A modeling and simulation study of siderophore mediated antagonism in dual-species biofilms

Theoretical Biology and Medical Modelling

Volumn 6, Issue 1, 2009, Pages

  Eberl, Hermann J ^a   Collinson, Shannon ^b  

^a UNIVERSITY OF GUELPH   (Canada)

^b YORK UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA;

CHELATING AGENT; SIDEROPHORE;

ARTICLE; BACTERIAL COUNT; BACTERIUM ADHERENCE; BIOFILM; BIOLOGICAL MODEL; BIOMASS; COMPUTER SIMULATION; CYTOLOGY; DIFFUSION; DRUG EFFECT; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PHYSIOLOGY; PSEUDOMONAS; SPECIES DIFFERENCE;

BACTERIAL ADHESION; BIOFILMS; BIOMASS; CHELATING AGENTS; COLONY COUNT, MICROBIAL; COMPUTER SIMULATION; DIFFUSION; MODELS, BIOLOGICAL; PSEUDOMONAS; SIDEROPHORES; SPECIES SPECIFICITY;

EID: 75149184182     PISSN: None     EISSN: 17424682     Source Type: Journal    
DOI: 10.1186/1742-4682-6-30     Document Type: Article

References (44)

1. Bacterial iron homeostasis. SC Andrews AK Robinson F Rodriguez-Quinones, FEMS Microbiology Reviews 2003 27 215 237 10.1016/S0168-6445(03)00055-X 12829269
2. Antagonism between Bacillus cereus and Pseudomonas fluorescens in planktonic systems and in biofilms. M Simoes LC Simoes MO Pereira MJ Viera, Biofouling 2008 24 5 339 349 10.1080/08927010802239154 18576180
3. Enhanced plant growth by siderophores produced by plant growth-promoting bacteria. JW Kloepper J Leong M Teintz MN Schroth, Nature 1980 286 885 886 10.1038/286885a0
4. Siderophores in microbial interactions on plant surfaces. JE Loper JS Buyer, Molec Plant-Microbe Interactions 1991 4 1 5 13
5. Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. DJ O'Sullivan F O'Gara, Microbiol Reviews 1992 56 4 662 676
6. Identification of Pseudomonas fluorescens strains isolated from raw pork and chicken that produce siderophores antagonistic towards foodborne pathogens. C-M Chen MP Doyle JB Luchansky, J Food Protection 1995 58 12 1340 1345
7. Antagonism of foodborne bacteria by Pseudomonas spp.: a possible role for iron. DJ Freedman JK Kondo DL Willrett, J. Food Protection 1989 52 7 484 489
8. Inhibitory effect against pathogenic and spoilage bacteria of Pseudomonas strains isolated from spoiled and fresh fish. L Gram, Appl Env Microbiol 1993 59 7 2197 2203
9. Interaction betwee fish spoilage bacteria Pseudomonsas sp. and Shewanella putrefaciens in fish extracts and on fish tissue. L Gram J Melchiorsen, J Appl Bacteriol 1996 80 589 595 8698659
10. Food spoilage - interactions between food spoilage bacteria. L Gram L Ravn M Rasch JB Bruhn AB Christensen M Giskov, Int J Food Microbiol 2002 78 79 97 10.1016/S0168-1605(02)00233-7 12222639
11. Iron and Pseudomonas aeruginosa biofilm formation. E Banin ML Vasil EP Greenberg, PNAS 2005 102 31 11076 11081 10.1073/pnas.0504266102 16043697
12. Ironing out the biofilm problem. EP Greenberg E Banin, Control of Biofilm Infections by Signal Manipulation Springer, Berlin-Heidelberg, Balaban N, 2008
13. Pyoverdine siderphores: from biogenesis to biosignificance. P Visca F Imperi L Lamont, Trends in Microbiology 2006 15 1 22 30 10.1016/j.tim.2006.11. 004 17118662
14. Diffusion in biofilms. PS Stewart, J Bacteriol 2003 185 5 1485 1491 10.1128/JB.185.5.1485-1491.2003 12591863
15. Biofilm formation and control in food processing facilities. RAN Chmielewski JF Frank, Compr Revs Food Sc and Food Saf 2003 2 22 32 10.1111/j.1541-4337.2003.tb00012.x
16. An outbreak of multidrug-resistant Pseudomonas aeruginosa colonization and infection secondary to imperfect intensive care unit room design. S Hota Z Hirji K Stockton C Lemieux H Dedier GM Wolfaardt M Gardam, Infect Control Hosp Epidemiol 2009 30 25 33 10.1086/592700 19046054
17. Biofouling in food processing: Biofilm or biotransfer potential? J Verran, Trans. IChemE 2002 80 C 292 298
18. Bacterial Biofilms: A Common Cause of Persistent Infections. JW Costerton PS Stewart EP Greenberg, Science 1999 241 1318 1322 10.1126/science.284.5418. 1318 (Pubitemid 29289651)
19. Modelling antibiotic- and quorum sensing treatment of a spatially-structured Pseudomonas aeruginosa population. K Anguige JR King JP Ward, J Math Biol 2005 51 557 594 10.1007/s00285-005-0316-8 16012802
20. O Wanner H Eberl E Morgenroth D Noguera C Picioreanu B Rittmann M van Loosdrecht (IWA Task Group on Biofilm Modeling), Mathematical modeling of biofilms IWAPublishing, London 2006
21. Mathematical description of microbial biofilms. I Klapper J Dockery, SIAM Review, to appear, electronic preprint http://www.math.montana.edu/klapper/ home/PSman/review4.pdf
22. Predictive modeling of siderphore production by Pseudomonas fluorescens under iron limitation. H Fgaier B Feher RC McKellar HJ Eberl, J Theoretical Biology 2008 251 2 348 362 10.1016/j.jtbi.2007.11.026
23. Parameter identification and quantitative comparison of differential equations that describe physiological adaptation of a bacterial population under iron limitation. H Fgaier HJ Eberl, DCDS Supplements 2009 2009 230 239
24. Time-discretisation of a degenerate reaction-diffusion equation arising in biofilm modeling. A Duvnjak HJ Eberl, El Trans Num Analysis 2006 23 15 38
25. A new deterministic spatio-temporal continuum model for biofilm development. HJ Eberl DF Parker MCM van Loosdrecht, J Theor Medicine 2001 3 3 161 175
26. Exposure of biofilms to slow flow fields: the convective contribution to growth and disinfections. HJ Eberl R Sudarsan, J Theor Biol 2008 253 4 788 807 10.1016/j.jtbi.2008.04.013 18547590
27. On the structure of attractors for a class of degenerate reaction-diffusion systems. MA Efendiev L L Demaret, Adv Math Sci & Appls 2008 18 105 118
28. Existence and longtime behavior of solutions of a nonlinear reaction-diffusion system arising in the modeling of biofilms. MA Efendiev HJ Eberl SV Zelik, RIMS Kokyuroko 2002 1258 49 71
29. Existence and longtime behavior of a biofilm model. MA Efendiev SV Zelik HJ Eberl, Comm Pure Appl Analysis 2009 8 2 509 531 10.3934/cpaa.2009.8.509
30. A diffusion-reaction model of a mixed culture biofilm arising in food safety studies. HJ Eberl H Schraft, Mathematical modeling of biological system, Birkhäuser, Deutsch A, et al, 2007 II 109 120
31. A mixed-culture model of a probiotic biofilm control system. HJ Eberl H Khassehkhan L Demaret, Comp. Math. Meth. Med., accepted, electronic preprint http://www.informaworld.com/smpp/content content=a915661754 db=all jumptype=rss
32. A degenerate diffusion-reaction model of an amensalistic probiotic biofilm control system: Existence and simulation of solutions. H Khassehkhan MA Efendiev HJ Eberl, Discr Cont Dyn Sys B 2009 12 2 371 388
33. A Competition Model Between Pseudomonas fluorescens and Pathogens Via Iron Chelation. H Fgaier HJ Eberl, J Theor Biol 2008 18191154
34. A nonlinear master equation for a degenerate diffusion model of biofilm growth. H Khassehkhan T Hillen HJ Eberl, LNCS 2009 5544 735 744
35. Analysis and simulation of a meso-scale model of diffusive resistance of bacterial biofilms to penetration of antibiotics. L Demaret HJ Eberl MA Efendiev R Lasser, Adv Math Sci Appls 2008 18 269 304
36. A new combined differential-discrete cellular automaton approach for biofilm modeling: Application for growth in gel beads. C Picioreanu MCM van Loosdrecht JJ Heijnen, Biotech Bioeng 1998 57 6 718 731 10.1002/(SICI)1097- 0290(19980320)57:6<718::AID-BIT93.0.CO;2-O
37. Quantitative cellular automaton model for biofilms. G Pizarro D Griffeath D Noguera, J Env Eng 2001 127 9 782 789 10.1061/(ASCE)0733-9372(2001)127:9(782) (Pubitemid 32818662)
38. Bitwise implementation of a 2D cellular automata biofilm model. GE Pizarro J Texiera M Sepulveda DR Noguera, J Comp Civ Eng 2005 19 3 258 268 10.1061/(ASCE)0887-3801(2005)19:3(258) (Pubitemid 41092938)
39. Finger formation in biofilm layers. J Dockery I Klapper, SIAM J Appl Math 2002 62 853 869 10.1137/S0036139900371709 (Pubitemid 34750572)
40. Computing Intensive Simulations in Biofilm Modeling. HJ Eberl N Muhammad R Sudarsan, Proc. 22nd Int. High Performance Computing Symposium (HPCS2008), Quebec City, IEEE Conference Series 2008 132 138
41. OpenMP Parallelization of a Mickens Time-Integration Scheme For a Mixed-Culture Biofilm Model and its Performance on Multi-core and Multi-processor Computers. N Muhammad HJ Eberl, LNCS 2010
42. Modeling and simulation of a bacterial biofilm that is controlled by pH and protonated lactic acids. H Khassehkhan HJ Eberl, Comp Math Meth Med 2008 9 1 47 67 10.1080/17486700701797922 (Pubitemid 351167307)
43. A finite difference scheme for a degenerated diffusion equation arising in microbial ecology. HJ Eberl L Demaret, El J Diff Equs CS 2007 15 77 95
44. Two-fluid model of biofilm disinfection. NG Cogan, Bull Math Biol 2008 70 3 800 819 10.1007/s11538-007-9280-3 18071827