메뉴 건너뛰기




Volumn 11, Issue SUPPLL.1, 2010, Pages

Computational prediction of type III secreted proteins from gram-negative bacteria

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID COMPOSITIONS; COMPUTATIONAL APPROACH; COMPUTATIONAL PREDICTIONS; GRAM-NEGATIVE BACTERIA; MACHINE LEARNING METHODS; N-TERMINAL AMINO ACID SEQUENCE; PROTEIN DELIVERY SYSTEMS; TYPE III SECRETION SYSTEM;

EID: 75149124497     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-S1-S47     Document Type: Article
Times cited : (63)

References (30)
  • 1
    • 8844275498 scopus 로고    scopus 로고
    • Type III protein secretion mechanism in mammalian and plant pathogens
    • He SY, Nomura K, Whittam TS. Type III protein secretion mechanism in mammalian and plant pathogens. BBA-Molecular Cell Research 2004, 1694(1-3):181-206.
    • (2004) BBA-Molecular Cell Research , vol.1694 , Issue.1-3 , pp. 181-206
    • He, S.Y.1    Nomura, K.2    Whittam, T.S.3
  • 2
    • 33750110911 scopus 로고    scopus 로고
    • The type III secretion injectisome
    • 10.1038/nrmicro1526, 17041629
    • Cornelis GR. The type III secretion injectisome. Nature Reviews Microbiology 2006, 4(11):811-825. 10.1038/nrmicro1526, 17041629.
    • (2006) Nature Reviews Microbiology , vol.4 , Issue.11 , pp. 811-825
    • Cornelis, G.R.1
  • 3
    • 0031746607 scopus 로고    scopus 로고
    • Symbiotic implications of type III protein secretion machinery in Rhizobium
    • 10.1046/j.1365-2958.1998.00920.x, 9680225
    • Viprey V, Del Greco A, Golinowski W, Broughton WJ, Perret X. Symbiotic implications of type III protein secretion machinery in Rhizobium. Molecular Microbiology 1998, 28(6):1381-1389. 10.1046/j.1365-2958.1998.00920.x, 9680225.
    • (1998) Molecular Microbiology , vol.28 , Issue.6 , pp. 1381-1389
    • Viprey, V.1    Del Greco, A.2    Golinowski, W.3    Broughton, W.J.4    Perret, X.5
  • 4
    • 48049108686 scopus 로고    scopus 로고
    • Evolution of prokaryotic and eukaryotic virulence effectors
    • 10.1016/j.pbi.2008.05.001, 18585954
    • Ma W, Guttman DS. Evolution of prokaryotic and eukaryotic virulence effectors. Current Opinion in Plant Biology 2008, 11(4):412-419. 10.1016/j.pbi.2008.05.001, 18585954.
    • (2008) Current Opinion in Plant Biology , vol.11 , Issue.4 , pp. 412-419
    • Ma, W.1    Guttman, D.S.2
  • 5
    • 0036500995 scopus 로고    scopus 로고
    • A functional screen for the type III (Hrp) secretome of the plant pathogen Pseudomonas syringae
    • 10.1126/science.295.5560.1722, 11872842
    • Guttman DS, Vinatzer BA, Sarkar SF, Ranall MV, Kettler G, Greenberg JT. A functional screen for the type III (Hrp) secretome of the plant pathogen Pseudomonas syringae. Science 2002, 295(5560):1722-1726. 10.1126/science.295.5560.1722, 11872842.
    • (2002) Science , vol.295 , Issue.5560 , pp. 1722-1726
    • Guttman, D.S.1    Vinatzer, B.A.2    Sarkar, S.F.3    Ranall, M.V.4    Kettler, G.5    Greenberg, J.T.6
  • 7
    • 23044485038 scopus 로고    scopus 로고
    • Bioinformatics correctly identifies many type III secretion substrates in the plant pathogen Pseudomonas syringae and the biocontrol isolate P. fluorescens SBW25
    • 10.1094/MPMI-18-0877, 16134900
    • Vinatzer BA, Jelenska J, Greenberg JT. Bioinformatics correctly identifies many type III secretion substrates in the plant pathogen Pseudomonas syringae and the biocontrol isolate P. fluorescens SBW25. Molecular Plant-Microbe Interactions 2005, 18(8):877-888. 10.1094/MPMI-18-0877, 16134900.
    • (2005) Molecular Plant-Microbe Interactions , vol.18 , Issue.8 , pp. 877-888
    • Vinatzer, B.A.1    Jelenska, J.2    Greenberg, J.T.3
  • 8
    • 33750209028 scopus 로고    scopus 로고
    • Multiple approaches to a complete inventory of Pseudomonas syringae pv. tomato DC3000 type III secretion system effector proteins
    • 10.1094/MPMI-19-1180, 17073301
    • Schechter LM, Vencato M, Jordan KL, Schneider SE, Schneider DJ, Collmer A. Multiple approaches to a complete inventory of Pseudomonas syringae pv. tomato DC3000 type III secretion system effector proteins. Molecular Plant-Microbe Interactions 2006, 19(11):1180-1192. 10.1094/MPMI-19-1180, 17073301.
    • (2006) Molecular Plant-Microbe Interactions , vol.19 , Issue.11 , pp. 1180-1192
    • Schechter, L.M.1    Vencato, M.2    Jordan, K.L.3    Schneider, S.E.4    Schneider, D.J.5    Collmer, A.6
  • 11
    • 0034090630 scopus 로고    scopus 로고
    • The gene coding for the Hrp pilus structural protein is required for type III secretion of Hrp and Avr proteins in Pseudomonas syringae pv. tomato
    • Wei W, Plovanich-Jones A, Deng WL, Jin QL, Collmer A, Huang HC, He SY. The gene coding for the Hrp pilus structural protein is required for type III secretion of Hrp and Avr proteins in Pseudomonas syringae pv. tomato. Proceedings of the National Academy of Sciences 2000, 97(5):2247-2252.
    • (2000) Proceedings of the National Academy of Sciences , vol.97 , Issue.5 , pp. 2247-2252
    • Wei, W.1    Plovanich-Jones, A.2    Deng, W.L.3    Jin, Q.L.4    Collmer, A.5    Huang, H.C.6    He, S.Y.7
  • 13
    • 0037062493 scopus 로고    scopus 로고
    • Direct biochemical evidence for type III secretion-dependent translocation of the AvrBs2 effector protein into plant cells
    • Casper-Lindley C, Dahlbeck D, Clark ET, Staskawicz BJ. Direct biochemical evidence for type III secretion-dependent translocation of the AvrBs2 effector protein into plant cells. Proceedings of the National Academy of Sciences 2002, 99(12):8336.
    • (2002) Proceedings of the National Academy of Sciences , vol.99 , Issue.12 , pp. 8336
    • Casper-Lindley, C.1    Dahlbeck, D.2    Clark, E.T.3    Staskawicz, B.J.4
  • 15
    • 0347915662 scopus 로고    scopus 로고
    • Pseudomonas syringae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter
    • 10.1128/JB.186.2.543-555.2004, 305754, 14702323
    • Schechter LM, Roberts KA, Jamir Y, Alfano JR, Collmer A. Pseudomonas syringae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter. Journal of bacteriology 2004, 186(2):543-555. 10.1128/JB.186.2.543-555.2004, 305754, 14702323.
    • (2004) Journal of bacteriology , vol.186 , Issue.2 , pp. 543-555
    • Schechter, L.M.1    Roberts, K.A.2    Jamir, Y.3    Alfano, J.R.4    Collmer, A.5
  • 17
    • 36949013631 scopus 로고    scopus 로고
    • Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs
    • 10.1093/bioinformatics/btm527, 17989092
    • Shamim MTA, Anwaruddin M, Nagarajaram HA. Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs. Bioinformatics 2007, 23(24):3320. 10.1093/bioinformatics/btm527, 17989092.
    • (2007) Bioinformatics , vol.23 , Issue.24 , pp. 3320
    • Shamim, M.T.A.1    Anwaruddin, M.2    Nagarajaram, H.A.3
  • 20
    • 4143052422 scopus 로고    scopus 로고
    • TtsI, a key regulator of Rhizobium species NGR234 is required for type III-dependent protein secretion and synthesis of rhamnose-rich polysaccharides
    • 10.1094/MPMI.2004.17.9.958, 15384486
    • Marie C, Deakin WJ, Ojanen-Reuhs T, Diallo E, Reuhs B, Broughton WJ, Perret X. TtsI, a key regulator of Rhizobium species NGR234 is required for type III-dependent protein secretion and synthesis of rhamnose-rich polysaccharides. Molecular Plant-Microbe Interactions 2004, 17(9):958-966. 10.1094/MPMI.2004.17.9.958, 15384486.
    • (2004) Molecular Plant-Microbe Interactions , vol.17 , Issue.9 , pp. 958-966
    • Marie, C.1    Deakin, W.J.2    Ojanen-Reuhs, T.3    Diallo, E.4    Reuhs, B.5    Broughton, W.J.6    Perret, X.7
  • 21
    • 49449116793 scopus 로고    scopus 로고
    • Expression of the Bradyrhizobium japonicum type III secretion system in legume nodules and analysis of the associated tts box promoter
    • 10.1094/MPMI-21-8-1087, 18616405
    • Zehner S, Schober G, Wenzel M, Lang K, Gottfert M. Expression of the Bradyrhizobium japonicum type III secretion system in legume nodules and analysis of the associated tts box promoter. Molecular Plant-Microbe Interactions 2008, 21(8):1087-1093. 10.1094/MPMI-21-8-1087, 18616405.
    • (2008) Molecular Plant-Microbe Interactions , vol.21 , Issue.8 , pp. 1087-1093
    • Zehner, S.1    Schober, G.2    Wenzel, M.3    Lang, K.4    Gottfert, M.5
  • 22
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • 10.1093/bioinformatics/14.9.755, 9918945
    • Eddy SR. Profile hidden Markov models. Bioinformatics 1998, 14(9):755-763. 10.1093/bioinformatics/14.9.755, 9918945.
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 755-763
    • Eddy, S.R.1
  • 23
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • 10.1093/bioinformatics/16.4.404, 10869041
    • McGuffin LJ, Bryson K, Jones DT. The PSIPRED protein structure prediction server. Bioinformatics 2000, 16(4):404-405. 10.1093/bioinformatics/16.4.404, 10869041.
    • (2000) Bioinformatics , vol.16 , Issue.4 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 24
    • 23144465987 scopus 로고    scopus 로고
    • SCRATCH: a protein structure and structural feature prediction server
    • W,Web Server, 10.1093/nar/gki396, 1160157, 15980571
    • Cheng J, Randall AZ, Sweredoski MJ, Baldi P. SCRATCH: a protein structure and structural feature prediction server. Nucleic Acids Research 2005, (33 Web Server):W72. 10.1093/nar/gki396, 1160157, 15980571.
    • (2005) Nucleic Acids Research , Issue.33 , pp. 72
    • Cheng, J.1    Randall, A.Z.2    Sweredoski, M.J.3    Baldi, P.4
  • 27
    • 67650151451 scopus 로고    scopus 로고
    • Prediction of Type III Secretion Signals in Genomes of Gram-Negative Bacteria
    • Löwer M, Schneider G. Prediction of Type III Secretion Signals in Genomes of Gram-Negative Bacteria. PloS one 2009, 4(6).
    • (2009) PloS one , vol.4 , Issue.6
    • Löwer, M.1    Schneider, G.2
  • 30
    • 66149084890 scopus 로고    scopus 로고
    • Characterization of the Mesorhizobium loti MAFF303099 Type-Three Protein Secretion System
    • 10.1094/MPMI-22-5-0519, 19348570
    • Sanchez C, Iannino F, Deakin W, Ugalde R, Lepek V. Characterization of the Mesorhizobium loti MAFF303099 Type-Three Protein Secretion System. Molecular Plant-Microbe Interactions 2009, 22(5):519-528. 10.1094/MPMI-22-5-0519, 19348570.
    • (2009) Molecular Plant-Microbe Interactions , vol.22 , Issue.5 , pp. 519-528
    • Sanchez, C.1    Iannino, F.2    Deakin, W.3    Ugalde, R.4    Lepek, V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.