Physical mapping of wheat aquaporin genes

Theoretical and Applied Genetics

Volumn 120, Issue 4, 2010, Pages 863-873

  Forrest, Kerrie L ^a,b   Bhave, Mrinal ^a  

^a SWINBURNE UNIVERSITY OF TECHNOLOGY   (Australia)

^b LA TROBE UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ABIOTIC-STRESS RESPONSE; ANEUPLOIDS; AQUAPORINS; CELLULAR MEMBRANES; COMPARATIVE MAPS; GENE FAMILIES; GENOMIC LOCATIONS; IN-SILICO; OSMOTIC STRESS; PHYSICAL MAPPING; SYNTENY; WATER CHANNEL PROTEINS; WATER PERMEABILITY; WATER RELATIONS; WATER UPTAKE;

MAPPING; MAPS; PROTEINS; TOBACCO;

GENES;

AQUAPORIN; MEMBRANE PROTEIN; TONOPLAST INTRINSIC PROTEIN, PLANT; VEGETABLE PROTEIN;

ARTICLE; CHROMOSOME MAP; GENETICS; PLANT GENE; RICE; WHEAT;

AQUAPORINS; GENES, PLANT; MEMBRANE PROTEINS; ORYZA SATIVA; PHYSICAL CHROMOSOME MAPPING; PLANT PROTEINS; TRITICUM;

HORDEUM; PIPS; TRITICUM AESTIVUM;

EID: 76049093009     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-1217-9     Document Type: Article

References (42)

1. Agre P, Sasaki S, Chrispeels M (1993) Aquaporins: a family of water channel proteins. Am J Physiol 261: F461.
2. Chaumont F, Barrieu F, Wojcik E, Chrispeels MJ, Jung R (2001) Aquaporins constitute a large and highly divergent protein family in maize. Plant Physiol 125: 1206-1215.
3. Chaumont F, Moshelion M, Daniels MJ (2005) Regulation of plant aquaporin activity. Biol Cell 97: 749-764.
4. Cho S, Garvin DF, Muehlbauer GJ (2006) Transcriptome analysis and physical mapping of barley genes in wheat-barley chromosome addition lines. Genetics 172: 1277-1285.
5. Danielson JA, Johanson U (2008) Unexpected complexity of the Aquaporin gene family in the moss Physcomitrella patens. BMC Plant Biol 8: 45.
6. Devos KM, Dubcovsky J, Dvorak J, Chinoy CN, Gale MD (1995) Structural evolution of wheat chromosomes 4A, 5A and 7B and its impact on recombination. Theor Appl Genet 91: 282-288.
7. Forrest KL, Bhave M (2007) Major Intrinsic Proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype. Funct Integr Genomics 7: 263-289.
8. Forrest KL, Bhave M (2008) The PIP and TIP aquaporins in wheat form a large and diverse family with unique gene structures and functionally important features. Funct Integr Genomics 8: 115-133.
9. Gale MD, Devos KM (1998) Comparative genetics in the grasses. Proc Natl Acad Sci USA 95: 1971-1974.
10. Guo L, Wang ZY, Lin H, Cui WE, Chen J, Liu M, Chen ZL, Qu LJ, Gu H (2006) Expression and functional analysis of the rice plasma-membrane intrinsic protein gene family. Cell Res 16: 277-286.
11. Hachez C, Zelazny E, Chaumont F (2006) Modulating the expression of aquaporin genes in planta: a key to understand their physiological functions? Biochim Biophys Acta Biomembr 1758: 1142-1156.
12. Hedfalk K, Tornroth-Horsefield S, Nyblom M, Johanson U, Kjellbom P, Neutze R (2006) Aquaporin gating. Curr Opin Struct Biol 16: 447-456.
13. Heymann JB, Engel A (2000) Structural clues in the sequences of the aquaporins. J Mol Biol 295: 1039-1053.
14. Huang S, Spielmeyer W, Lagudah ES, Munns R (2008) Comparative mapping of HKT genes in wheat, barley, and rice, key determinants of Na+ transport, and salt tolerance. J Exp Bot 59: 927-937.
15. Johanson U, Karlsson M, Johansson I, Gustavsson S, Sjövall S, Fraysse L, Weig AR, Kjellbom P (2001) The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants. Plant Physiol 126: 1358-1369.
16. Kaldenhoff R, Fischer M (2006) Functional aquaporin diversity in plants. Biochim Biophys Acta Biomembr 1758: 1134-1141.
17. Kaldenhoff R, Grote K, Zhu J-J, Zimmerman U (1998) Significance of plasmalemma aquaporins for water transport in Arabidopsis thaliana. Plant J 14: 121-128.
18. Kammholz SJ, Campbell AW, Sutherland MW, Hollamby GJ, Martin PJ, Eastwood RF, Barclay I, Wilson RE, Brennan PS, Sheppard JA (2001) Establishment and characterisation of wheat genetic mapping populations. Aust J Agric Res 52: 1079-1088.
19. Kato K, Nakamura W, Tabiki T, Miura H, Sawada S (2001) Detection of loci controlling seed dormancy on group 4 chromosomes of wheat and comparative mapping with rice and barley genomes. Theor Appl Genet 102: 980-985.
20. Kawasaki S, Borchert C, Deyholes M, Wang H, Brazille S, Kawai K, Galbraith D, Bohnert HJ (2001) Gene expression profiles during the initial phase of salt stress in rice. Plant Cell 13: 889-905.
21. La Rota M, Sorrells ME (2004) Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat. Funct Integr Genomics 4: 34-46.
22. Li L, Li S, Tao Y, Kitagawa Y (2000) Molecular cloning of a novel water channel from rice: its products expression in Xenopus oocytes and involvement in chilling tolerance. Plant Sci 154: 43-51.
23. Lian H-L, Yu X, Ye Q, Ding X, Kitagawa Y, Kwak S-S, Su W-A, Tang Z-C (2004) The role of aquaporin RWC3 in drought avoidance in rice. Plant Cell Physiol 45: 481-489.
24. Liu Q, Umeda M, Uchimiya H (1994) Isolation and expression analysis of two rice genes encoding the major intrinsic protein. Plant Mol Biol 26: 2003-2007.
25. Liu HY, Yu X, Cui DY, Sun MH, Sun WN, Tang ZC, Kwak SS, Su WA (2007) The role of water channel proteins and nitric oxide signaling in rice seed germination. Cell Res 17: 638-649.
26. Luu D-T, Maurel C (2005) Aquaporins in a challenging environment: molecular gears for adjusting plant water status. Plant Cell Environ 28: 85-96.
27. Malz S, Sauter M (1999) Expression of two PIP genes in rapidly growing internodes of rice is not primarily controlled by meristem activity or cell expansion. Plant Mol Biol 40: 985-995.
28. Mares D, Mrva K, Cheong J, Williams K, Watson B, Storlie E, Sutherland M, Zou Y (2005) A QTL located on chromosome 4A associated with dormancy in white- and red-grained wheats of diverse origin. Theor Appl Genet 111: 1357-1364.
29. Maurel C (1997) Aquaporins and water permeability of plant membranes. Annu Rev Plant Physiol Plant Mol Biol 48: 399-429.
30. Qi LL, Echalier B, Chao S, Lazo GR, Butler GE, Anderson OD, Akhunov ED, Dvorak J, Linkiewicz AM, Ratnasiri A, Dubcovsky J, Bermudez-Kandianis CE, Greene RA, Kantety R, La Rota CM, Munkvold JD, Sorrells SF, Sorrells ME, Dilbirligi M, Sidhu D, Erayman M, Randhawa HS, Sandhu D, Bondareva SN, Gill KS, Mahmoud AA, Ma X-F, Miftahudin Gustafson JP, Conley EJ, Nduati V, Gonzalez-Hernandez JL, Anderson JA, Peng JH, Lapitan NLV, Hossain KG, Kalavacharla V, Kianian SF, Pathan MS, Zhang DS, Nguyen HT, Choi D-W, Fenton RD, Close TJ, McGuire PE, Qualset CO, Gill BS (2004) A chromosome bin map of 16, 000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat. Genetics 168: 701-712.
31. Qi L, Friebe B, Gill BS (2006) Complex genome rearrangements reveal evolutionary dynamics of pericentromeric regions in the Triticeae. Genome Biol 49: 1628-1639.
32. Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M (2005) Identification of 33 rice aquaporin genes and analysis of their expression and function. Plant Cell Physiol 46: 1568-1577.
33. Sakurai J, Ahamed A, Murai M, Maeshima M, Uemura M (2008) Tissue- and cell-specific localization of rice aquaporins and their water transport activities. Plant Cell Physiol 49: 30-39.
34. Singh NK, Dalal V, Batra K, Singh BK, Chitra G, Singh A, Ghazi IA, Yadav MJ, Pandit A, Dixit R, Singh PK, Singh H, Koundal KR, Gaikwad K, Mohapatra T, Sharma TR (2007) Single-copy genes define a conserved order between rice and wheat for understanding differences caused by duplication, deletion, and transposition of genes. Funct Integr Genomics 7: 17-35.
35. Sorrells ME, La Rota M, Bermudez-Kandianis CE, Greene RA, Kantety R, Munkvold JD, Miftahudin Mahmoud A, Ma X, Gustafson PJ, Qi LL, Echalier B, Gill BS, Matthews DE, Lazo GR, Chao S, Anderson OD, Edwards H, Linkiewicz AM, Dubcovsky J, Akhunov ED, Dvorak J, Zhang D, Nguyen HT, Peng J, Lapitan NLV, Gonzalez-Hernandez JL, Anderson JA, Hossain K, Kalavacharla V, Kianian SF, Choi D-W, Close TJ, Dilbirligi M, Gill KS, Steber C, Walker-Simmons MK, McGuire PE, Qualset CO (2003) Comparative DNA sequence analysis of wheat and rice genomes. Genome Res 13: 1818-1827.
36. Sourdille P, Singh S, Cadalen T, Brown-Guedira GL, Gay G, Qi L, Gill BS, Dufour P, Murigneux A, Bernard M (2004) Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Funct Integr Genomics 4: 12-25.
37. Takahashi H, Rai M, Kitagawa T, Morita S, Masumura T, Tanaka K (2004) Differential localization of tonoplast intrinsic proteins on the membrane of protein body type II and aleurone grain in rice seeds. Biosci Biotechnol Biochem 68: 1728-1736.
38. Thiel T, Graner A, Waugh R, Grosse I, Close TJ, Stein N (2009) Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evol Biol 9: 209.
39. Törnroth-Horsefield S, Wang Y, Hedfalk K, Johanson U, Karlsson M, Tajkhorshid E, Neutze R, Kjellbom P (2006) Structural mechanism of plant aquaporin gating. Nature 439: 688-694.
40. Tyerman S, Bohnert H, Maurel C, Steudle E, Smith J (1999) Plant aquaporins: their molecular biology, biophysics and significance for plant water relations. J Exp Bot 50: 1055-1071.
41. Wallace IS, Roberts DM (2004) Homology modeling of representative subfamilies of arabidopsis major intrinsic proteins. Classification based on the aromatic/arginine selectivity filter. Plant Physiol 135: 1059-1068.
42. Yu X, Peng YH, Zhang MH, Shao YJ, Su WA, Tang ZC (2006) Water relations and an expression analysis of plasma membrane intrinsic proteins in sensitive and tolerant rice during chilling and recovery. Cell Res 16: 599-608.