
    • 0032860238 scopus 로고    scopus 로고
    • Asymmetric substitution patterns: A review of possible underlying mutational or selective mechanisms
    • Frank AC, Lobry JR (1999) Asymmetric substitution patterns: A review of possible underlying mutational or selective mechanisms. Gene 238:65-77.
    • (1999) Gene , vol.238 , pp. 65-77
    • Frank, A.C.1    Lobry, J.R.2
  • 15
    • 0034984412 scopus 로고    scopus 로고
    • Deamination as the basis of strand-asymmetric evolution in transcribed Escherichia coli sequences
    • Francino MP, Ochman H (2001) Deamination as the basis of strand-asymmetric evolution in transcribed Escherichia coli sequences. Mol Biol Evol 18:1147-1150.
    • (2001) Mol Biol Evol , vol.18 , pp. 1147-1150
    • Francino, M.P.1    Ochman, H.2
  • 16
    • 20044381123 scopus 로고    scopus 로고
    • A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer
    • Stephens P, et al. (2005) A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer. Nat Genet 37:590-592.
    • (2005) Nat Genet , vol.37 , pp. 590-592
    • Stephens, P.1
  • 17
    • 4644300141 scopus 로고    scopus 로고
    • Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution
    • Hwang DG, Green P (2004) Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution. Proc Natl Acad Sci USA 101:13994-14001.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 13994-14001
    • Hwang, D.G.1    Green, P.2
  • 18
    • 0034694958 scopus 로고    scopus 로고
    • Role in tumorigenesis of silent mutations in the TP53 gene
    • Strauss BS (2000) Role in tumorigenesis of silent mutations in the TP53 gene. Mutat Res 457:93-104.
    • (2000) Mutat Res , vol.457 , pp. 93-104
    • Strauss, B.S.1
  • 19
    • 0343621494 scopus 로고    scopus 로고
    • Aberrant CpG-island methylation has non-random and tumour-type-specific patterns
    • Costello JF, et al. (2000) Aberrant CpG-island methylation has non-random and tumour-type-specific patterns. Nat Genet 24:132-138.
    • (2000) Nat Genet , vol.24 , pp. 132-138
    • Costello, J.F.1
  • 20
    • 0037068312 scopus 로고    scopus 로고
    • CpG island hypermethylation and tumor suppressor genes: A booming present, a brighter future
    • Esteller M (2002) CpG island hypermethylation and tumor suppressor genes: A booming present, a brighter future. Oncogene 21:5427-5440.
    • (2002) Oncogene , vol.21 , pp. 5427-5440
    • Esteller, M.1
  • 21
    • 36749025213 scopus 로고    scopus 로고
    • Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer
    • Shen L, et al. (2007) Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer. Proc Natl Acad Sci USA 104:18654-18659.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 18654-18659
    • Shen, L.1
  • 22
    • 59149084538 scopus 로고    scopus 로고
    • The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
    • Irizarry RA, et al. (2009) The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet 41:178-186.
    • (2009) Nat Genet , vol.41 , pp. 178-186
    • Irizarry, R.A.1
  • 23
    • 0030902720 scopus 로고    scopus 로고
    • Mutagenic and epigenetic effects of DNA methylation
    • Gonzalgo ML, Jones PA (1997) Mutagenic and epigenetic effects of DNA methylation. Mutat Res 386:107-118.
    • (1997) Mutat Res , vol.386 , pp. 107-118
    • Gonzalgo, M.L.1    Jones, P.A.2
  • 24
    • 24344500211 scopus 로고    scopus 로고
    • Initial sequence of the chimpanzee genome and comparison with the human genome
    • The Chimpanzee Sequencing and Analysis Consortium
    • The Chimpanzee Sequencing and Analysis Consortium. (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437:69-87.
    • (2005) Nature , vol.437 , pp. 69-87
  • 25
    • 34548680046 scopus 로고    scopus 로고
    • Comment on The consensus coding sequences of human breast and colorectal cancers
    • Forrest WF, Cavet G (2007) Comment on "The consensus coding sequences of human breast and colorectal cancers." Science 317:1500a.
    • (2007) Science , vol.317
    • Forrest, W.F.1    Cavet, G.2
  • 26
    • 34548680046 scopus 로고    scopus 로고
    • Comment on The consensus coding sequences of human breast and colorectal cancers
    • Getz G, et al. (2007) Comment on "The consensus coding sequences of human breast and colorectal cancers." Science 317:1500b.
    • (2007) Science , vol.317
    • Getz, G.1
  • 27
    • 34548680046 scopus 로고    scopus 로고
    • Comment on The consensus coding sequences of human breast and colorectal cancers
    • Rubin AF, Green P (2007) Comment on "The consensus coding sequences of human breast and colorectal cancers." Science 317:1500c.
    • (2007) Science , vol.317
    • Rubin, A.F.1    Green, P.2
  • 28
    • 33846057724 scopus 로고    scopus 로고
    • National Center for Biotechnology Information reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T, Maglott DR (2007) National Center for Biotechnology Information reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35:D61-D65.
    • (2007) Nucleic Acids Res , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 29
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • Bird AP (1986) CpG-rich islands and the function of DNA methylation. Nature 321:209-213.
    • (1986) Nature , vol.321 , pp. 209-213
    • Bird, A.P.1
  • 30
    • 10944251591 scopus 로고    scopus 로고
    • Repair and genetic consequences of endogenousDNAbase damage in mammalian cells
    • Barnes DE, Lindahl T (2004) Repair and genetic consequences of endogenousDNAbase damage in mammalian cells. Annu Rev Genet 38:445-476.
    • (2004) Annu Rev Genet , vol.38 , pp. 445-476
    • Barnes, D.E.1    Lindahl, T.2
  • 31
    • 34247200133 scopus 로고    scopus 로고
    • Novel markers for differentiation of lobular and ductal invasive breast carcinomas by laser microdissection and microarray analysis
    • Turashvili G, et al. (2007) Novel markers for differentiation of lobular and ductal invasive breast carcinomas by laser microdissection and microarray analysis. BMC Cancer 7:55.
    • (2007) BMC Cancer , vol.7 , pp. 55
    • Turashvili, G.1
  • 32
    • 56749157389 scopus 로고    scopus 로고
    • Transcription-coupled DNA repair: Two decades of progress and surprises
    • Hanawalt PC, Spivak G (2008) Transcription-coupled DNA repair: Two decades of progress and surprises. Nat Rev Mol Cell Biol 9:958-970.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 958-970
    • Hanawalt, P.C.1    Spivak, G.2
  • 33
    • 2442646694 scopus 로고    scopus 로고
    • Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification
    • Paez JG, et al. (2004) Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification. Nucleic Acids Res 32:e71.
    • (2004) Nucleic Acids Res , vol.32
    • Paez, J.G.1
  • 34
    • 38549131376 scopus 로고    scopus 로고
    • The UCSC Genome Browser Database: 2008 update
    • Karolchik D, et al. (2008) The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res 36:D773-D779.
    • (2008) Nucleic Acids Res , vol.36
    • Karolchik, D.1
  • 35
    • 33846064113 scopus 로고    scopus 로고
    • National Center for Biotechnology Information GEO: Mining tens of millions of expression profiles - Database and tools update
    • Barrett T, et al. (2007) National Center for Biotechnology Information GEO: Mining tens of millions of expression profiles - Database and tools update. Nucleic Acids Res 35:D760-D765.
    • (2007) Nucleic Acids Res , vol.35
    • Barrett, T.1
  • 36
    • 67650064594 scopus 로고    scopus 로고
    • The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
    • Pruitt KD, et al. (2009) The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. Genome Res 19:1316-1323.
    • (2009) Genome Res , vol.19 , pp. 1316-1323
    • Pruitt, K.D.1
  • 37
    • 5344244656 scopus 로고    scopus 로고
    • R Development Core Team , R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team (2008) R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, Vienna, Austria).
    • (2008) R: A Language and Environment for Statistical Computing
  • 38
    • 0023734126 scopus 로고
    • Approximate interval estimation of the ratio of binomial parameters: A review and corrections for skewness
    • Gart JJ, Nam J (1988) Approximate interval estimation of the ratio of binomial parameters: A review and corrections for skewness. Biometrics 44:323-338.
    • (1988) Biometrics , vol.44 , pp. 323-338
    • Gart, J.J.1    Nam, J.2


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