메뉴 건너뛰기




Volumn 105, Issue 3, 2010, Pages 477-488

Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans

Author keywords

Cellulose; GC TOF MS; Metabolomics; Saccharophgus degradans; Xylan

Indexed keywords

CARBON SOURCE; CONSERVE ENERGY; GC-TOF MS; GLUCURONIC ACIDS; METABOLIC PROFILING; METABOLIC SYSTEMS; METABOLITE PROFILES; METABOLITE PROFILING; METABOLOMICS; MICROBIAL METABOLISM; PENTOSE PHOSPHATE PATHWAY; PLANT BIOMASS; PLANT CELL WALL; SACCHAROPHAGUS DEGRADANS; SOLE CARBON SOURCE; SPECIFIC ACTIVITY; TIME OF FLIGHT; TIME OF FLIGHT MASS SPECTROMETRY; XYLANASE ACTIVITY;

EID: 74849138875     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.22557     Document Type: Article
Times cited : (27)

References (51)
  • 1
    • 4344653896 scopus 로고    scopus 로고
    • Enzyme system of Clostridium stercorarium for hydrolysis of arabinoxylan: Reconstitution of the in vivo system from recombinant enzymes
    • Adelsberger H, Hertel C, Glawischnig E, Zverlov VV, Schwarz WH. 2004. Enzyme system of Clostridium stercorarium for hydrolysis of arabinoxylan: Reconstitution of the in vivo system from recombinant enzymes. Microbiology (UK) 150:2257-2266.
    • (2004) Microbiology (UK) , vol.150 , pp. 2257-2266
    • Adelsberger, H.1    Hertel, C.2    Glawischnig, E.3    Zverlov, V.V.4    Schwarz, W.H.5
  • 2
    • 0020069175 scopus 로고
    • Purification and properties of a periplasmic D-xylose-binding protein from Escherichia coli K-12
    • Ahlem C, Huisman W, Neslund G, Dahms AS. 1982. Purification and properties of a periplasmic D-xylose-binding protein from Escherichia coli K-12. J Biol Chem 257(6):2926-2931.
    • (1982) J Biol Chem , vol.257 , Issue.6 , pp. 2926-2931
    • Ahlem, C.1    Huisman, W.2    Neslund, G.3    Dahms, A.S.4
  • 3
    • 0016991384 scopus 로고
    • Selective advantages of various bacterial carbohydrate transport mechanisms
    • Andrews KJ, Lin ECC. 1976. Selective advantages of various bacterial carbohydrate transport mechanisms. Fed Proc 35(10):2185-2189.
    • (1976) Fed Proc , vol.35 , Issue.10 , pp. 2185-2189
    • Andrews, K.J.1    Lin, E.C.C.2
  • 4
    • 0009694866 scopus 로고
    • Isolation of a new polysaccharide-digesting bacterium from a salt marsh
    • Andrykovitch G, Marx I. 1988. Isolation of a new polysaccharide-digesting bacterium from a salt marsh. Appl Environ Microbiol 54(4):1061-1062.
    • (1988) Appl Environ Microbiol , vol.54 , Issue.4 , pp. 1061-1062
    • Andrykovitch, G.1    Marx, I.2
  • 5
    • 0039519782 scopus 로고    scopus 로고
    • The cellulolytic system of Clostridium cellulolyticum
    • Bélaich J-P, Tardif C, Bélaich A, Gaudin C. 1997. The cellulolytic system of Clostridium cellulolyticum. J Biotechnol 57(1-3):3-14.
    • (1997) J Biotechnol , vol.57 , Issue.1-3 , pp. 3-14
    • Bélaich, J.-P.1    Tardif, C.2    Bélaich, A.3    Gaudin, C.4
  • 6
    • 0027984011 scopus 로고
    • The cellulosome-A treasure-trove for biotechnology
    • Bayer EA, Morag E, Lamed R. 1994. The cellulosome-A treasure-trove for biotechnology. Trends Biotechnol 12(9):379-386.
    • (1994) Trends Biotechnol , vol.12 , Issue.9 , pp. 379-386
    • Bayer, E.A.1    Morag, E.2    Lamed, R.3
  • 8
    • 0028727382 scopus 로고
    • Hydrothermal degradation of polymers derived from plants
    • Bobleter O. 1994. Hydrothermal degradation of polymers derived from plants. Prog Polym Sci 19(5):797-841.
    • (1994) Prog Polym Sci , vol.19 , Issue.5 , pp. 797-841
    • Bobleter, O.1
  • 9
    • 0028028342 scopus 로고
    • Lipids and fatty acids in cellulosomes of Clostridium thermocellum
    • Bolobova AV, Zhukov AV, Klyosov AA. 1994. Lipids and fatty acids in cellulosomes of Clostridium thermocellum. Appl Microbiol Biotechnol 42(1):128-133.
    • (1994) Appl Microbiol Biotechnol , vol.42 , Issue.1 , pp. 128-133
    • Bolobova, A.V.1    Zhukov, A.V.2    Klyosov, A.A.3
  • 10
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72(1-2):248-254.
    • (1976) Anal Biochem , vol.72 , Issue.1-2 , pp. 248-254
    • Bradford, M.M.1
  • 11
    • 34548496685 scopus 로고    scopus 로고
    • Proteomic and transcriptomic analysis of extracellular proteins and mRNA levels in Thermobifida fusca grown on cellobiose and glucose
    • Chen S, Wilson DB. 2007. Proteomic and transcriptomic analysis of extracellular proteins and mRNA levels in Thermobifida fusca grown on cellobiose and glucose. J Bacteriol 189(17):6260-6265.
    • (2007) J Bacteriol , vol.189 , Issue.17 , pp. 6260-6265
    • Chen, S.1    Wilson, D.B.2
  • 12
    • 0035704319 scopus 로고    scopus 로고
    • DNA metabolism in Mycobacterium leprae
    • Dawes SS, Mizrahi V. 2001. DNA metabolism in Mycobacterium leprae. Lepr Rev 72(4):408-414.
    • (2001) Lepr Rev , vol.72 , Issue.4 , pp. 408-414
    • Dawes, S.S.1    Mizrahi, V.2
  • 14
    • 0034123182 scopus 로고    scopus 로고
    • Cellulose catabolism by Clostridium cellulolyticum growing in batch culture on defined medium
    • Desvaux M, Guedon E, Petitdemange H. 2000. Cellulose catabolism by Clostridium cellulolyticum growing in batch culture on defined medium. Appl Environ Microbiol 66(6):2461-2470.
    • (2000) Appl Environ Microbiol , vol.66 , Issue.6 , pp. 2461-2470
    • Desvaux, M.1    Guedon, E.2    Petitdemange, H.3
  • 16
    • 0032847602 scopus 로고    scopus 로고
    • Expression of multiple complex polysaccharide-degrading enzyme systems by marine bacterium strain 2-40
    • Ensor LA, Stosz SK, Weiner RM. 1999. Expression of multiple complex polysaccharide-degrading enzyme systems by marine bacterium strain 2-40. J Ind Microbiol Biotechnol 23(2):123-126.
    • (1999) J Ind Microbiol Biotechnol , vol.23 , Issue.2 , pp. 123-126
    • Ensor, L.A.1    Stosz, S.K.2    Weiner, R.M.3
  • 18
    • 0027284092 scopus 로고
    • Aspergillus sydowii MG 49 is a strong producer of thermostable xylanolytic enzymes
    • Ghosh M, Das A, Mishra AK, Nanda G. 1993. Aspergillus sydowii MG 49 is a strong producer of thermostable xylanolytic enzymes. Enzyme Microb Technol 15(8):703-709.
    • (1993) Enzyme Microb Technol , vol.15 , Issue.8 , pp. 703-709
    • Ghosh, M.1    Das, A.2    Mishra, A.K.3    Nanda, G.4
  • 19
    • 40049091477 scopus 로고    scopus 로고
    • Involvement of cell fatty acid composition and lipid metabolism in adhesion mechanism of Listeria monocytogenes
    • Gianotti A, Serrazanetti D, Kamdem SS, Guerzoni ME. 2008. Involvement of cell fatty acid composition and lipid metabolism in adhesion mechanism of Listeria monocytogenes. Int J Food Microbiol 123(1-2):9-17.
    • (2008) Int J Food Microbiol , vol.123 , Issue.1-2 , pp. 9-17
    • Gianotti, A.1    Serrazanetti, D.2    Kamdem, S.S.3    Guerzoni, M.E.4
  • 20
    • 0032912348 scopus 로고    scopus 로고
    • Carbon and electron flow in Clostridium cellulolyticum grown in chemostat culture on synthetic medium
    • Guedon E, Payot S, Desvaux M, Petitdemange H. 1999. Carbon and electron flow in Clostridium cellulolyticum grown in chemostat culture on synthetic medium. J Bacteriol 181(10):3262-3269.
    • (1999) J Bacteriol , vol.181 , Issue.10 , pp. 3262-3269
    • Guedon, E.1    Payot, S.2    Desvaux, M.3    Petitdemange, H.4
  • 21
    • 51849161161 scopus 로고    scopus 로고
    • Cloning and enzymatic characterization of a xylanase gene from a soil-derived metagenomic library with an efficient approach
    • Hu Y, Zhang G, Li A, Chen J, Ma L. 2008. Cloning and enzymatic characterization of a xylanase gene from a soil-derived metagenomic library with an efficient approach. Appl Microbiol Biotechnol 80(5): 823-830.
    • (2008) Appl Microbiol Biotechnol , vol.80 , Issue.5 , pp. 823-830
    • Hu, Y.1    Zhang, G.2    Li, A.3    Chen, J.4    Ma, L.5
  • 22
    • 1242264261 scopus 로고    scopus 로고
    • Metabolic engineering for improved fermentation of pentoses by yeasts
    • Jeffries TW, Jin Y-S. 2004. Metabolic engineering for improved fermentation of pentoses by yeasts. Appl Microbiol Biotechnol 63(5):495-509.
    • (2004) Appl Microbiol Biotechnol , vol.63 , Issue.5 , pp. 495-509
    • Jeffries, T.W.1    Jin, Y.-S.2
  • 23
    • 14844336341 scopus 로고    scopus 로고
    • Conversion of bark-rich biomass mixture into fermentable sugar by two-stage dilute acid-catalyzed hydrolysis
    • Kim KH, Tucker M, Nguyen Q. 2005. Conversion of bark-rich biomass mixture into fermentable sugar by two-stage dilute acid-catalyzed hydrolysis. Bioresour Technol 96(11):1249-1255.
    • (2005) Bioresour Technol , vol.96 , Issue.11 , pp. 1249-1255
    • Kim, K.H.1    Tucker, M.2    Nguyen, Q.3
  • 24
    • 1642527943 scopus 로고    scopus 로고
    • Global potential bioethanol production from wasted crops and crop residues
    • Kim S, Dale BE. 2004. Global potential bioethanol production from wasted crops and crop residues. Biomass Bioenerg 26(4):361-375.
    • (2004) Biomass Bioenerg , vol.26 , Issue.4 , pp. 361-375
    • Kim, S.1    Dale, B.E.2
  • 25
    • 42149108423 scopus 로고    scopus 로고
    • Bioconversion of lignocellulosic biomass: Biochemical and molecular perspectives
    • Kumar R, Singh S, Singh OV. 2008. Bioconversion of lignocellulosic biomass: Biochemical and molecular perspectives. J Ind Microbiol Biotechnol 35(5):377-391.
    • (2008) J Ind Microbiol Biotechnol , vol.35 , Issue.5 , pp. 377-391
    • Kumar, R.1    Singh, S.2    Singh, O.V.3
  • 27
    • 43649098283 scopus 로고    scopus 로고
    • High quality metabolomic data for Chlamydomonas reinhardtii
    • Lee DY, Fiehn O. 2008. High quality metabolomic data for Chlamydomonas reinhardtii. Plant Methods 4:7.
    • (2008) Plant Methods , vol.4 , pp. 7
    • Lee, D.Y.1    Fiehn, O.2
  • 28
    • 0343924314 scopus 로고    scopus 로고
    • Biological conversion of lignocellulosic biomass to ethanol
    • Lee J. 1997. Biological conversion of lignocellulosic biomass to ethanol. J Biotechnol 56(1):1-24.
    • (1997) J Biotechnol , vol.56 , Issue.1 , pp. 1-24
    • Lee, J.1
  • 31
    • 0029832663 scopus 로고    scopus 로고
    • Carbon catabolite repression of xylanase I (xyn1) gene expression in Trichoderma reesei
    • Mach RL, Strauss J, Zeilinger S, Schindler M, Kubicek CP. 1996. Carbon catabolite repression of xylanase I (xyn1) gene expression in Trichoderma reesei. Mol Microbiol 21(6):1273-1281.
    • (1996) Mol Microbiol , vol.21 , Issue.6 , pp. 1273-1281
    • Mach, R.L.1    Strauss, J.2    Zeilinger, S.3    Schindler, M.4    Kubicek, C.P.5
  • 32
    • 0343581290 scopus 로고    scopus 로고
    • Expression patterns of ten hemicellulase genes of the filamentous fungus Trichoderma reesei on various carbon sources
    • Margolles-Clark E, Ilmén M, Penttila M. 1997. Expression patterns of ten hemicellulase genes of the filamentous fungus Trichoderma reesei on various carbon sources. J Biotechnol 57(1-3):167-179.
    • (1997) J Biotechnol , vol.57 , Issue.1-3 , pp. 167-179
    • Margolles-Clark, E.1    Ilmén, M.2    Penttila, M.3
  • 34
    • 33747333106 scopus 로고
    • Use of dinitrosalicylic acid reagent for determination of reducing sugar
    • Miller GL. 1959. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31(3):426-428.
    • (1959) Anal Chem , vol.31 , Issue.3 , pp. 426-428
    • Miller, G.L.1
  • 35
    • 0035187373 scopus 로고    scopus 로고
    • Eubacterium cellulosolvens alters its membrane protein, lipoprotein, and fatty acid composition in response to growth on cellulose
    • Moon M, Anderson KL. 2001. Eubacterium cellulosolvens alters its membrane protein, lipoprotein, and fatty acid composition in response to growth on cellulose. Anaerobe 7(4):227-236.
    • (2001) Anaerobe , vol.7 , Issue.4 , pp. 227-236
    • Moon, M.1    Anderson, K.L.2
  • 36
    • 22544481455 scopus 로고    scopus 로고
    • The influence of different cultivation conditions on the metabolome of Fusarium oxysporum
    • Panagiotou G, Christakopoulos P, Olsson L. 2005a. The influence of different cultivation conditions on the metabolome of Fusarium oxysporum. J Biotechnol 118(3):304-315.
    • (2005) J Biotechnol , vol.118 , Issue.3 , pp. 304-315
    • Panagiotou, G.1    Christakopoulos, P.2    Olsson, L.3
  • 37
    • 14544294432 scopus 로고    scopus 로고
    • Simultaneous saccharification and fermentation of cellulose by Fusarium oxysporum F3-Growth characteristics and metabolite profiling
    • Panagiotou G, Christakopoulos P, Olsson L. 2005b. Simultaneous saccharification and fermentation of cellulose by Fusarium oxysporum F3-Growth characteristics and metabolite profiling. Enzyme Microb Technol 36(5-6):693-699.
    • (2005) Enzyme Microb Technol , vol.36 , Issue.5-6 , pp. 693-699
    • Panagiotou, G.1    Christakopoulos, P.2    Olsson, L.3
  • 38
    • 9944259534 scopus 로고    scopus 로고
    • Fermentation performance and intracellular metabolite profiling of Fusarium oxysporum cultivated on a glucose-xylose mixture
    • Panagiotou G, Christakopoulos P, Villas-Boas SG, Olsson L. 2005c. Fermentation performance and intracellular metabolite profiling of Fusarium oxysporum cultivated on a glucose-xylose mixture. Enzyme Microb Technol 36(1):100-106.
    • (2005) Enzyme Microb Technol , vol.36 , Issue.1 , pp. 100-106
    • Panagiotou, G.1    Christakopoulos, P.2    Villas-Boas, S.G.3    Olsson, L.4
  • 42
    • 33751282920 scopus 로고    scopus 로고
    • Regulation of purine nucleotide biosynthesis: In yeast and beyond
    • Rolfes RJ. 2006. Regulation of purine nucleotide biosynthesis: In yeast and beyond. Biochem Soc Trans 34:786-790.
    • (2006) Biochem Soc Trans , vol.34 , pp. 786-790
    • Rolfes, R.J.1
  • 43
    • 0018399752 scopus 로고
    • Uptake and catabolism of D-xylose in Salmonella typhimurium LT2
    • Shamanna DK, Sanderson KE. 1979. Uptake and catabolism of D-xylose in Salmonella typhimurium LT2. J Bacteriol 139(1):64-70.
    • (1979) J Bacteriol , vol.139 , Issue.1 , pp. 64-70
    • Shamanna, D.K.1    Sanderson, K.E.2
  • 47
    • 0034177384 scopus 로고    scopus 로고
    • Effect of oligosaccharides and fibre substitutes on short-chain fatty acid production by human faecal microflora
    • Velázquez M, Davies C, Marett R, Slavin JL, Feirtag JM. 2000. Effect of oligosaccharides and fibre substitutes on short-chain fatty acid production by human faecal microflora. Anaerobe 6(2):87-92.
    • (2000) Anaerobe , vol.6 , Issue.2 , pp. 87-92
    • Velázquez, M.1    Davies, C.2    Marett, R.3    Slavin, J.L.4    Feirtag, J.M.5
  • 49
    • 10844228836 scopus 로고    scopus 로고
    • Microplate-based filter paper assay to measure total cellulase activity
    • Xiao Z, Storms R, Tsang A. 2004. Microplate-based filter paper assay to measure total cellulase activity. Biotechnol Bioeng 88(7):832-837.
    • (2004) Biotechnol Bioeng , vol.88 , Issue.7 , pp. 832-837
    • Xiao, Z.1    Storms, R.2    Tsang, A.3
  • 50
    • 0029278685 scopus 로고
    • Characterization of the cell-wall polysaccharides of Arabidopsis thaliana leaves
    • Zablackis E, Huang J, Müller B, Darvill AG, Albersheim P. 1995. Characterization of the cell-wall polysaccharides of Arabidopsis thaliana leaves. Plant Physiol 107(4):1129-1138.
    • (1995) Plant Physiol , vol.107 , Issue.4 , pp. 1129-1138
    • Zablackis, E.1    Huang, J.2    Müller, B.3    Darvill, A.G.4    Albersheim, P.5
  • 51
    • 0029820907 scopus 로고    scopus 로고
    • Different inducibility of expression of the two xylanase genes xyn1 and xyn2 in Trichoderma reesei
    • Zeilinger S, Mach RL, Schindler M, Herzog P, Kubicek CP. 1996. Different inducibility of expression of the two xylanase genes xyn1 and xyn2 in Trichoderma reesei. J Biol Chem 271(41):25624-25629.
    • (1996) J Biol Chem , vol.271 , Issue.41 , pp. 25624-25629
    • Zeilinger, S.1    Mach, R.L.2    Schindler, M.3    Herzog, P.4    Kubicek, C.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.