Use of fimH single-nucleotide polymorphisms for strain typing of clinical isolates of Escherichia coli for epidemiologic investigation

Journal of Clinical Microbiology

Volumn 48, Issue 2, 2010, Pages 483-488

  Dias, Rubens C S ^a,b   Moreira, Beatriz M ^a   Riley, Lee W ^b  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; PROTEIN FIMH; UNCLASSIFIED DRUG;

ARTICLE; BACTERIUM ISOLATION; CLINICAL ARTICLE; CONTROLLED STUDY; ESCHERICHIA COLI; FEMALE; GENE AMPLIFICATION; HUMAN; MALE; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; UNINDEXED SEQUENCE;

ESCHERICHIA COLI;

EID: 75649121100     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01858-09     Document Type: Article

References (21)

1. Reference deleted.
2. Clermont, O., S. Bonacorsi, and E. Bingen. 2000. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 66:4555-4558.
3. da Silva Dias, R. C., A. A. Borges-Neto, G. I. D'Almeida Ferraiuoli, M. P. de-Oliveira, L. W. Riley, and B. M. Moreira. 2008. Prevalence of AmpC and other beta-lactamases in enterobacteria at a large urban university hospital in Brazil. Diagn. Microbiol. Infect. Dis. 60:79-87.
4. Dias, R. C. S., D. V. Marangoni, S. P. Smith, E. M. Alves, F. L. P. C. Pellegrino, L. W. Riley, and B. M. Moreira. 2009. Clonal composition of Escherichia coli causing community-acquired urinary tract infections in the state of Rio de Janeiro, Brazil. Microb. Drug Resist. 15:303-308.
5. Dias, R. C. S., D. V. Marangoni, S. P. Smith, L. W. Riley, and B. M. Moreira. 2006. Clonal composition and antimicrobial resistance in uropathogenic Escherichia coli from Rio de Janeiro, Brazil, abstr. C2-0076. 46th Intersci. Conf. Antimicrob. Agents Chemother. American Society for Microbiology, Washington, DC.
6. Gordon, D. M., O. Clermont, H. Tolley, and E. Denamur. 2008. Assigning Escherichia coli strains to phylogenetic groups: multilocus sequence typing versus the PCR triplex method. Environ. Microbiol. 10:2484-2496.
7. Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
8. Reference deleted.
9. Johnson, J. R., A. R. Manges, T. T. O'Bryan, and L. W. Riley. 2002. A disseminated multidrug-resistant clonal group of uropathogenic Escherichia coli in pyelonephritis. Lancet 359:2249-2251.
10. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
11. Klemm, P., and G. Christiansen. 1987. Three fim genes required for the regulation of length and mediation of adhesion of Escherichia coli type 1 fimbriae. Mol. Gen. Genet. 208:439-445.
12. Maiden, M. C., J. A. Bygraves, E. Feil, G. Morelli, J. E. Russell, R. Urwin, Q. Zhang, J. Zhou, K. Zurth, D. A. Caugant, I. M. Feavers, M. Achtman, and B. G. Spratt. 1998. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. U. S. A. 95:3140-3145.
13. Manges, A. R., H. Tabor, P. Tellis, C. Vincent, and P.-P. Tellier. 2008. Endemic and epidemic lineages of Escherichia coli that cause urinary tract infections. Emerg. Infect. Dis. 14:1575-1583.
14. Manges, A. R., J. R. Johnson, B. Foxman, T. T. O'Bryan, K. E. Fullerton, and L. W. Riley. 2001. Widespread distribution of urinary tract infections caused by a multidrug-resistant Escherichia coli clonal group. N. Engl. J. Med. 345:1007-1013.
15. Nicolas-Chanoine, M.-H., J. Blanco, V. Leflon-Guibout, R. Demarty, M. P. Alonso, M. M. Caniça, Y.-J. Park, J.-P. Lavigne, J. Pitout, and J. R. Johnson. 2008. Intercontinental emergence of Escherichia coli clone O25:H4-ST13 producing CTX-M-15. J. Antimicrob. Chemother. 61:273-281.
16. Reference deleted.
17. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
18. Reference deleted.
19. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
20. Tartof, S. Y., O. D. Solberg, A. R. Manges, and L. W. Riley. 2005. Analysis of a uropathogenic Escherichia coli clonal group by multilocus sequence typing. J. Clin. Microbiol. 43:5860-5864.
21. Tartof, S. Y., O. D. Solberg, and L. W. Riley. 2007. Genotypic analyses of uropathogenic Escherichia coli based on fimH single nucleotide polymorphisms (SNPs). J. Med. Microbiol. 56:1363-1369.