메뉴 건너뛰기




Volumn 135, Issue 2, 2004, Pages 1059-1068

Homology modeling of representative subfamilies of Arabidopsis major intrinsic proteins. Classification based on the aromatic/arginine selectivity filter

Author keywords

[No Author keywords available]

Indexed keywords

CELL MEMBRANES; COMPUTATIONAL METHODS; CRYSTAL STRUCTURE; GLYCEROL; HYDROGEN BONDS;

EID: 3042583806     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.033415     Document Type: Article
Times cited : (195)

References (42)
  • 2
    • 0033151856 scopus 로고    scopus 로고
    • The Nicotiana tabacum plasma membrane aquaporin NtAQP1 is mercury-insensitive and permeable for glycerol
    • Biela A, Grote K, Otto B, Hoth S, Hedrich R, Kaldenhoff R (1999) The Nicotiana tabacum plasma membrane aquaporin NtAQP1 is mercury-insensitive and permeable for glycerol. Plant J 18: 565-570
    • (1999) Plant J , vol.18 , pp. 565-570
    • Biela, A.1    Grote, K.2    Otto, B.3    Hoth, S.4    Hedrich, R.5    Kaldenhoff, R.6
  • 3
    • 0033520342 scopus 로고    scopus 로고
    • Functional reconstitution and characterization of AqpZ, the E. coli water channel protein
    • Borgnia MJ, Kozono D, Calamita G, Maloney PC, Agre P (1999) Functional reconstitution and characterization of AqpZ, the E. coli water channel protein. J Mol Biol 291: 1169-1179
    • (1999) J Mol Biol , vol.291 , pp. 1169-1179
    • Borgnia, M.J.1    Kozono, D.2    Calamita, G.3    Maloney, P.C.4    Agre, P.5
  • 4
    • 0033996879 scopus 로고    scopus 로고
    • Plasma membrane intrinsic proteins from maize cluster in two sequence subgroups with differential aquaporin activity
    • Chaumont F, Barrieu F, Jung R, Chrispeels MJ (2000) Plasma membrane intrinsic proteins from maize cluster in two sequence subgroups with differential aquaporin activity. Plant Physiol 122: 1025-1034
    • (2000) Plant Physiol , vol.122 , pp. 1025-1034
    • Chaumont, F.1    Barrieu, F.2    Jung, R.3    Chrispeels, M.J.4
  • 5
    • 0035106823 scopus 로고    scopus 로고
    • Aquaporins constitute a large and highly divergent protein family in maize
    • Chaumont F, Barrieu F, Wojcik E, Chrispeels MJ, Jung R (2001) Aquaporins constitute a large and highly divergent protein family in maize. Plant Physiol 125: 1206-1215
    • (2001) Plant Physiol , vol.125 , pp. 1206-1215
    • Chaumont, F.1    Barrieu, F.2    Wojcik, E.3    Chrispeels, M.J.4    Jung, R.5
  • 6
    • 0033579547 scopus 로고    scopus 로고
    • Projection structure of a plant vacuole membrane aquaporin by electron cryo-crystallography
    • Daniels MJ, Chrispeels MJ, Yeager M (1999) Projection structure of a plant vacuole membrane aquaporin by electron cryo-crystallography. J Mol Biol 294: 1337-1349
    • (1999) J Mol Biol , vol.294 , pp. 1337-1349
    • Daniels, M.J.1    Chrispeels, M.J.2    Yeager, M.3
  • 7
    • 0033524436 scopus 로고    scopus 로고
    • Purification and functional reconstitution of soybean nodulin 26: An aquaporin with water and glycerol transport properties
    • Dean RM, Rivers RL, Zeidel ML, Roberts DM (1999) Purification and functional reconstitution of soybean nodulin 26: an aquaporin with water and glycerol transport properties. Biochemistry 38: 347-353
    • (1999) Biochemistry , vol.38 , pp. 347-353
    • Dean, R.M.1    Rivers, R.L.2    Zeidel, M.L.3    Roberts, D.M.4
  • 8
    • 0035861454 scopus 로고    scopus 로고
    • Water permeation across biological membranes: Mechanism and dynamics of aquaporin-1 and GIpF
    • de Groot BL, Grubmuller H (2001) Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GIpF. Science 294: 2353-2357
    • (2001) Science , vol.294 , pp. 2353-2357
    • De Groot, B.L.1    Grubmuller, H.2
  • 9
    • 0034161393 scopus 로고    scopus 로고
    • The importance of aquaporin water channel protein structures
    • Engel A, Fujiyoshi Y, Agre P (2000) The importance of aquaporin water channel protein structures. EMBO J 19: 800-806
    • (2000) EMBO J , vol.19 , pp. 800-806
    • Engel, A.1    Fujiyoshi, Y.2    Agre, P.3
  • 10
    • 0031777369 scopus 로고    scopus 로고
    • Prediction of functional residues in water channels and related proteins
    • Froger A, Tallur B, Thomas D, Delamarche C (1998) Prediction of functional residues in water channels and related proteins. Protein Sci 7: 1458-1468
    • (1998) Protein Sci , vol.7 , pp. 1458-1468
    • Froger, A.1    Tallur, B.2    Thomas, D.3    Delamarche, C.4
  • 12
    • 0036011030 scopus 로고    scopus 로고
    • The water permeability of Arabidopsis plasma membrane is regulated by divalent cations and pH
    • Gerbeau P, Amodeo G, Henzler T, Santoni V, Ripoche P, Maurel C (2002) The water permeability of Arabidopsis plasma membrane is regulated by divalent cations and pH. Plant J 30: 71-81
    • (2002) Plant J , vol.30 , pp. 71-81
    • Gerbeau, P.1    Amodeo, G.2    Henzler, T.3    Santoni, V.4    Ripoche, P.5    Maurel, C.6
  • 13
    • 0037394367 scopus 로고    scopus 로고
    • Phosphorylation of nodulin 26 on serine 262 enhances water permeability and is regulated developmentally and by osmotic signals
    • Guenther JF, Chanmanivone N, Galetovic MP, Wallace IS, Cobb JA, Roberts DM (2003) Phosphorylation of nodulin 26 on serine 262 enhances water permeability and is regulated developmentally and by osmotic signals. Plant Cell 15: 981-991
    • (2003) Plant Cell , vol.15 , pp. 981-991
    • Guenther, J.F.1    Chanmanivone, N.2    Galetovic, M.P.3    Wallace, I.S.4    Cobb, J.A.5    Roberts, D.M.6
  • 14
    • 0034060156 scopus 로고    scopus 로고
    • Water-selective and multifunctional aquaporins from Lotus japonicus nodules
    • Guenther JF, Roberts DM (2000) Water-selective and multifunctional aquaporins from Lotus japonicus nodules. Planta 210: 741-748
    • (2000) Planta , vol.210 , pp. 741-748
    • Guenther, J.F.1    Roberts, D.M.2
  • 15
    • 0036221680 scopus 로고    scopus 로고
    • A new subfamily of major intrinsic proteins in plants
    • Johanson U, Gustavsson S (2002) A new subfamily of major intrinsic proteins in plants. Mol Biol Evol 19: 456-461
    • (2002) Mol Biol Evol , vol.19 , pp. 456-461
    • Johanson, U.1    Gustavsson, S.2
  • 16
    • 0034870819 scopus 로고    scopus 로고
    • The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants
    • Johanson U, Karlsson M, Johansson I, Gustavsson S, Sjovall S, Fraysse L, Weig AR, Kjellbom P (2001) The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants. Plant Physiol 126: 1358-1369
    • (2001) Plant Physiol , vol.126 , pp. 1358-1369
    • Johanson, U.1    Karlsson, M.2    Johansson, I.3    Gustavsson, S.4    Sjovall, S.5    Fraysse, L.6    Weig, A.R.7    Kjellbom, P.8
  • 18
  • 19
    • 0030199138 scopus 로고    scopus 로고
    • The major integral proteins of spinach leaf plasma membranes are putative aquaporins and are phosphorylated in response to Ca2+ and apoplastic water potential
    • Johansson I, Larsson C, Ek B, Kjellbom P (1996) The major integral proteins of spinach leaf plasma membranes are putative aquaporins and are phosphorylated in response to Ca2+ and apoplastic water potential. Plant Cell 8: 1181-1191
    • (1996) Plant Cell , vol.8 , pp. 1181-1191
    • Johansson, I.1    Larsson, C.2    Ek, B.3    Kjellbom, P.4
  • 20
    • 0028318868 scopus 로고
    • Molecular structure of the water channel through aquaporin CHIP. The hourglass model
    • Jung JS, Preston GM, Smith BL, Guggino WB, Agre P (1994) Molecular structure of the water channel through aquaporin CHIP. The hourglass model. J Biol Chem 269: 14648-14654
    • (1994) J Biol Chem , vol.269 , pp. 14648-14654
    • Jung, J.S.1    Preston, G.M.2    Smith, B.L.3    Guggino, W.B.4    Agre, P.5
  • 21
    • 0028486220 scopus 로고
    • Water channels in the plant plasma membrane cloned by immunoselection from a mammalian expression system
    • Kammerloher W, Fischer U, Piechottka GP, Schaffner AR (1994) Water channels in the plant plasma membrane cloned by immunoselection from a mammalian expression system. Plant J 6: 187-199
    • (1994) Plant J , vol.6 , pp. 187-199
    • Kammerloher, W.1    Fischer, U.2    Piechottka, G.P.3    Schaffner, A.R.4
  • 25
    • 0026754015 scopus 로고
    • Accurate modeling of protein conformation by automatic segment matching
    • Levitt M (1992) Accurate modeling of protein conformation by automatic segment matching. J Mol Biol 226: 507-533
    • (1992) J Mol Biol , vol.226 , pp. 507-533
    • Levitt, M.1
  • 26
    • 0034657264 scopus 로고    scopus 로고
    • Molecular cloning of a novel water channel from rice: Its products expression in Xenopus oocytes and involvement in chilling tolerance
    • Li L, Li S, Tao Y, Kitagawa Y (2000) Molecular cloning of a novel water channel from rice: its products expression in Xenopus oocytes and involvement in chilling tolerance. Plant Sci 154: 43-51
    • (2000) Plant Sci , vol.154 , pp. 43-51
    • Li, L.1    Li, S.2    Tao, Y.3    Kitagawa, Y.4
  • 28
    • 0027192036 scopus 로고
    • The vacuolar membrane protein γ-TIP creates water specific channels in Xenopus oocytes
    • Maurel C, Reizer J, Schroeder JI, Chrispeels MJ (1993) The vacuolar membrane protein γ-TIP creates water specific channels in Xenopus oocytes. EMBO J 12: 2241-2247
    • (1993) EMBO J , vol.12 , pp. 2241-2247
    • Maurel, C.1    Reizer, J.2    Schroeder, J.I.3    Chrispeels, M.J.4
  • 29
    • 0029910115 scopus 로고    scopus 로고
    • Phylogenetic characterization of the MIP family of transmembrane channel proteins
    • Park JH, Saier MH, Jr. (1996) Phylogenetic characterization of the MIP family of transmembrane channel proteins. J Membr Biol 153: 171-180
    • (1996) J Membr Biol , vol.153 , pp. 171-180
    • Park, J.H.1    Saier Jr., M.H.2
  • 31
    • 0027233420 scopus 로고
    • The MIP family of integral membrane channel proteins: Sequence comparisons, evolutionary relationships, reconstructed pathway of evolution, and proposed functional differentiation of the two repeated halves of the proteins
    • Reizer J, Reizer A, Saier MH Jr (1993) The MIP family of integral membrane channel proteins: sequence comparisons, evolutionary relationships, reconstructed pathway of evolution, and proposed functional differentiation of the two repeated halves of the proteins. Crit Rev Biochem Mol Biol 28: 235-257
    • (1993) Crit Rev Biochem Mol Biol , vol.28 , pp. 235-257
    • Reizer, J.1    Reizer, A.2    Saier Jr., M.H.3
  • 32
    • 0030985888 scopus 로고    scopus 로고
    • Functional analysis of nodulin 26, an aquaporin in soybean root nodule symbiosomes
    • Rivers RL, Dean RM, Chandy G, Hall JE, Roberts DM, Zeidel ML (1997) Functional analysis of nodulin 26, an aquaporin in soybean root nodule symbiosomes. J Biol Chem 272: 16256-16261
    • (1997) J Biol Chem , vol.272 , pp. 16256-16261
    • Rivers, R.L.1    Dean, R.M.2    Chandy, G.3    Hall, J.E.4    Roberts, D.M.5    Zeidel, M.L.6
  • 33
    • 0032581907 scopus 로고    scopus 로고
    • Practical evaluation of comparative modeling and threading methods
    • Schoonman MJL, Knegtel RMA, Grootenhuis PDJ (1998) Practical evaluation of comparative modeling and threading methods. Comput Chem 22: 369-375
    • (1998) Comput Chem , vol.22 , pp. 369-375
    • Schoonman, M.J.L.1    Knegtel, R.M.A.2    Grootenhuis, P.D.J.3
  • 35
    • 0035924329 scopus 로고    scopus 로고
    • Structural basis of water-specific transport through the AQP1 water channel
    • Sui H, Han BG, Lee JK, Walian P, Jap BK (2001) Structural basis of water-specific transport through the AQP1 water channel. Nature 414: 872-878
    • (2001) Nature , vol.414 , pp. 872-878
    • Sui, H.1    Han, B.G.2    Lee, J.K.3    Walian, P.4    Jap, B.K.5
  • 38
    • 0036187202 scopus 로고    scopus 로고
    • Plant aquaporins: Multifunctional water and solute channels with expanding roles
    • Tyerman SD, Niemietz CM, Bramley H (2002) Plant aquaporins: multifunctional water and solute channels with expanding roles. Plant Cell Environ 25: 173-194
    • (2002) Plant Cell Environ , vol.25 , pp. 173-194
    • Tyerman, S.D.1    Niemietz, C.M.2    Bramley, H.3
  • 39
    • 0037125208 scopus 로고    scopus 로고
    • Functional selectivity for glycerol of the nodulin 26 subfamily of plant membrane intrinsic proteins
    • Wallace IS, Wills DM, Guenther JF, Roberts DM (2002) Functional selectivity for glycerol of the nodulin 26 subfamily of plant membrane intrinsic proteins. FEBS Lett 523: 109-112
    • (2002) FEBS Lett , vol.523 , pp. 109-112
    • Wallace, I.S.1    Wills, D.M.2    Guenther, J.F.3    Roberts, D.M.4
  • 40
    • 0031200862 scopus 로고    scopus 로고
    • The major intrinsic protein family of Arabidopsis has 23 members that form three distinct groups with functional aquaporins in each group
    • Weig A, Deswarte C, Chrispeels MJ (1997) The major intrinsic protein family of Arabidopsis has 23 members that form three distinct groups with functional aquaporins in each group. Plant Physiol 114: 1347-1357
    • (1997) Plant Physiol , vol.114 , pp. 1347-1357
    • Weig, A.1    Deswarte, C.2    Chrispeels, M.J.3
  • 41
    • 0034703362 scopus 로고    scopus 로고
    • Functional identification of the glycerol permease activity of Arabidopsis thaliana NLM1 and NLM2 proteins by heterologous expression in Saccharomyces cerevisiae
    • Weig AR, Jakob C (2000) Functional identification of the glycerol permease activity of Arabidopsis thaliana NLM1 and NLM2 proteins by heterologous expression in Saccharomyces cerevisiae. FEBS Lett 481: 293-298
    • (2000) FEBS Lett , vol.481 , pp. 293-298
    • Weig, A.R.1    Jakob, C.2
  • 42
    • 0026806764 scopus 로고
    • Reconstitution of functional water channels in liposomes containing purified red cell CHIP28 protein
    • Zeidel ML, Ambudkar SV, Smith BL, Agre P (1992) Reconstitution of functional water channels in liposomes containing purified red cell CHIP28 protein. Biochemistry 31: 7436-7440
    • (1992) Biochemistry , vol.31 , pp. 7436-7440
    • Zeidel, M.L.1    Ambudkar, S.V.2    Smith, B.L.3    Agre, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.