메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

A comprehensive collection of experimentally validated primers for Polymerase Chain Reaction quantitation of murine transcript abundance

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA MICROARRAY; DNA SEQUENCE; GEL ELECTROPHORESIS; GENE AMPLIFICATION; GENETIC ALGORITHM; GENETIC TRANSCRIPTION; MOUSE; NONHUMAN; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; SEQUENCE ANALYSIS; VALIDATION STUDY; AGAR GEL ELECTROPHORESIS; ALGORITHM; ANIMAL; CHEMISTRY; COMPUTER PROGRAM; GENETIC DATABASE; INTERNET; METHODOLOGY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY;

EID: 58949097577     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-633     Document Type: Article
Times cited : (214)

References (59)
  • 2
    • 0037134017 scopus 로고    scopus 로고
    • A technique whose time has come
    • 11964485
    • Walker NJ A technique whose time has come Science 2002, 296:557-559. 11964485
    • (2002) Science , vol.296 , pp. 557-559
    • Walker, N.J.1
  • 3
    • 34447286890 scopus 로고    scopus 로고
    • Expression profiling using affymetrix genechip probe arrays
    • 17568117
    • Schinke-Braun M Couget JA Expression profiling using affymetrix genechip probe arrays Methods Mol Biol 2007, 366:13-40. 17568117
    • (2007) Methods Mol Biol , vol.366 , pp. 13-40
    • Schinke-Braun, M.1    Couget, J.A.2
  • 4
    • 14744306436 scopus 로고
    • Simultaneous amplification and detection of specific DNA sequences
    • 1368485
    • Higuchi R Dollinger G Walsh PS Griffith R Simultaneous amplification and detection of specific DNA sequences Biotechnology (N Y) 1992, 10(4):413-417. 1368485
    • (1992) Biotechnology (N Y) , vol.10 , Issue.4 , pp. 413-417
    • Higuchi, R.1    Dollinger, G.2    Walsh, P.S.3    Griffith, R.4
  • 5
    • 15744381713 scopus 로고
    • Kinetic PCR analysis: Real-time monitoring of DNA amplification reactions
    • 7764001
    • Higuchi R Fockler C Dollinger G Watson R Kinetic PCR analysis: Real-time monitoring of DNA amplification reactions Biotechnology (N Y) 1993, 11(9):1026-1030. 7764001
    • (1993) Biotechnology (N Y) , vol.11 , Issue.9 , pp. 1026-1030
    • Higuchi, R.1    Fockler, C.2    Dollinger, G.3    Watson, R.4
  • 6
    • 0022372670 scopus 로고
    • Enzymatic amplification of beta-globin genomic sequences and restirction site analysis for diagnosis of sickle cell anaemia
    • 2999980
    • Saiki R Scharf S Faloona F Mullis KB Horn GT Erlich HA Arnheim N Enzymatic amplification of beta-globin genomic sequences and restirction site analysis for diagnosis of sickle cell anaemia Science 1985, 230(4732):1350-1354. 2999980
    • (1985) Science , vol.230 , Issue.4732 , pp. 1350-1354
    • Saiki, R.1    Scharf, S.2    Faloona, F.3    Mullis, K.B.4    Horn, G.T.5    Erlich, H.A.6    Arnheim, N.7
  • 7
    • 0023022499 scopus 로고
    • Analysis of enzymatically amplified beta-globin and HLA-DQ alpha DNA with allele-specific oligonucleotide probes
    • 3785382
    • Saiki R Bugawan TL Horn GT Mullis KB Erlich HA Analysis of enzymatically amplified beta-globin and HLA-DQ alpha DNA with allele-specific oligonucleotide probes Nature 1986, 324(6093):163-166. 3785382
    • (1986) Nature , vol.324 , Issue.6093 , pp. 163-166
    • Saiki, R.1    Bugawan, T.L.2    Horn, G.T.3    Mullis, K.B.4    Erlich, H.A.5
  • 10
    • 0000706201 scopus 로고
    • Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer
    • 282592 3194390
    • Cardullo RA Agrawal S Flores C Zamecnik PC Wolf D Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer Proc Natl Acad Sci USA 1988, 85:8790-8794. 282592 3194390
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 8790-8794
    • Cardullo, R.A.1    Agrawal, S.2    Flores, C.3    Zamecnik, P.C.4    Wolf, D.5
  • 12
    • 0025861818 scopus 로고
    • Detection of specific polymerase chain reaction product by utilizing the 5′ to 3′ exonuclease activity of Thermus aquaticus DNA polymerase
    • 52277 1871133
    • Holland P Abramson RD Watson R Gelfand DH Detection of specific polymerase chain reaction product by utilizing the 5′ to 3′ exonuclease activity of Thermus aquaticus DNA polymerase Proc Natl Acad Sci USA 1991, 88:7276-7280. 52277 1871133
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 7276-7280
    • Holland, P.1    Abramson, R.D.2    Watson, R.3    Gelfand, D.H.4
  • 13
    • 0027291689 scopus 로고
    • Allelic discrimination by nick-translation PCR with fluorogenic probes
    • 309885 8367293
    • Lee LG Connell CR Bloch W Allelic discrimination by nick-translation PCR with fluorogenic probes Nucleic Acids Res 1993, 21(16):3761-3766. 309885 8367293
    • (1993) Nucleic Acids Res , vol.21 , Issue.16 , pp. 3761-3766
    • Lee, L.G.1    Connell, C.R.2    Bloch, W.3
  • 14
    • 0344614012 scopus 로고    scopus 로고
    • Accurate and rapid analysis of residual disease in patients with CML using specific fluorescent hybridization probes for real time quantitative RT-PCR
    • 10557058
    • Emig M Saussele S Wittor H Weisser A Reiter A Willer A Berger U Hehlmann R Cross NC Hochhaus A Accurate and rapid analysis of residual disease in patients with CML using specific fluorescent hybridization probes for real time quantitative RT-PCR Leukemia 1999, 13(11):1825-1832. 10557058
    • (1999) Leukemia , vol.13 , Issue.11 , pp. 1825-1832
    • Emig, M.1    Saussele, S.2    Wittor, H.3    Weisser, A.4    Reiter, A.5    Willer, A.6    Berger, U.7    Hehlmann, R.8    Cross, N.C.9    Hochhaus, A.10
  • 15
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridization
    • 9630890
    • Tyagi S Kramer FR Molecular beacons: Probes that fluoresce upon hybridization Nat Biotechnol 1996, 14(3):303-308. 9630890
    • (1996) Nat Biotechnol , vol.14 , Issue.3 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 17
    • 0032839195 scopus 로고    scopus 로고
    • Detection of PCR products using self-probing amplicons and fluorescence
    • 10429248
    • Whitcombe D Theaker J Guy SP Brown T Little S Detection of PCR products using self-probing amplicons and fluorescence Nat Biotechnol 1999, 17(8):804-807. 10429248
    • (1999) Nat Biotechnol , vol.17 , Issue.8 , pp. 804-807
    • Whitcombe, D.1    Theaker, J.2    Guy, S.P.3    Brown, T.4    Little, S.5
  • 18
    • 0032091098 scopus 로고    scopus 로고
    • Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification
    • 9631186
    • Morrison TB Weis JJ Wittwer CT Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification Biotechniques 1998, 24(6):954-958. 9631186
    • (1998) Biotechniques , vol.24 , Issue.6 , pp. 954-958
    • Morrison, T.B.1    Weis, J.J.2    Wittwer, C.T.3
  • 19
    • 0031022694 scopus 로고    scopus 로고
    • Continuous fluorescence monitoring of rapid cycle DNA amplification
    • 8994660
    • Wittwer CT Hermann MG Moss AA Rasmussen RP Continuous fluorescence monitoring of rapid cycle DNA amplification Biotechniques 1997, 22:130-138. 8994660
    • (1997) Biotechniques , vol.22 , pp. 130-138
    • Wittwer, C.T.1    Hermann, M.G.2    Moss, A.A.3    Rasmussen, R.P.4
  • 20
    • 3142708522 scopus 로고    scopus 로고
    • Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications
    • 484200 15249599
    • Zipper H Brunner H Bernhagen J Vitzthum F Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications Nucleic Acids Res 2004, 32(12):e103. 484200 15249599
    • (2004) Nucleic Acids Res , vol.32 , Issue.12
    • Zipper, H.1    Brunner, H.2    Bernhagen, J.3    Vitzthum, F.4
  • 21
    • 0031568919 scopus 로고    scopus 로고
    • Product differentiation by analysis of DNA melting curves during the Polymerase Chain Reaction
    • 9056205
    • Ririe KM Rasmussen RP Wittwer CT Product differentiation by analysis of DNA melting curves during the Polymerase Chain Reaction Anal Biochem 1997, 245:154-160. 9056205
    • (1997) Anal Biochem , vol.245 , pp. 154-160
    • Ririe, K.M.1    Rasmussen, R.P.2    Wittwer, C.T.3
  • 22
    • 19444372108 scopus 로고    scopus 로고
    • Osprey: A comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays
    • 521677 15456895
    • Gordon PMK Sensen CW Osprey: A comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays Nucleic Acids Res 2004, 32(17):e133. 521677 15456895
    • (2004) Nucleic Acids Res , vol.32 , Issue.17
    • Gordon, P.M.K.1    Sensen, C.W.2
  • 23
    • 34548738981 scopus 로고    scopus 로고
    • QPRIMER: A quick web-based application for designing conserved PCR primers from multigenome alignments
    • 17599926
    • Kim N Lee C QPRIMER: A quick web-based application for designing conserved PCR primers from multigenome alignments Bioinformatics 2007, 23(17):2331-2333. 17599926
    • (2007) Bioinformatics , vol.23 , Issue.17 , pp. 2331-2333
    • Kim, N.1    Lee, C.2
  • 24
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Totowa: Humana Press Inc Misener S, Krawetz SA
    • Rozen S Skaletsky H Primer3 on the WWW for general users and for biologist programmers Bioinformatics methods and protocols: Methods in molecular biology Totowa: Humana Press Inc Misener S, Krawetz SA 2000, 132:365-386.
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 26
    • 85074914953 scopus 로고    scopus 로고
    • A PCR primer bank for quantitative gene expression analysis
    • 291882 14654707
    • Wang X Seed B A PCR primer bank for quantitative gene expression analysis Nucleic Acids Res 2003, 31(24):e154. 291882 14654707
    • (2003) Nucleic Acids Res , vol.31 , Issue.24
    • Wang, X.1    Seed, B.2
  • 27
    • 0037958765 scopus 로고    scopus 로고
    • Selection of oligonucleotide probes for protein coding sequences
    • 12724288
    • Wang X Seed B Selection of oligonucleotide probes for protein coding sequences Bioinformatics 2003, 19:796-802. 12724288
    • (2003) Bioinformatics , vol.19 , pp. 796-802
    • Wang, X.1    Seed, B.2
  • 28
    • 0029901640 scopus 로고    scopus 로고
    • Analysis of compositionally biased regions in sequence databases
    • 8743706
    • Wootton JC Federhen S Analysis of compositionally biased regions in sequence databases Methods Enzymol 1996, 266:554-571. 8743706
    • (1996) Methods Enzymol , vol.266 , pp. 554-571
    • Wootton, J.C.1    Federhen, S.2
  • 29
    • 0028118638 scopus 로고
    • SIMPLE34: An improved and enhanced implementation for VAX and Sun computers of the SIMPLE algorithm for analysis of clustered repetitive motifs in nucleotide sequences
    • 7514951
    • Hancock JM Armstrong JS SIMPLE34: An improved and enhanced implementation for VAX and Sun computers of the SIMPLE algorithm for analysis of clustered repetitive motifs in nucleotide sequences Comput Appl Biosci 1994, 10:67-70. 7514951
    • (1994) Comput Appl Biosci , vol.10 , pp. 67-70
    • Hancock, J.M.1    Armstrong, J.S.2
  • 33
    • 2142749059 scopus 로고    scopus 로고
    • Demonstration of preferential binding of SYBR Green I to specific DNA fragments in real-time multiplex CR
    • 275573 14602929
    • Giglio S Monis PT Saint CP Demonstration of preferential binding of SYBR Green I to specific DNA fragments in real-time multiplex CR Nucleic Acids Res 2003, 31(22):e136. 275573 14602929
    • (2003) Nucleic Acids Res , vol.31 , Issue.22
    • Giglio, S.1    Monis, P.T.2    Saint, C.P.3
  • 34
    • 0032805947 scopus 로고    scopus 로고
    • A quantitative fluorescence-based microplate assay for the determination of double-stranded DNA using SYBR Green I and a standard ultraviolet transilluminator gel imaging system
    • 10585744
    • Vitzthum F Geiger G Bisswanger H Brunner H Bernhagen J A quantitative fluorescence-based microplate assay for the determination of double-stranded DNA using SYBR Green I and a standard ultraviolet transilluminator gel imaging system Anal Biochem 1999, 276(1):59-64. 10585744
    • (1999) Anal Biochem , vol.276 , Issue.1 , pp. 59-64
    • Vitzthum, F.1    Geiger, G.2    Bisswanger, H.3    Brunner, H.4    Bernhagen, J.5
  • 35
    • 58949102742 scopus 로고    scopus 로고
    • Data analysis on the ABI PRISM 7700 Sequence Detection System: Setting baselines and thresholds
    • Data analysis on the ABI PRISM 7700 Sequence Detection System: Setting baselines and thresholds Applied Biosystems 2002.
    • (2002) Applied Biosystems
  • 36
    • 0002129975 scopus 로고    scopus 로고
    • Quantification on the LightCycler
    • Heidelberg: Springer Meuer S, Wittwer C, Nakagawara K
    • Rasmussen R Quantification on the LightCycler Rapid Cycle Real-time PCR: Methods and Applications Heidelberg: Springer Meuer S, Wittwer C, Nakagawara K 2001, 21-34.
    • (2001) Rapid Cycle Real-time PCR: Methods and Applications , pp. 21-34
    • Rasmussen, R.1
  • 37
    • 27844522342 scopus 로고    scopus 로고
    • ABI PRISM 7700 Sequence Detection System, user bulletin 2
    • ABI PRISM 7700 Sequence Detection System, user bulletin 2 Applied Biosystems 2001.
    • (2001) Applied Biosystems
  • 38
    • 0036499301 scopus 로고    scopus 로고
    • A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics
    • 11846375
    • Liu W Saint DA A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics Anal Biochem 2002, 302:52-59. 11846375
    • (2002) Anal Biochem , vol.302 , pp. 52-59
    • Liu, W.1    Saint, D.A.2
  • 39
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • 12618301
    • Ramakers C Ruijter JM Lekanne Deprez RH Moorman AFM Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data Neurosci Lett 2003, 339:62-66. 12618301
    • (2003) Neurosci Lett , vol.339 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.M.2    Lekanne Deprez, R.H.3    Moorman, A.F.M.4
  • 40
    • 33748451624 scopus 로고    scopus 로고
    • Estimation of the reaction efficiency in polymerase chain reaction
    • 16843498
    • Lalam N Estimation of the reaction efficiency in polymerase chain reaction J Theor Biol 2006, 242(4):947-953. 16843498
    • (2006) J Theor Biol , vol.242 , Issue.4 , pp. 947-953
    • Lalam, N.1
  • 41
    • 16544384956 scopus 로고    scopus 로고
    • Sigmoidal curve-fitting redefines quantitative real-time PCR with the prospective of developing automated high-throughput applications
    • 545475 15601990
    • Rutledge RG Sigmoidal curve-fitting redefines quantitative real-time PCR with the prospective of developing automated high-throughput applications Nucleic Acids Res 2004, 32(22):e178. 545475 15601990
    • (2004) Nucleic Acids Res , vol.32 , Issue.22
    • Rutledge, R.G.1
  • 42
    • 1542356381 scopus 로고    scopus 로고
    • Standardized determination of real-time PCR efficiency from a single reaction set-up
    • 219490 14530455
    • Tichopad A Dilger M Schwarz G Pfaffl MW Standardized determination of real-time PCR efficiency from a single reaction set-up Nucleic Acids Res 2003, 31(20):e122. 219490 14530455
    • (2003) Nucleic Acids Res , vol.31 , Issue.20
    • Tichopad, A.1    Dilger, M.2    Schwarz, G.3    Pfaffl, M.W.4
  • 43
    • 0003270679 scopus 로고    scopus 로고
    • Statistical estimations of PCR amplification rates
    • Boston: Birkhauser Ferré F
    • Peccoud J Jacob C Statistical estimations of PCR amplification rates Gene Quantification Boston: Birkhauser Ferré F 1998, 111-128.
    • (1998) Gene Quantification , pp. 111-128
    • Peccoud, J.1    Jacob, C.2
  • 45
    • 10044267712 scopus 로고    scopus 로고
    • SAS programs for real-time RT-PCR having multiple independent samples
    • 15597549
    • Cook P Fu C Hickey M Han E-S Miller KS SAS programs for real-time RT-PCR having multiple independent samples Biotechniques 2004, 37(6):990-995. 15597549
    • (2004) Biotechniques , vol.37 , Issue.6 , pp. 990-995
    • Cook, P.1    Fu, C.2    Hickey, M.3    Han, E.-S.4    Miller, K.S.5
  • 46
    • 0345059080 scopus 로고    scopus 로고
    • Accurate and statistically verified quantification of relative mRNA abundances using SYBR Green I and real-time RT-PCR
    • 14659920
    • Marino JH Cook P Miller KS Accurate and statistically verified quantification of relative mRNA abundances using SYBR Green I and real-time RT-PCR J Immunol Methods 2003, 283:291-306. 14659920
    • (2003) J Immunol Methods , vol.283 , pp. 291-306
    • Marino, J.H.1    Cook, P.2    Miller, K.S.3
  • 48
    • 38549087004 scopus 로고    scopus 로고
    • Statistical tools for transgene copy number estimation based on real-time PCR
    • 2099498 18047729
    • Yuan JS Burris J Stewart NR Mentewab A Stewart CN Jr Statistical tools for transgene copy number estimation based on real-time PCR BMC Bioinformatics 2007, 8(Suppl 7):S6. 2099498 18047729
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 7
    • Yuan, J.S.1    Burris, J.2    Stewart, N.R.3    Mentewab, A.4    Stewart Jr., C.N.5
  • 49
    • 38849108075 scopus 로고    scopus 로고
    • Statistical methods for efficiency adjusted real-time PCR quantification
    • 18074404
    • Yuan JS Wang D Stewart CN Jr Statistical methods for efficiency adjusted real-time PCR quantification Biotechnol J 2008, 3:112-123. 18074404
    • (2008) Biotechnol J , vol.3 , pp. 112-123
    • Yuan, J.S.1    Wang, D.2    Stewart Jr., C.N.3
  • 52
    • 0037045398 scopus 로고    scopus 로고
    • ORF-FINDER: A vector for high-throughput gene identification
    • 11814675
    • Rombel IT Sykes KF Rayner S Johnston S ORF-FINDER: A vector for high-throughput gene identification Gene 2002, 282:33-41. 11814675
    • (2002) Gene , vol.282 , pp. 33-41
    • Rombel, I.T.1    Sykes, K.F.2    Rayner, S.3    Johnston, S.4
  • 53
    • 34347354302 scopus 로고    scopus 로고
    • Mutational and selective effects on copy-number variants in the human genome
    • 17597777
    • Cooper GM Nickerson DA Eichler EE Mutational and selective effects on copy-number variants in the human genome Nat Genet 2007, 39(7 Suppl):S22-S29. 17597777
    • (2007) Nat Genet , vol.39 , Issue.7 SUPPL.
    • Cooper, G.M.1    Nickerson, D.A.2    Eichler, E.E.3
  • 55
    • 33846052176 scopus 로고    scopus 로고
    • qPrimerDepot: A primer database for quantitative real time PCR
    • (Database) 1635330 17068075
    • Cui W Taub DD Gardner K qPrimerDepot: A primer database for quantitative real time PCR Nucleic Acids Res 2006, 35(Database):D805-D809. 1635330 17068075
    • (2006) Nucleic Acids Res
    • Cui, W.1    Taub, D.D.2    Gardner, K.3
  • 56
    • 0037248812 scopus 로고    scopus 로고
    • RTPrimerDB: The real-time PCR primer and probe database
    • 165458 12519963
    • Pattyn F Speleman F De Paepe A Vandesompele J RTPrimerDB: The real-time PCR primer and probe database Nucleic Acids Res 2003, 31:122-123. 165458 12519963
    • (2003) Nucleic Acids Res , vol.31 , pp. 122-123
    • Pattyn, F.1    Speleman, F.2    De Paepe, A.3    Vandesompele, J.4
  • 57
    • 33644878359 scopus 로고    scopus 로고
    • RTPrimerDB: The real-time PCR primer and probe database, major update 2006
    • (Database) 1347517 16381959
    • Pattyn F Robbrecht P De Paepe A Speleman F Vandesompele J RTPrimerDB: the real-time PCR primer and probe database, major update 2006 Nucleic Acids Res 2006, 34(Database):D684-D688. 1347517 16381959
    • (2006) Nucleic Acids Res
    • Pattyn, F.1    Robbrecht, P.2    De Paepe, A.3    Speleman, F.4    Vandesompele, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.