Comparison of the multiple oligomeric structures observed for the Rvb1 and Rvb2 proteins

Biochemistry and Cell Biology

Volumn 88, Issue 1, 2010, Pages 77-88

  Cheung, Kevin L Y ^a   Huen, Jennifer ^b   Houry, Walid A ^b   Ortega, Joaquin ^a  

^a MCMASTER UNIVERSITY   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

Author keywords

AAA+; Pontin; Reptin; Rvb1; Rvb2

Indexed keywords

APOPTOSIS; CELLULAR ACTIVITIES; CELLULAR TRANSFORMATION; CHROMATIN REMODELING; COMPARATIVE ANALYSIS; NUCLEOLAR RNA; OLIGOMERIC STRUCTURE; PROTEIN STRUCTURES; STRUCTURAL STUDIES;

CELL DEATH; RNA;

PROTEINS;

CELL PROTEIN; OLIGOMER; RVB1 PROTEIN; RVB2 PROTEIN; SMALL NUCLEOLAR RNA; UNCLASSIFIED DRUG;

APOPTOSIS; CELL ACTIVITY; CELL TRANSFORMATION; CHROMATIN ASSEMBLY AND DISASSEMBLY; COMPLEX FORMATION; CONFERENCE PAPER; CRYOELECTRON MICROSCOPY; CRYSTAL STRUCTURE; ELECTRON MICROSCOPY; MACROMOLECULE; NONHUMAN; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; X RAY CRYSTALLOGRAPHY;

ADENOSINE TRIPHOSPHATASES; CARRIER PROTEINS; DNA HELICASES; HUMANS; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS;

EID: 75349085062     PISSN: 08298211     EISSN: 12086002     Source Type: Journal    
DOI: 10.1139/O09-159     Document Type: Conference Paper

References (36)

1. Bakshi, R., Mehta, A.K., Sharma, R., Maiti, S., Pasha, S., and Brahmachari, V. 2006. Characterization of a human SWI2/SNF2 like protein hINO80: demonstration of catalytic and DNA binding activity. Biochem. Biophys. Res. Commun. 339(1): 313-320. doi:10.1016/j.bbrc.2005.10.206. PMID:16298340.
2. Bauer, A., Chauvet, S., Huber, O., Usseglio, F., Rothbächer, U., Aragnol, D., et al. 2000. Pontin52 and reptin52 function as antagonistic regulators of beta-catenin signalling activity. EMBO J. 19(22): 6121-6130. doi:10.1093/emboj/19.22.6121. PMID: 11080158.
3. Davey, M.J., Indiani, C., and O'Donnell, M. 2003. Reconstitution of the Mcm2-7p heterohexamer, subunit arrangement, and ATP site architecture. J. Biol. Chem. 278(7): 4491-4499. doi:10. 1074/jbc.M210511200. PMID:12480933.
4. Fletcher, R.J., Bishop, B.E., Leon, R.P., Sclafani, R.A., Ogata, C.M., and Chen, X.S. 2003. The structure and function of MCM from archaeal M. Thermoautotrophicum. Nat. Struct. Biol. 10(3): 160-167. doi:10.1038/nsb893. PMID:12548282.
5. Fuchs, M., Gerber, J., Drapkin, R., Sif, S., Ikura, T., Ogryzko, V., et al. 2001. The p400 complex is an essential E1A transformation target. Cell, 106(3): 297-307. doi:10.1016/S0092-8674(01) 00450-0. PMID:11509179.
6. Gartner, W., Rossbacher, J., Zierhut, B., Daneva, T., Base, W., Weissel, M., et al. 2003. The ATP-dependent helicase RUVBL1/TIP49a associates with tubulin during mitosis. Cell Motil. Cytoskeleton, 56(2): 79-93. doi:10.1002/cm.10136. PMID:14506706.
7. Gribun, A., Cheung, K.L., Huen, J., Ortega, J., and Houry, W.A. 2008. Yeast Rvb1 and Rvb2 are ATP-dependent DNA helicases that form a heterohexameric complex. J. Mol. Biol. 376(5): 1320-1333. doi:10.1016/j.jmb.2007.12.049. PMID:18234224.
8. Hanson, P.I., and Whiteheart, S.W. 2005. AAA+ proteins: have engine, will work. Nat. Rev. Mol. Cell Biol. 6(7): 519-529. doi:10. 1038/nrm1684. PMID:16072036.
9. Huen, J., Kakihara, Y., Ugwu, F., Cheung, K., Ortega, J., and Houry, W.A. 2010. Rvb1/2: essential ATP-dependent hilcases for critical complexes. Biochem. Cell. Biol. 88: this issue.
10. Ikura, T., Ogryzko, V.V., Grigoriev, M., Groisman, R., Wang, J., Horikoshi, M., et al. 2000. Involvement of the TIP60 histone acetylase complex in DNA repair and apoptosis. Cell, 102(4): 463-473. doi:10.1016/S0092- 8674(00)00051-9. PMID: 10966108.
11. Jin, J., Cai, Y., Yao, T., Gottschalk, A.J., Florens, L., Swanson, S.K., et al. 2005. A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex. J. Biol. Chem. 280(50): 41207-41212. doi:10.1074/jbc.M509128200. PMID: 16230350.
12. Johnson, A., and O'Donnell, M. 2003. Ordered ATP hydrolysis in the gamma complex clamp loader AAA+ machine. J. Biol. Chem. 278(16): 14406-14413. doi:10.1074/jbc.M212708200. PMID:12582167.
13. Karata, K., Inagawa, T., Wilkinson, A.J., Tatsuta, T., and Ogura, T. 1999. Dissecting the role of a conserved motif (the second region of homology) in the AAA family of ATPases. Site-directed mutagenesis of the ATP-dependent protease FtsH. J. Biol. Chem. 274(37): 26225-26232. doi:10.1074/jbc.274. 37.26225. PMID:10473576.
14. King, T.H., Decatur, W.A., Bertrand, E., Maxwell, E.S., and Fournier, M.J. 2001. A well-connected and conserved nucleoplasmic helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins. Mol. Cell. Biol. 21(22): 7731-7746. doi:10.1128/MCB.21.22.7731-7746.2001. PMID:11604509.
15. Krogan, N.J., Keogh, M.C., Datta, N., Sawa, C., Ryan, O.W., Ding, H., et al. 2003. A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Mol. Cell, 12(6): 1565-1576. doi:10.1016/S1097-2765(03) 00497-0. PMID: 14690608.
16. Lenzen, C.U., Steinmann, D., Whiteheart, S.W., and Weis, W.I. 1998. Crystal structure of the hexamerization domain of Nethylmaleimide-sensitive fusion protein. Cell, 94(4): 525-536. doi:10.1016/S0092-8674(00)81593-7. PMID:9727495.
17. Li, D., Zhao, R., Lilyestrom, W., Gai, D., Zhang, R., DeCaprio, J.A., et al. 2003. Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen. Nature, 423(6939): 512-518. doi:10.1038/nature01691. PMID:12774115.
18. Lupas, A.N., and Martin, J. 2002. AAA proteins. Curr. Opin. Struct. Biol. 12(6): 746-753. doi:10.1016/S0959-440X(02) 00388-3. PMID:12504679.
19. Matias, P.M., Gorynia, S., Donner, P., and Carrondo, M.A. 2006. Crystal structure of the human AAA+ protein RuvBL1. J. Biol. Chem. 281(50): 38918-38929. doi:10.1074/jbc.M605625200. PMID:17060327.
20. Mizuguchi, G., Shen, X., Landry, J., Wu, W.H., Sen, S., and Wu, C. 2004. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science, 303(5656): 343-348. doi:10.1126/science. 1090701. PMID: 14645854.
21. Neuwald, A.F., Aravind, L., Spouge, J.L., and Koonin, E.V. 1999. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res. 9(1): 27-43. PMID:9927482.
22. Newman, D.R., Kuhn, J.F., Shanab, G.M., and Maxwell, E.S. 2000. Box C/D snoRNA-associated proteins: two pairs of evolutionarily ancient proteins and possible links to replication and transcription. RNA, 6(6): 861-879. doi:10.1017/S1355838200992446. PMID:10864044.
23. Ogura, T., and Wilkinson, A.J. 2001. AAA+ superfamily ATPases: common structure-diverse function. Genes Cells, 6(7): 575-597. doi:10.1046/j.1365-2443.2001.00447.x. PMID:11473577.
24. Puri, T., Wendler, P., Sigala, B., Saibil, H., and Tsaneva, I.R. 2007. Dodecameric structure and ATPase activity of the human TIP48/TIP49 complex. J. Mol. Biol. 366(1): 179-192. doi:10.1016/j. jmb.2006.11.030. PMID:17157868.
25. Putnam, C.D., Clancy, S.B., Tsuruta, H., Gonzalez, S., Wetmur, J.G., and Tainer, J.A. 2001. Structure and mechanism of the RuvB Holliday junction branch migration motor. J. Mol. Biol. 311(2): 297-310. doi:10.1006/jmbi.2001. 4852. PMID:11478862.
26. Qiu, X.B., Lin, Y.L., Thome, K.C., Pian, P., Schlegel, B.P., Weremowicz, S., et al. 1998. An eukaryotic RuvB-like protein (RUVBL1) essential for growth. J. Biol. Chem. 273(43): 27786-27793. doi:10.1074/jbc.273.43.27786. PMID:9774387.
27. Rombel, I., Peters-Wendisch, P., Mesecar, A., Thorgeirsson, T., Shin, Y.K., and Kustu, S. 1999. MgATP binding and hydrolysis determinants of NtrC, a bacterial enhancer-binding protein. J. Bacteriol. 181(15): 4628-4638. PMID:10419963.
28. Rossmann, M.G. 2000. Fitting atomic models into electron-microscopy maps. Acta Crystallogr. D Biol. Crystallogr. 56(Pt 10): 1341-1349. doi:10.1107/S0907444900009562. PMID:10998631.
29. Rossmann, M.G., Morais, M.C., Leiman, P.G., and Zhang, W. 2005. Combining X-ray crystallography and electron microscopy. Structure, 13(3): 355-362. doi:10.1016/j.str.2005.01.005. PMID:15766536.
30. Shen, X., Mizuguchi, G., Hamiche, A., and Wu, C. 2000. A chromatin remodelling complex involved in transcription and DNA processing. Nature, 406(6795): 541-544. doi:10.1038/35020123. PMID:10952318.
31. Singleton, M.R., Sawaya, M.R., Ellenberger, T., and Wigley, D.B. 2000. Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides. Cell, 101(6): 589-600. doi:10.1016/S0092-8674(00)80871-5. PMID: 10892646.
32. Snider, J., and Houry, W.A. 2008. AAA+ proteins: diversity in function, similarity in structure. Biochem. Soc. Trans. 36(Pt 1): 72-77. doi:10.1042/BST0360072. PMID:18208389.
33. Snider, J., Thibault, G., and Houry, W.A. 2008. The AAA+ superfamily of functionally diverse proteins. Genome Biol. 9(4): 216. doi:10.1186/gb-2008-9-4-216. PMID:18466635.
34. Torreira, E., Jha, S., López-Blanco, J.R., Arias-Palomo, E., Chacón, P., Cañas, C., et al. 2008. Architecture of the pontin/reptin complex, essential in the assembly of several macromolecular complexes. Structure, 16(10): 1511-1520. doi:10.1016/j.str.2008.08. 009. PMID:18940606.
35. Wood, M.A., McMahon, S.B., and Cole, M.D. 2000. An ATPase/helicase complex is an essential cofactor for oncogenic transformation by c-Myc. Mol. Cell, 5(2): 321-330. doi:10.1016/S1097-2765(00)80427-X. PMID:10882073.
36. Zhao, R., Kakihara, Y., Gribun, A., Huen, J., Yang, G., Khanna, M., et al. 2008. Molecular chaperone Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex activity that regulates snoRNA accumulation. J. Cell Biol. 180(3): 563-578. doi:10. 1083/jcb.200709061. PMID:18268103.