-
1
-
-
74949111069
-
A possible conformation for double-stranded polynucleotides
-
Rodley GA, Scobie RS, Bates RHT, et al. 1976. A possible conformation for double-stranded polynucleotides. Proc Natl Acad Sci USA 75: 4092-6.
-
(1976)
Proc Natl Acad Sci USA
, vol.75
, pp. 4092-4096
-
-
Rodley, G.A.1
Scobie, R.S.2
Bates, R.H.T.3
-
2
-
-
0018164915
-
Topological considerations in the theory of replication of DNA
-
Pohl WF, Roberts GW. 1978. Topological considerations in the theory of replication of DNA. J Math Biol 6: 383-402.
-
(1978)
J Math Biol
, vol.6
, pp. 383-402
-
-
Pohl, W.F.1
Roberts, G.W.2
-
4
-
-
0001127148
-
Topoisomerases and the swivel problem
-
Alberts B, ed;, New York: Academic Press, Inc. p
-
Champoux JJ, Been MD. 1980. Topoisomerases and the swivel problem. In Alberts B, ed; Mechanistic Studies of DNA Replication and Genetic Recombination: ICN-UCLA Symposia on Molecular and Cellular Biology. Volume XIX. New York: Academic Press, Inc. p 809-15.
-
(1980)
Mechanistic Studies of DNA Replication and Genetic Recombination: ICN-UCLA Symposia on Molecular and Cellular Biology
, vol.19
, pp. 809-815
-
-
Champoux, J.J.1
Been, M.D.2
-
5
-
-
84910888731
-
Final stages of DNA replication: Multiply intertwined catenated dimers as SV40 segregation intermediates
-
Cozzarelli NR, ed;, New York: Alan R. Liss, Inc. p
-
Varshavsky A, Sundin O, Ozkaynak E, et al. 1983. Final stages of DNA replication: multiply intertwined catenated dimers as SV40 segregation intermediates. In Cozzarelli NR, ed; Mechanisms of DNA Replication and Recombination, UCLA Symposia on Molecular and Cellular Biology. Volume 10. New York: Alan R. Liss, Inc. p 463-94.
-
(1983)
Mechanisms of DNA Replication and Recombination, UCLA Symposia on Molecular and Cellular Biology
, vol.10
, pp. 463-494
-
-
Varshavsky, A.1
Sundin, O.2
Ozkaynak, E.3
-
6
-
-
0010274664
-
DNA replication: Topological aspects and the roles of DNA topoisomerases
-
Cozzarelli NR, Wang JC, ed;, Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. p
-
Wang JC, Liu LF. 1990. DNA replication: topological aspects and the roles of DNA topoisomerases. In Cozzarelli NR, Wang JC, ed; DNA Topology and Its Biological Effects. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. p 321-340.
-
(1990)
DNA Topology and Its Biological Effects
, pp. 321-340
-
-
Wang, J.C.1
Liu, L.F.2
-
8
-
-
0033369761
-
Mechanisms of separation of the complementary strands of DNA during replication
-
Alexandrov AI, Cozzarelli NR, Holmes VF, et al. 1999. Mechanisms of separation of the complementary strands of DNA during replication. Genetica 106: 131-40.
-
(1999)
Genetica
, vol.106
, pp. 131-140
-
-
Alexandrov, A.I.1
Cozzarelli, N.R.2
Holmes, V.F.3
-
9
-
-
0026703543
-
Chromosome and plasmid partitioning in Escherichia coli
-
Hiraga S. 1992. Chromosome and plasmid partitioning in Escherichia coli. Annu Rev Biochem 61: 283-306.
-
(1992)
Annu Rev Biochem
, vol.61
, pp. 283-306
-
-
Hiraga, S.1
-
10
-
-
0027458115
-
Chromosome segregation in yeast
-
Page B, Snyder M. 1993 Chromosome segregation in yeast. Ann Rev Microbiol 47: 231-61.
-
(1993)
Ann Rev Microbiol
, vol.47
, pp. 231-261
-
-
Page, B.1
Snyder, M.2
-
11
-
-
0031695155
-
Moving one DNA double helix through another by a type II DNA topoisomerase: The story of a simple molecular machine
-
Wang JC. 1998. Moving one DNA double helix through another by a type II DNA topoisomerase: the story of a simple molecular machine. Q Rev Biophys 31: 107-44.
-
(1998)
Q Rev Biophys
, vol.31
, pp. 107-144
-
-
Wang, J.C.1
-
12
-
-
0030758268
-
Simplification of DNA topology below equilibrium values by type II topoisomerases
-
Rybenkov VV, Ullsperger C, Vologodskii AV, et al. 1997. Simplification of DNA topology below equilibrium values by type II topoisomerases. Science 277: 690-3.
-
(1997)
Science
, vol.277
, pp. 690-693
-
-
Rybenkov, V.V.1
Ullsperger, C.2
Vologodskii, A.V.3
-
13
-
-
67249099763
-
Theoretical models of DNA topology simplification by Type IIA DNA topoisomerases
-
Vologodskii A. 2009. Theoretical models of DNA topology simplification by Type IIA DNA topoisomerases. Nucl Acids Res 37: 3125-33.
-
(2009)
Nucl Acids Res
, vol.37
, pp. 3125-3133
-
-
Vologodskii, A.1
-
14
-
-
0017795493
-
Structure and reactions of closed duplex DNA
-
Bauer WR. 1978. Structure and reactions of closed duplex DNA. Ann Rev Biophys Bioeng 7: 287-313.
-
(1978)
Ann Rev Biophys Bioeng
, vol.7
, pp. 287-313
-
-
Bauer, W.R.1
-
15
-
-
0015040327
-
The writhing number of a space curve
-
Fuller FB. 1971. The writhing number of a space curve. Proc Natl Acad Sci USA 68: 815-9.
-
(1971)
Proc Natl Acad Sci USA
, vol.68
, pp. 815-819
-
-
Fuller, F.B.1
-
17
-
-
0003564812
-
-
Oxford: Oxford University Press Inc. 198 p
-
Bates AD, Maxwell A. 2005. DNA topology. Oxford: Oxford University Press Inc. 198 p.
-
(2005)
DNA topology
-
-
Bates, A.D.1
Maxwell, A.2
-
18
-
-
0031588905
-
The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation
-
Rybenkov VV, Vologodskii AV, Cozzarelli NR. 1997. The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation. J Mol Biol 267: 312-23.
-
(1997)
J Mol Biol
, vol.267
, pp. 312-323
-
-
Rybenkov, V.V.1
Vologodskii, A.V.2
Cozzarelli, N.R.3
-
19
-
-
0023664670
-
DNA gyrase-catalyzed decatenation of multiply linked DNA dimers
-
Marians KJ. 1987. DNA gyrase-catalyzed decatenation of multiply linked DNA dimers. J Biol Chem 262: 10362-8.
-
(1987)
J Biol Chem
, vol.262
, pp. 10362-10368
-
-
Marians, K.J.1
-
20
-
-
0029678247
-
The probabilities of supercoil removal and decatenation by yeast DNA topoisomerase II
-
Roca J, Wang JC. 1996. The probabilities of supercoil removal and decatenation by yeast DNA topoisomerase II. Genes Cells 1: 17-27.
-
(1996)
Genes Cells
, vol.1
, pp. 17-27
-
-
Roca, J.1
Wang, J.C.2
-
21
-
-
69849112239
-
Interplay of DNA supercoiling and catenation during the segregation of sister duplexes
-
Martinez-Robles ML, Witz G, Hernández P, et al. 2009. Interplay of DNA supercoiling and catenation during the segregation of sister duplexes. Nucl Acids Res 37: 5126-37.
-
(2009)
Nucl Acids Res
, vol.37
, pp. 5126-5137
-
-
Martinez-Robles, M.L.1
Witz, G.2
Hernández, P.3
-
22
-
-
84889965663
-
Simulation of equilibrium and dynamic properties of large DNA molecules
-
Lankas F, Sponer J, ed;, Dordrecht, The Netherlands: Springer. p
-
Vologodskii A. 2006. Simulation of equilibrium and dynamic properties of large DNA molecules. In Lankas F, Sponer J, ed; Computational Studies of DNA and RNA. Dordrecht, The Netherlands: Springer. p 579-604.
-
(2006)
Computational Studies of DNA and RNA
, pp. 579-604
-
-
Vologodskii, A.1
-
24
-
-
0017389770
-
Interactions of highly charged colloidal cylinders with applications to double-stranded DNA
-
Stigter D. 1977. Interactions of highly charged colloidal cylinders with applications to double-stranded DNA. Biopolymers 16: 1435-48.
-
(1977)
Biopolymers
, vol.16
, pp. 1435-1448
-
-
Stigter, D.1
-
25
-
-
0019578292
-
Thermodynamics and equilibrium sedimentation analysis of the close approach of DNA molecules and a molecular ordering transition
-
Brian AA, Frisch HL, Lerman LS. 1981. Thermodynamics and equilibrium sedimentation analysis of the close approach of DNA molecules and a molecular ordering transition. Biopolymers 20: 1305-28.
-
(1981)
Biopolymers
, vol.20
, pp. 1305-1328
-
-
Brian, A.A.1
Frisch, H.L.2
Lerman, L.S.3
-
26
-
-
0030740986
-
The effect of ionic conditions on DNA helical repeat, effective diameter, and free energy of supercoiling
-
Rybenkov VV, Vologodskii AV, Cozzarelli NR. 1997. The effect of ionic conditions on DNA helical repeat, effective diameter, and free energy of supercoiling. Nucl Acids Res 25: 1412-8.
-
(1997)
Nucl Acids Res
, vol.25
, pp. 1412-1418
-
-
Rybenkov, V.V.1
Vologodskii, A.V.2
Cozzarelli, N.R.3
-
27
-
-
0021089697
-
Energetics of DNA twisting. II. Topoisomer analysis
-
Shore D, Baldwin RL. 1983. Energetics of DNA twisting. II. Topoisomer analysis. J Mol Biol 170: 983-1007.
-
(1983)
J Mol Biol
, vol.170
, pp. 983-1007
-
-
Shore, D.1
Baldwin, R.L.2
-
28
-
-
0021320555
-
Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling
-
Horowitz DS, Wang JC. 1984. Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling. J Mol Biol 173: 75-91.
-
(1984)
J Mol Biol
, vol.173
, pp. 75-91
-
-
Horowitz, D.S.1
Wang, J.C.2
-
29
-
-
0022389525
-
Rotational dynamics of DNA from 10e-10 to 10e-5 seconds: Comparison theory with optical experiments
-
Shibata JM, Fujimoto BS, Schurr JM. 1985. Rotational dynamics of DNA from 10e-10 to 10e-5 seconds: comparison theory with optical experiments. Biopolymers 24: 1909-30.
-
(1985)
Biopolymers
, vol.24
, pp. 1909-1930
-
-
Shibata, J.M.1
Fujimoto, B.S.2
Schurr, J.M.3
-
31
-
-
0041305824
-
Structural transitions and elasticity from torque measurements on DNA
-
Bryant Z, Stone MD, Gore J, et al. 2003. Structural transitions and elasticity from torque measurements on DNA. Nature 424: 338-41.
-
(2003)
Nature
, vol.424
, pp. 338-341
-
-
Bryant, Z.1
Stone, M.D.2
Gore, J.3
-
32
-
-
0026712869
-
The role of topoisomerase IV in partitioning bacterial replicons and the structure of catenated intermediates in DNA replication
-
Adams DE, Shekhtman EM, Zechiedrich EL, et al. 1992. The role of topoisomerase IV in partitioning bacterial replicons and the structure of catenated intermediates in DNA replication. Cell 71: 277-88.
-
(1992)
Cell
, vol.71
, pp. 277-288
-
-
Adams, D.E.1
Shekhtman, E.M.2
Zechiedrich, E.L.3
-
34
-
-
0028858007
-
Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli
-
Zechiedrich EL, Cozzarelli NR. 1995. Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli. Genes Develop 9: 2859-69.
-
(1995)
Genes Develop
, vol.9
, pp. 2859-2869
-
-
Zechiedrich, E.L.1
Cozzarelli, N.R.2
-
35
-
-
0001074488
-
Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis
-
Keller W. 1975. Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis. Proc Natl Acad Sci USA 72: 4876-80.
-
(1975)
Proc Natl Acad Sci USA
, vol.72
, pp. 4876-4880
-
-
Keller, W.1
-
37
-
-
33947324808
-
-
Protein-induced local DNA bends regulate global topological complexity of recombination products
-
Du Q, Livshits A, Kwiatek A, et al. 2007. Protein-induced local DNA bends regulate global topological complexity of recombination products. J Mol Biol 368: 170-82.
-
(2007)
J Mol Biol
, vol.368
, pp. 170-182
-
-
Du, Q.1
Livshits, A.2
Kwiatek, A.3
-
38
-
-
0030771373
-
Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli
-
Zechiedrich EL, Khodursky AB, Cozzarelli NR. 1997. Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli. Genes Dev 11: 2580-92.
-
(1997)
Genes Dev
, vol.11
, pp. 2580-2592
-
-
Zechiedrich, E.L.1
Khodursky, A.B.2
Cozzarelli, N.R.3
-
39
-
-
11344266685
-
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
-
Peter BJ, Arsuaga J, Breier AM, et al. 2004. Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol 5: R87.
-
(2004)
Genome Biol
, vol.5
-
-
Peter, B.J.1
Arsuaga, J.2
Breier, A.M.3
|