-
1
-
-
0034923502
-
DNA topoisomerases: structure, function, and mechanism
-
Champoux, J.J. (2001) DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem., 70, 369-413.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
2
-
-
0036085460
-
Cellular roles of DNA topoisomerases: a molecular perspective
-
Wang, J.C. (2002) Cellular roles of DNA topoisomerases: a molecular perspective. Nat. Rev. Mol. Cell Biol., 3, 430-440.
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, pp. 430-440
-
-
Wang, J.C.1
-
3
-
-
33749034730
-
Topoisomerase I inhibitors: camptothecins and beyond
-
Pommier, Y. (2006) Topoisomerase I inhibitors: camptothecins and beyond. Nat. Rev. Cancer, 6, 789-802.
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 789-802
-
-
Pommier, Y.1
-
4
-
-
33644772382
-
Early effects of topoisomerase I inhibition on RNA polymerase II along transcribed genes in human cells
-
Khobta, A., Ferri, F., Lotito, L., Montecucco, A., Rossi, R. and Capranico, G. (2006) Early effects of topoisomerase I inhibition on RNA polymerase II along transcribed genes in human cells. J. Mol. Biol., 357, 127-138.
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 127-138
-
-
Khobta, A.1
Ferri, F.2
Lotito, L.3
Montecucco, A.4
Rossi, R.5
Capranico, G.6
-
5
-
-
0027186443
-
DNA topoisomerase I is involved in both repression and activation of transcription
-
Merino, A., Madden, K.R., Lane, W.S., Champoux, J.J. and Reinberg, D. (1993) DNA topoisomerase I is involved in both repression and activation of transcription. Nature, 365, 227-232.
-
(1993)
Nature
, vol.365
, pp. 227-232
-
-
Merino, A.1
Madden, K.R.2
Lane, W.S.3
Champoux, J.J.4
Reinberg, D.5
-
6
-
-
0027138674
-
Identification of human DNA topoisomerase I as a cofactor for activator-dependent transcription by RNA polymerase II
-
Kretzschmar, M., Meisterernst, M. and Roeder, R.G. (1993) Identification of human DNA topoisomerase I as a cofactor for activator-dependent transcription by RNA polymerase II. Proc. Natl Acad. Sci. USA, 90, 11508-11512.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 11508-11512
-
-
Kretzschmar, M.1
Meisterernst, M.2
Roeder, R.G.3
-
7
-
-
0031049483
-
Topoisomerase I enhances TFIID-TFIIA complex assembly during activation of transcription
-
Shykind, B.M., Kim, J., Stewart, L., Champoux, J.J. and Sharp, P.A. (1997) Topoisomerase I enhances TFIID-TFIIA complex assembly during activation of transcription. Genes Dev., 11, 397-407.
-
(1997)
Genes Dev.
, vol.11
, pp. 397-407
-
-
Shykind, B.M.1
Kim, J.2
Stewart, L.3
Champoux, J.J.4
Sharp, P.A.5
-
8
-
-
0030658833
-
Processing of topoisomerase I cleavable complexes into DNA damage by transcription
-
Wu, J. and Liu, L.F. (1997) Processing of topoisomerase I cleavable complexes into DNA damage by transcription. Nucleic Acids Res., 25, 4181-4186.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4181-4186
-
-
Wu, J.1
Liu, L.F.2
-
9
-
-
34548507690
-
In vivo dynamics of RNA polymerase II transcription
-
Darzacq, X., Shav-Tal, Y., de Turris, V., Brody, Y., Shenoy, S.M., Phair, R.D. and Singer, R.H. (2007) In vivo dynamics of RNA polymerase II transcription. Nat. Struct. Mol. Biol., 14, 796-806.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 796-806
-
-
Darzacq, X.1
Shav-Tal, Y.2
de Turris, V.3
Brody, Y.4
Shenoy, S.M.5
Phair, R.D.6
Singer, R.H.7
-
10
-
-
0029947168
-
The anti-cancer drug camptothecin inhibits elongation but stimulates initiation of RNA polymerase II transcription
-
Ljungman, M. and Hanawalt, P.C. (1996) The anti-cancer drug camptothecin inhibits elongation but stimulates initiation of RNA polymerase II transcription. Carcinogenesis, 17, 31-35.
-
(1996)
Carcinogenesis
, vol.17
, pp. 31-35
-
-
Ljungman, M.1
Hanawalt, P.C.2
-
11
-
-
0035200324
-
Transcriptional consequences of topoisomerase inhibition
-
Collins, I., Weber, A. and Levens, D. (2001) Transcriptional consequences of topoisomerase inhibition. Mol. Cell Biol., 21, 8437-8451.
-
(2001)
Mol. Cell Biol.
, vol.21
, pp. 8437-8451
-
-
Collins, I.1
Weber, A.2
Levens, D.3
-
12
-
-
40049085952
-
Global transcription regulation by DNA topoisomerase I in exponentially growing Saccharomyces cerevisiae cells: activation of telomere-proximal genes by TOP1 deletion
-
Lotito, L., Russo, A., Chillemi, G., Bueno, S., Cavalieri, D. and Capranico, G. (2008) Global transcription regulation by DNA topoisomerase I in exponentially growing Saccharomyces cerevisiae cells: activation of telomere-proximal genes by TOP1 deletion. J. Mol. Biol., 377, 311-322.
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 311-322
-
-
Lotito, L.1
Russo, A.2
Chillemi, G.3
Bueno, S.4
Cavalieri, D.5
Capranico, G.6
-
13
-
-
47849130071
-
Hyperphosphorylation of RNA polymerase II in response to topoisomerase I cleavage complexes and its association with transcription-and BRCA1-dependent degradation of topoisomerase I
-
Sordet, O., Larochelle, S., Nicolas, E., Stevens, E.V., Zhang, C., Shokat, K.M., Fisher, R.P. and Pommier, Y. (2008) Hyperphosphorylation of RNA polymerase II in response to topoisomerase I cleavage complexes and its association with transcription-and BRCA1-dependent degradation of topoisomerase I. J. Mol. Biol., 381, 540-549.
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 540-549
-
-
Sordet, O.1
Larochelle, S.2
Nicolas, E.3
Stevens, E.V.4
Zhang, C.5
Shokat, K.M.6
Fisher, R.P.7
Pommier, Y.8
-
14
-
-
0037378557
-
Transcription-dependent degradation of topoisomerase I-DNA covalent complexes
-
Desai, S.D., Zhang, H., Rodriguez-Bauman, A., Yang, J.M., Wu, X., Gounder, M.K., Rubin, E.H. and Liu, L.F. (2003) Transcription-dependent degradation of topoisomerase I-DNA covalent complexes. Mol. Cell Biol., 23, 2341-2350.
-
(2003)
Mol. Cell Biol.
, vol.23
, pp. 2341-2350
-
-
Desai, S.D.1
Zhang, H.2
Rodriguez-Bauman, A.3
Yang, J.M.4
Wu, X.5
Gounder, M.K.6
Rubin, E.H.7
Liu, L.F.8
-
15
-
-
65949092198
-
Camptothecin releases P-TEFb from the inactive 7SK snRNP complex
-
Amente, S., Gargano, B., Napolitano, G., Lania, L. and Majello, B. (2009) Camptothecin releases P-TEFb from the inactive 7SK snRNP complex. Cell Cycle, 8, 1249-1255.
-
(2009)
Cell Cycle
, vol.8
, pp. 1249-1255
-
-
Amente, S.1
Gargano, B.2
Napolitano, G.3
Lania, L.4
Majello, B.5
-
16
-
-
15444342958
-
Cellular and developmental control of O2 homeostasis by hypoxia-inducible factor 1 alpha
-
Iyer, N.V., Kotch, L.E., Agani, F., Leung, S.W., Laughner, E., Wenger, R.H., Gassmann, M., Gearhart, J.D., Lawler, A.M., Yu, A.Y. et al. (1998) Cellular and developmental control of O2 homeostasis by hypoxia-inducible factor 1 alpha. Genes Dev., 12, 149-162.
-
(1998)
Genes Dev
, vol.12
, pp. 149-162
-
-
Iyer, N.V.1
Kotch, L.E.2
Agani, F.3
Leung, S.W.4
Laughner, E.5
Wenger, R.H.6
Gassmann, M.7
Gearhart, J.D.8
Lawler, A.M.9
Yu, A.Y.10
-
17
-
-
0142166332
-
Targeting HIF-1 for cancer therapy
-
Semenza, G.L. (2003) Targeting HIF-1 for cancer therapy. Nat. Rev. Cancer, 3, 721-732.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 721-732
-
-
Semenza, G.L.1
-
18
-
-
1242271198
-
Topoisomerase I-mediated inhibition of hypoxia-inducible factor 1: mechanism and therapeutic implications
-
Rapisarda, A., Uranchimeg, B., Sordet, O., Pommier, Y., Shoemaker, R.H. and Melillo, G. (2004) Topoisomerase I-mediated inhibition of hypoxia-inducible factor 1: mechanism and therapeutic implications. Cancer Res., 64, 1475-1482.
-
(2004)
Cancer Res
, vol.64
, pp. 1475-1482
-
-
Rapisarda, A.1
Uranchimeg, B.2
Sordet, O.3
Pommier, Y.4
Shoemaker, R.H.5
Melillo, G.6
-
19
-
-
4944229705
-
Schedule-dependent inhibition of hypoxia-inducible factor-1alpha protein accumulation, angiogenesis, and tumor growth by topotecan in U251-HRE glioblastoma xenografts
-
Rapisarda, A., Zalek, J., Hollingshead, M., Braunschweig, T., Uranchimeg, B., Bonomi, C.A., Borgel, S.D., Carter, J.P., Hewitt, S.M., Shoemaker, R.H. et al. (2004) Schedule-dependent inhibition of hypoxia-inducible factor-1alpha protein accumulation, angiogenesis, and tumor growth by topotecan in U251-HRE glioblastoma xenografts. Cancer Res., 64, 6845-6848.
-
(2004)
Cancer Res
, vol.64
, pp. 6845-6848
-
-
Rapisarda, A.1
Zalek, J.2
Hollingshead, M.3
Braunschweig, T.4
Uranchimeg, B.5
Bonomi, C.A.6
Borgel, S.D.7
Carter, J.P.8
Hewitt, S.M.9
Shoemaker, R.H.10
-
20
-
-
34548763143
-
Nonclassic functions of human topoisomerase I: genome-wide and pharmacologic analyses
-
Miao, Z.H., Player, A., Shankavaram, U., Wang, Y.H., Zimonjic, D.B., Lorenzi, P.L., Liao, Z.Y., Liu, H., Shimura, T., Zhang, H.L. et al. (2007) Nonclassic functions of human topoisomerase I: genome-wide and pharmacologic analyses. Cancer Res., 67, 8752-8761.
-
(2007)
Cancer Res
, vol.67
, pp. 8752-8761
-
-
Miao, Z.H.1
Player, A.2
Shankavaram, U.3
Wang, Y.H.4
Zimonjic, D.B.5
Lorenzi, P.L.6
Liao, Z.Y.7
Liu, H.8
Shimura, T.9
Zhang, H.L.10
-
21
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov, P., Cheng, J., Dike, S., Nix, D.A., Duttagupta, R., Willingham, A.T., Stadler, P.F., Hertel, J., Hackermuller, J., Hofacker, I.L. et al. (2007) RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science, 316, 1484-1488.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
-
22
-
-
22144441320
-
Cisplatin damage: are DNA repair proteins saviors or traitors to the cell?
-
Zorbas, H. and Keppler, B.K. (2005) Cisplatin damage: are DNA repair proteins saviors or traitors to the cell? Chembiochem., 6, 1157-1166.
-
(2005)
Chembiochem
, vol.6
, pp. 1157-1166
-
-
Zorbas, H.1
Keppler, B.K.2
-
23
-
-
0030826233
-
A protein-mediated mechanism for the DNA sequence-specific action of topoisomerase II poisons
-
Capranico, G., Binaschi, M., Borgnetto, M.E., Zunino, F. and Palumbo, M. (1997) A protein-mediated mechanism for the DNA sequence-specific action of topoisomerase II poisons. Trends Pharmacol. Sci., 18, 323-329.
-
(1997)
Trends Pharmacol. Sci.
, vol.18
, pp. 323-329
-
-
Capranico, G.1
Binaschi, M.2
Borgnetto, M.E.3
Zunino, F.4
Palumbo, M.5
-
24
-
-
41349094797
-
Transcription regulation through promoter-proximal pausing of RNA polymerase II
-
Core, L.J. and Lis, J.T. (2008) Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science, 319, 1791-1792.
-
(2008)
Science
, vol.319
, pp. 1791-1792
-
-
Core, L.J.1
Lis, J.T.2
-
25
-
-
47549090254
-
NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
-
Gilchrist, D.A., Nechaev, S., Lee, C., Ghosh, S.K., Collins, J.B., Li, L., Gilmour, D.S. and Adelman, K. (2008) NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly. Genes Dev., 22, 1921-1933.
-
(2008)
Genes Dev
, vol.22
, pp. 1921-1933
-
-
Gilchrist, D.A.1
Nechaev, S.2
Lee, C.3
Ghosh, S.K.4
Collins, J.B.5
Li, L.6
Gilmour, D.S.7
Adelman, K.8
-
26
-
-
5444225805
-
Elongation by RNA polymerase II: the short and long of it
-
Sims, R.J. III, Belotserkovskaya, R. and Reinberg, D. (2004) Elongation by RNA polymerase II: the short and long of it. Genes Dev., 18, 2437-2468.
-
(2004)
Genes Dev
, vol.18
, pp. 2437-2468
-
-
Sims R.J. III1
Belotserkovskaya, R.2
Reinberg, D.3
-
27
-
-
2442425954
-
Elongator interactions with nascent mRNA revealed by RNA immunoprecipitation
-
Gilbert, C., Kristjuhan, A., Winkler, G.S. and Svejstrup, J.Q. (2004) Elongator interactions with nascent mRNA revealed by RNA immunoprecipitation. Mol. Cell, 14, 457-464.
-
(2004)
Mol. Cell
, vol.14
, pp. 457-464
-
-
Gilbert, C.1
Kristjuhan, A.2
Winkler, G.S.3
Svejstrup, J.Q.4
-
28
-
-
33748351186
-
Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells
-
Listerman, I., Sapra, A.K. and Neugebauer, K.M. (2006) Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat. Struct. Mol. Biol., 13, 815-822.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 815-822
-
-
Listerman, I.1
Sapra, A.K.2
Neugebauer, K.M.3
-
29
-
-
37849036555
-
RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes
-
Glover-Cutter, K., Kim, S., Espinosa, J. and Bentley, D.L. (2008) RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes. Nat. Struct. Mol. Biol., 15, 71-78.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 71-78
-
-
Glover-Cutter, K.1
Kim, S.2
Espinosa, J.3
Bentley, D.L.4
-
30
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis, T. and Reed, R. (2002) An extensive network of coupling among gene expression machines. Nature, 416, 499-506.
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
31
-
-
0033585496
-
aHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia
-
Thrash-Bingham, C.A. and Tartof, K.D. (1999) aHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia. J. Natl Cancer Inst., 91, 143-151.
-
(1999)
J. Natl Cancer Inst.
, vol.91
, pp. 143-151
-
-
Thrash-Bingham, C.A.1
Tartof, K.D.2
-
32
-
-
0042528729
-
Heterochromatin and epigenetic control of gene expression
-
Grewal, S.I. and Moazed, D. (2003) Heterochromatin and epigenetic control of gene expression. Science, 301, 798-802.
-
(2003)
Science
, vol.301
, pp. 798-802
-
-
Grewal, S.I.1
Moazed, D.2
-
33
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu, W., Gius, D., Onyango, P., Muldoon-Jacobs, K., Karp, J., Feinberg, A.P. and Cui, H. (2008) Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature, 451, 202-206.
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
Cui, H.7
-
34
-
-
34247355825
-
The effects of camptothecin on RNA polymerase II transcription: roles of DNA topoisomerase I
-
Capranico, G., Ferri, F., Fogli, M.V., Russo, A., Lotito, L. and Baranello, L. (2007) The effects of camptothecin on RNA polymerase II transcription: roles of DNA topoisomerase I. Biochimie, 89, 482-489.
-
(2007)
Biochimie
, vol.89
, pp. 482-489
-
-
Capranico, G.1
Ferri, F.2
Fogli, M.V.3
Russo, A.4
Lotito, L.5
Baranello, L.6
-
35
-
-
66049098191
-
7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development
-
Barboric, M., Lenasi, T., Chen, H., Johansen, E.B., Guo, S. and Peterlin, B.M. (2009) 7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development. Proc. Natl Acad. Sci. USA, 106, 7798-7803.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 7798-7803
-
-
Barboric, M.1
Lenasi, T.2
Chen, H.3
Johansen, E.B.4
Guo, S.5
Peterlin, B.M.6
-
36
-
-
65549147264
-
DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation
-
Munoz, M.J., Perez Santangelo, M.S., Paronetto, M.P., de la Mata, M., Pelisch, F., Boireau, S., Glover-Cutter, K., Ben-Dov, C., Blaustein, M., Lozano, J.J. et al. (2009) DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation. Cell, 137, 708-720.
-
(2009)
Cell
, vol.137
, pp. 708-720
-
-
Munoz, M.J.1
Perez Santangelo, M.S.2
Paronetto, M.P.3
de la Mata, M.4
Pelisch, F.5
Boireau, S.6
Glover-Cutter, K.7
Ben-Dov, C.8
Blaustein, M.9
Lozano, J.J.10
-
37
-
-
42449089029
-
Coupling transcription and alternative splicing
-
Kornblihtt, A.R. (2007) Coupling transcription and alternative splicing. Adv. Exp. Med. Biol., 623, 175-189.
-
(2007)
Adv. Exp. Med. Biol.
, vol.623
, pp. 175-189
-
-
Kornblihtt, A.R.1
-
38
-
-
34447509295
-
Antitumour drugs impede DNA uncoiling by topoisomerase I
-
Koster, D.A., Palle, K., Bot, E.S., Bjornsti, M.A. and Dekker, N.H. (2007) Antitumour drugs impede DNA uncoiling by topoisomerase I. Nature, 448, 213-217.
-
(2007)
Nature
, vol.448
, pp. 213-217
-
-
Koster, D.A.1
Palle, K.2
Bot, E.S.3
Bjornsti, M.A.4
Dekker, N.H.5
-
39
-
-
0033565259
-
Plasmid linking number change induced by topoisomerase I-mediated DNA damage
-
Duann, P., Sun, M., Lin, C.T., Zhang, H. and Liu, L.F. (1999) Plasmid linking number change induced by topoisomerase I-mediated DNA damage. Nucleic Acids Res., 27, 2905-2911.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 2905-2911
-
-
Duann, P.1
Sun, M.2
Lin, C.T.3
Zhang, H.4
Liu, L.F.5
-
40
-
-
38849132828
-
The functional response of upstream DNA to dynamic supercoiling in vivo
-
Kouzine, F., Sanford, S., Elisha-Feil, Z. and Levens, D. (2008) The functional response of upstream DNA to dynamic supercoiling in vivo. Nat. Struct. Mol. Biol., 15, 146-154.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 146-154
-
-
Kouzine, F.1
Sanford, S.2
Elisha-Feil, Z.3
Levens, D.4
-
41
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila, A.C., Calabrese, J.M., Levine, S.S., Yeo, G.W., Rahl, P.B., Flynn, R.A., Young, R.A. and Sharp, P.A. (2008) Divergent transcription from active promoters. Science, 322, 1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
42
-
-
33751536642
-
Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms
-
Lapidot, M. and Pilpel, Y. (2006) Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. EMBO Rep., 7, 1216-1222.
-
(2006)
EMBO Rep
, vol.7
, pp. 1216-1222
-
-
Lapidot, M.1
Pilpel, Y.2
-
43
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
Kapranov, P., Willingham, A.T. and Gingeras, T.R. (2007) Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet., 8, 413-423.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
|