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Volumn 392, Issue 2, 2010, Pages 145-149

Selection and validation of reference genes for real-time RT-PCR studies in the non-model species Delomys sublineatus, an endemic Brazilian rodent

Author keywords

BestKeeper; geNorm; Normalization; NormFinder; Relative quantification; Software programs

Indexed keywords

COMPLEMENTARY DNA;

EID: 75949114872     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2009.12.173     Document Type: Article
Times cited : (15)

References (22)
  • 1
    • 70449535766 scopus 로고    scopus 로고
    • Circannual changes in the expression of vascular endothelial growth factor in the testis of roe deer (Capreolus capreolus)
    • Wagener A., Blottner S., Göritz F., et al. Circannual changes in the expression of vascular endothelial growth factor in the testis of roe deer (Capreolus capreolus). Anim. Reprod. Sci. 117 3-4 (2010) 275-278
    • (2010) Anim. Reprod. Sci. , vol.117 , Issue.3-4 , pp. 275-278
    • Wagener, A.1    Blottner, S.2    Göritz, F.3
  • 2
    • 69349093211 scopus 로고    scopus 로고
    • Environmental influences on epigenetic profiles
    • Suter M.A., and Aagaard-Tillery K.M. Environmental influences on epigenetic profiles. Semin. Reprod. Med. 27 5 (2009) 380-390
    • (2009) Semin. Reprod. Med. , vol.27 , Issue.5 , pp. 380-390
    • Suter, M.A.1    Aagaard-Tillery, K.M.2
  • 3
    • 0029964835 scopus 로고    scopus 로고
    • A novel method for real time quantitative RT-PCR
    • Gibson U.E., Heid C.A., and Williams P.M. A novel method for real time quantitative RT-PCR. Genome Res. 6 10 (1996) 995-1001
    • (1996) Genome Res. , vol.6 , Issue.10 , pp. 995-1001
    • Gibson, U.E.1    Heid, C.A.2    Williams, P.M.3
  • 4
    • 0029957181 scopus 로고    scopus 로고
    • Real time quantitative PCR
    • Heid C.A., Stevens J., Livak K.J., et al. Real time quantitative PCR. Genome Res. 6 10 (1996) 986-994
    • (1996) Genome Res. , vol.6 , Issue.10 , pp. 986-994
    • Heid, C.A.1    Stevens, J.2    Livak, K.J.3
  • 5
    • 0031919330 scopus 로고    scopus 로고
    • Real-time fluorescence detection of a single DNA molecule
    • Lockey C., Otto E., and Long Z. Real-time fluorescence detection of a single DNA molecule. Biotechniques 24 5 (1998) 744-746
    • (1998) Biotechniques , vol.24 , Issue.5 , pp. 744-746
    • Lockey, C.1    Otto, E.2    Long, Z.3
  • 6
    • 0036322741 scopus 로고    scopus 로고
    • Differential expression of GAPDH and beta3-actin in growing collateral arteries
    • Deindl E., Boengler K., van Royen N., et al. Differential expression of GAPDH and beta3-actin in growing collateral arteries. Mol. Cell. Biochem. 236 1-2 (2002) 139-146
    • (2002) Mol. Cell. Biochem. , vol.236 , Issue.1-2 , pp. 139-146
    • Deindl, E.1    Boengler, K.2    van Royen, N.3
  • 7
    • 0035577641 scopus 로고    scopus 로고
    • Identification and validation of endogenous reference genes for expression profiling of T helper cell differentiation by quantitative real-time RT-PCR
    • Hamalainen H.K., Tubman J.C., and Vikman S. Identification and validation of endogenous reference genes for expression profiling of T helper cell differentiation by quantitative real-time RT-PCR. Anal. Biochem. 299 1 (2001) 63-70
    • (2001) Anal. Biochem. , vol.299 , Issue.1 , pp. 63-70
    • Hamalainen, H.K.1    Tubman, J.C.2    Vikman, S.3
  • 8
    • 2942700135 scopus 로고    scopus 로고
    • Utility of the housekeeping genes 18S rRNA, beta-actin and glyceraldehyde-3-phosphate-dehydrogenase for normalization in real-time quantitative reverse transcriptase-polymerase chain reaction analysis of gene expression in human T lymphocytes
    • Bas A., Frosberg G., Hammarström S., et al. Utility of the housekeeping genes 18S rRNA, beta-actin and glyceraldehyde-3-phosphate-dehydrogenase for normalization in real-time quantitative reverse transcriptase-polymerase chain reaction analysis of gene expression in human T lymphocytes. Scand. J. Immunol. 59 6 (2004) 566-573
    • (2004) Scand. J. Immunol. , vol.59 , Issue.6 , pp. 566-573
    • Bas, A.1    Frosberg, G.2    Hammarström, S.3
  • 9
    • 47749143202 scopus 로고    scopus 로고
    • Reference gene selection for real-time RT-PCR in regenerating mouse livers
    • Tatsumi K., Ohashi K., Taminishi S., et al. Reference gene selection for real-time RT-PCR in regenerating mouse livers. Biochem. Biophys. Res. Commun. 374 1 (2008) 106-110
    • (2008) Biochem. Biophys. Res. Commun. , vol.374 , Issue.1 , pp. 106-110
    • Tatsumi, K.1    Ohashi, K.2    Taminishi, S.3
  • 10
    • 53349089297 scopus 로고    scopus 로고
    • Selection of internal reference genes for SYBR green qRT-PCR studies of rhesus monkey (Macaca mulatta) tissues
    • Ahn K., Huh J.W., Park S.J., et al. Selection of internal reference genes for SYBR green qRT-PCR studies of rhesus monkey (Macaca mulatta) tissues. BMC Mol. Biol. 9 (2008) 78
    • (2008) BMC Mol. Biol. , vol.9 , pp. 78
    • Ahn, K.1    Huh, J.W.2    Park, S.J.3
  • 11
    • 39849089161 scopus 로고    scopus 로고
    • Housekeeping genes for quantitative expression studies in the three-spined stickleback Gasterosteus aculeatus
    • Hibbeler S., Scharsack J.P., and Becker S. Housekeeping genes for quantitative expression studies in the three-spined stickleback Gasterosteus aculeatus. BMC Mol. Biol. 9 (2008) 18
    • (2008) BMC Mol. Biol. , vol.9 , pp. 18
    • Hibbeler, S.1    Scharsack, J.P.2    Becker, S.3
  • 12
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., and Orntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 64 15 (2004) 5245-5250
    • (2004) Cancer Res. , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 13
    • 58149196189 scopus 로고    scopus 로고
    • RTPrimerDB: the portal for real-time PCR primers and probes
    • Lefever S., Vandesompele J., Speleman F., et al. RTPrimerDB: the portal for real-time PCR primers and probes. Nucleic Acids Res. 37 Database issue (2009) D942-D945
    • (2009) Nucleic Acids Res. , vol.37 , Issue.Database issue
    • Lefever, S.1    Vandesompele, J.2    Speleman, F.3
  • 14
    • 58949097577 scopus 로고    scopus 로고
    • A comprehensive collection of experimentally validated primers for polymerase chain reaction quantitation of murine transcript abundance
    • Spandidos A., Wang X., Wang H., et al. A comprehensive collection of experimentally validated primers for polymerase chain reaction quantitation of murine transcript abundance. BMC Genomics 9 (2008) 633
    • (2008) BMC Genomics , vol.9 , pp. 633
    • Spandidos, A.1    Wang, X.2    Wang, H.3
  • 15
    • 85074914953 scopus 로고    scopus 로고
    • A PCR primer bank for quantitative gene expression analysis
    • Wang X., and Seed B. A PCR primer bank for quantitative gene expression analysis. Nucleic Acids Res. 31 24 (2003) e154
    • (2003) Nucleic Acids Res. , vol.31 , Issue.24
    • Wang, X.1    Seed, B.2
  • 16
    • 44349083040 scopus 로고    scopus 로고
    • Responses of five small mammal species to micro-scale variations in vegetation structure in secondary Atlantic Forest remnants, Brazil
    • Puttker T., Pardini R., Meyer-Lucht Y., et al. Responses of five small mammal species to micro-scale variations in vegetation structure in secondary Atlantic Forest remnants, Brazil. BMC Ecol. 8 (2008) 9
    • (2008) BMC Ecol. , vol.8 , pp. 9
    • Puttker, T.1    Pardini, R.2    Meyer-Lucht, Y.3
  • 17
    • 38349167328 scopus 로고    scopus 로고
    • Fragmentation effects on population density of three rodent species in secondary Atlantic Rainforest, Brazil
    • Puttker T., Meyer-Lucht Y., and Sommer S. Fragmentation effects on population density of three rodent species in secondary Atlantic Rainforest, Brazil. Stud. Neotropical Fauna Environ. 43 1 (2008) 11-18
    • (2008) Stud. Neotropical Fauna Environ. , vol.43 , Issue.1 , pp. 11-18
    • Puttker, T.1    Meyer-Lucht, Y.2    Sommer, S.3
  • 18
    • 38149114670 scopus 로고    scopus 로고
    • Effects of fragmentation on parasite burden (nematodes) of generalist and specialist small mammal species in secondary forest fragments of the coastal Atlantic Forest, Brazil
    • Puttker T., Meyer-Lucht Y., and Sommer S. Effects of fragmentation on parasite burden (nematodes) of generalist and specialist small mammal species in secondary forest fragments of the coastal Atlantic Forest, Brazil. Ecol. Res. 23 (2008) 207-215
    • (2008) Ecol. Res. , vol.23 , pp. 207-215
    • Puttker, T.1    Meyer-Lucht, Y.2    Sommer, S.3
  • 19
    • 28444495698 scopus 로고    scopus 로고
    • sixth ed, The Johns Hopkins University Press, Baltimore/London
    • R.M. Nowak, Walker's Mammals of the World, sixth ed., vol. 2, The Johns Hopkins University Press, Baltimore/London, 1999, pp. 1344-1346.
    • (1999) Walker's Mammals of the World , vol.2 , pp. 1344-1346
    • Nowak, R.M.1
  • 20
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • Pfaffl M.W., Tichopad A., Prgomet C., et al. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnol. Lett. 26 6 (2004) 509-515
    • (2004) Biotechnol. Lett. , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3
  • 21
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele J., De Preter K., Pattyn F., et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3 7 (2002) RESEARCH0034
    • (2002) Genome Biol. , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3
  • 22
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems
    • Bustin S.A. Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J. Mol. Endocrinol. 29 1 (2002) 23-39
    • (2002) J. Mol. Endocrinol. , vol.29 , Issue.1 , pp. 23-39
    • Bustin, S.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.