TBP-associated factors in Arabidopsis

Gene

Volumn 342, Issue 2, 2004, Pages 231-241

  Lago, Clara ^a   Clerici, Elena ^a   Mizzi, Luca ^a   Colombo, Lucia ^a   Kater, Martin M ^a  

^a UNIVERSITY OF MILAN   (Italy)

Author keywords

Evolutionary conservation; TAF; TFIID complex; Transcription factors

Indexed keywords

TATA BINDING PROTEIN ASSOCIATED FACTOR;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; GENE EXPRESSION PROFILING; GENE LOCATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN STRUCTURE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHROMOSOMES, PLANT; CLONING, MOLECULAR; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENOME, PLANT; MULTIGENE FAMILY; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, PLANT; TATA-BINDING PROTEIN ASSOCIATED FACTORS;

ARABIDOPSIS;

EID: 7544233763     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.08.023     Document Type: Article

References (32)

1. S.R. Albright, and R. Tjian TAFs revisited: more data reveal new twists and confirm old ideas Gene 242 2000 1 13
2. S. Bagby, T.K. Mal, D. Liu, E. Raddatz, Y. Nakatani, and M. Ikura TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP FEBS Letters 468 2000 149 154
3. A. Bertolotti, Y. Lutz, D.J. Heard, P. Chambon, and L. Tora hTAF(II)68, a novel RNA/ssDNA-binding protein with homology to the pro-oncoproteins TLS/FUS and EWS is associated with both TFIID and RNA polymerase II EMBO J. 15 1996 5022 5031
4. M. Brand, C. Leurent, V. Mallouh, L. Tora, and P. Schultz Three-dimensional structures of the TAFII-containing complexes TFIID and TFTC Science 286 1999 2151 2153
5. B.R. Cairns, N.L. Henry, and R.D. Kornberg TFG3/TAF30/ANC1, a component of the yeast SWI/SNF complex that is similar to the leukemogenic proteins ENL and AF-9 Mol. Cell. Biol. 16 1996 3308 3316
6. R.J. Durso, A.K. Fisher, T.J. Albright-Frey, and J.C. Reese Analysis of TAF90 mutants displaying allele-specific and broad defects in transcription Mol. Cell. Biol. 21 2001 7331 7344
7. J. Felsenstein PHYLIP - Phylogeny Inference Package (Version 3.2) Cladistics 5 1989 164 166
8. Y.G. Gangloff, S. Werten, C. Romier, L. Carre, O. Poch, D. Moras, and I. Davidson The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs Mol. Cell. Biol. 20 2000 340 351
9. II47 containing a histone fold and a PHD finger Mol. Cell. Biol. 21 2001 5109 5121
10. Y.G. Gangloff, S.L. Sanders, C. Romier, D. Kirschner, P.A. Weil, L. Tora, and I. Davidson Histone folds mediate selective heterodimerization of yeast TAF(II)25 with TFIID components yTAF(II)47 and yTAF(II)65 and with SAGA component ySPT7 Mol. Cell. Biol. 21 2001 1841 1853
11. Y.G. Gangloff, C. Romier, S. Thuault, S. Werten, and I. Davidson The histone fold is a key structural motif of transcription factor TFIID Trends Biochem. Sci. 26 2001 250 257
12. II30 and are differentially regulated during development Mol. Cell. Biol. 20 2000 1639 1648
13. A. Hoffmann, C.M. Chiang, T. Oelgeschlager, X. Xie, S.K. Burley, Y. Nakatani, and R.G. Roeder A histone octamer-like structure within TFIID Nature 380 1996 356 359
14. F. Jeanmougin, J.D. Thompson, M. Gouy, D.G. Higgins, and T.J. Gibson Multiple sequence alignment with ClustalX Trends Biochem. Sci. 23 1998 403 405
15. J. Kirchner, S.L. Sanders, E. Klebanow, and P.A. Weil Molecular genetic dissection of TAF25, an essential yeast gene encoding a subunit shared by TFIID and SAGA multiprotein factors Mol. Cell. Biol. 21 2001 6668 6680
16. P.B. Komarnitsky, B. Michel, and S. Buratowski TFIID-specific yeast TAF40 is essential for the majority of RNA polymerase II-mediated transcription in vivo Genes Dev. 13 1999 2484 2489
17. C. Leurent, S. Sanders, C. Ruhlmann, V. Mallouh, P.A. Weil, D.B. Kirschner, L. Tora, and P. Schultz Mapping histone fold TAFs within yeast TFIID EMBO J. 21 2002 3424 3433
18. C. Leurent, S.L. Sanders, M.A. Demeny, K.A. Garbett, C. Ruhlmann, P.A. Weil, L. Tora, and P. Schultz Mapping key functional sites within yeast TFIID EMBO J. 23 2004 719 727
19. T.K. Mal, Y. Masutomi, L. Zheng, Y. Nakata, H. Ohta, Y. Nakatani, T. Kokubo, and M. Ikura Structural and functional characterization on the interaction of yeast TFIID subunit TAF1 with TATA-binding protein J. Mol. Biol. 339 2004 681 693
20. R. Pandey, A. Müller, C.A. Napoli, D.A. Selinger, C.S. Pikaard, E.J. Richards, J. Bender, D.W. Mount, and R.A. Jorgensen Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes Nucleic Acids Res. 30 2002 5036 5055
21. L. Parenicova, S. de Folter, M. Kieffer, D.S. Horner, C. Favalli, J. Busscher, H.E. Cook, R.M. Ingram, M.M. Kater, B. Davies, G.C. Angenent, and L. Colombo Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world Plant Cell. 15 2003 1538 1551
22. L.A. Pereira, M.P. Klejman, and H.T. Timmers Roles for BTAF1 and Mot1p in dynamics of TATA-binding protein and regulation of RNA polymerase II transcription Gene 315 2003 1 13
23. S.L. Sanders, J. Jenning, A. Canutescu, A.J. Link, and P.A. Weil Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry Mol. Cell. Biol. 22 2002 4723 4738
24. T.F. Smith, C. Gaitatzes, K. Saxena, and E.J. Neer The WD40 repeat: a common architecture for diverse functions Trends Biochem. Sci. 24 1999 181 185
25. The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature 408 2000 796 815
26. S. Thuault, Y.G. Gangloff, J. Kirchner, S. Sanders, S. Werten, C. Romier, P.A. Weil, and I. Davidson Functional analysis of the TFIID-specific yeast TAF4 (yTAF(II)48) reveals an unexpected organization of its histone-fold domain J. Biol. Chem. 277 2002 45510 45517
27. L. Tora A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription Genes Dev. 16 2002 673 675
28. II170 subunit of transcription factor B-TFIID reveals homology to global transcription regulators in yeast and Drosophila Proc. Natl. Acad. Sci. U. S. A. 94 1997 11827 11832
29. K.B. Washburn, E.A. Davis, and S. Ackerman Coactivators and TAFs of transcription activation in wheat Plant Mol. Biol. 35 1997 1037 1043
30. D.A. Wassarman, and F. Sauer TAFII250: a transcription toolbox J. Cell. Sci. 114 2001 2895 2902
31. X. Xie, T. Kokubo, S.L. Cohen, U.A. Mirza, A. Hoffmann, B.T. Chait, R.G. Roeder, Y. Nakatani, and S.K. Burley Structural similarity between TAFs and the heterotetrameric core of the histone octamer Nature 380 1996 316 322
32. G. Yatherajam, L. Zhang, S.M. Kraemer, and L.A. Stargell Protein-protein interaction map for yeast TFIID Nucleic Acids Res. 31 2003 1252 1260