Novel 3′-O-fluorescently modified nucleotides for reversible termination of DNA synthesis

ChemBioChem

Volumn 11, Issue 1, 2010, Pages 75-78

  Kim, Taek Soo ^a   Kim, Da Rae ^a   Ahn, Hee Chul ^a   Shin, Dongyun ^a   Ahn, Dae Ro ^a  

^a Korea Institute of Science and Technology   (South Korea)

Author keywords

DNA; Fluorescence; Next generation sequencing; Nucleotides; Reversible terminator; Sequencing by synthesis

Indexed keywords

COUMARIN DERIVATIVE; NUCLEOSIDE TRIPHOSPHATE; 7-HYDROXYCOUMARIN; DNA; DNA DIRECTED DNA POLYMERASE; FLUORESCENT DYE; NUCLEOTIDE; UMBELLIFERONE; UMBELLIFERONE DERIVATIVE;

ARTICLE; CHEMICAL ANALYSIS; CHEMICAL MODIFICATION; CONTROLLED STUDY; DEPROTECTION REACTION; DNA SEQUENCE; DNA SYNTHESIS INHIBITION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SYNTHESIS; BIOSYNTHESIS; CHEMISTRY; MASS SPECTROMETRY; METABOLISM; SPECTROFLUOROMETRY;

BASE SEQUENCE; DNA; DNA-DIRECTED DNA POLYMERASE; FLUORESCENT DYES; NUCLEOTIDES; SPECTROMETRY, FLUORESCENCE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; UMBELLIFERONES;

EID: 75649111953     PISSN: 14394227     EISSN: 14397633     Source Type: Journal    
DOI: 10.1002/cbic.200900632     Document Type: Article

References (22)

1. a) E. R. Mardis, Annu. Rev. Genomics Hum. Genet. 2008, 9, 387-402;
2. b) J. Shendure, H. Ji, Nat. Biotechnol. 2008, 26, 1135-1145;
3. c) D. R. Smith, A. R. Quinlan, H. E. Peckham, K. Makowsky, W. Tao, B. Woolf, L. Shen, W. F. Donanhue, N. Tusneem, M. P. Stromberg, D. A. Stewart, L. Zhang, S. S. Ranade, J. B. Warner, C. C. Lee, B. E. Coleman, Z. Zhang, S. T. McLaughlin, J. A. Malek, J. M. Sorenson, A. P. Blanchard, J. Chapman, D. Hillman, F. Chen, D. S. Rokhsar, K. J. McKernan, T. W. Jeffries, G. T. Marth, P. M. Richardson, Genome Res. 2008, 18, 1638-1642.
4. a) C. Shaffer, Nat. Biotechnol. 2007, 25, 149;
5. b) M. E. Hudson, Mol. Ecol. Resour. 2008, 8, 3-17;
6. c) M. Moore, A. Dhingra, P. Soltis, R. Shaw, W. Farmerie, K. Folta, D. Soltis, BMC Plant Biol. 2006, 6, 17;
7. S. C. Schuster, Nat. Methods 2008, 5, 16-18.
8. a) M. Ronaghi, M. Uhlen, P. Nyren, Science 1998, 281, 363-365;
9. b) I. Braslavsky, B. Hebert, E. Kartalov, S. R. Quake, Proc. Natl. Acad. Sci. USA 2003, 100, 3960-3964;
10. c) R. D. Mitra, J. Shendure, J. Olejnik, O. Edyta Krzymanska, G. M. Church, Anal. Biochem. 2003, 320, 55-65.
11. M. L. Metzker, Genome Res. 2005, 15, 1767-1776.
12. W. Wu, B. P. Stupi, V. A. Litosh, D. Mansouri, D. Farley, S. Morris, S. Metzker, M. L. Metzker, Nucleic Acids Res. 2007, 35, 6339-6349.
13. a) G. Turcatti, A. Romieu, M. Fedurco, A.-P. Tairi, Nucleic Acids Res. 2008, 36, e25;
14. b) B. Canard, R. S. Sarfati, Gene 1994, 148, 1-6;
15. M. B. Welch, C. I. Martinez, A. J. Zhang, S. Jin, R. Gibbs, K. Burgess, Chem. Eur. J. 1999, 5, 951-960.
16. S. Doublie, S. Tabor, A. Long, C. Richardson, T. Ellenberger, Nature 1998, 391, 251-258.
17. E. R. Mardis, Genome Biol. 2006, 7, 112.
18. J. Ludwig, F. J. Eckstein, Org. Chem. 1989, 54, 631-645.
19. Q. Meng, D.-H. Kim, X. Bai, L. Bi, N. J. Turro, J. Ju, J. Org. Chem. 2006, 71, 3248-3252.
20. a) J. Ju, D.-H. Kim, L. Bi, Q. Meng, X. Bai, Z. Li, X. Li, M. S. Marma, S. Shi, J. Wu, J. R. Edwards, A. Romu, N. J. Turro, Proc. Natl. Acad. Sci. USA 2006, 103, 19635-19640;
21. b) J. Wu, S. Zhang, Q. Meng, H. Cao, Z. Li, X. Li, S. Shi, D.-H. Kim, L. Bi, N. J. Turro, J. Ju, Proc. Natl. Acad. Sci. USA 2007, 104, 16462-16467.
22. H. Ruparel, L. Bi, Z. Li, X. Bai, D.-H. Kim, N. J. Turro, J. Ju, Proc. Natl. Acad. Sci. USA 2005, 102, 5932-5937.