Diversification of Chionochloa (Poaceae) and biogeography of the New Zealand Southern Alps

Journal of Biogeography

Volumn 37, Issue 2, 2010, Pages 379-392

  Pirie, Michael D ^a   Lloyd, Kelvin M ^b   Lee, William G ^b   Linder, H Peter ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b LANDCARE RESEARCH   (New Zealand)

Author keywords

Alpine; Biogeography; Chionochloa; Danthonioideae; Molecular dating; New Zealand; Phylogeny; Radiation; Southern Alps

Indexed keywords

ADAPTIVE RADIATION; ALPINE ENVIRONMENT; BIODIVERSITY; CHLOROPLAST; CRYPSIS; DNA; ENDEMISM; EXTINCTION; GLACIATION; GRASS; HYPOTHESIS TESTING; MOLECULAR ECOLOGY; PHYLOGENY; PHYTOGEOGRAPHY; PLEISTOCENE; SPECIES RICHNESS; TAXONOMY;

ALPS; NEW ZEALAND;

CHIONOCHLOA; DANTHONIOIDEAE; POACEAE; RANUNCULACEAE; RANUNCULUS;

EID: 74849114716     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2009.02205.x     Document Type: Article

References (67)

1. Barker, N.P., Galley, C., Verboom, G.A., Mafa, P., Gilbert, M. Linder, H.P. (2007) The phylogeny of the austral grass subfamily Danthonioideae: evidence from multiple data sets. Plant Systematics and Evolution, 264, 135 156.
2. Bell, C.D. Donoghue, M.J. (2005) Phylogeny and biogeography of Valerianaceae (Dipsacales) with special reference to the South American valerians. Organisms Diversity and Evolution, 5, 147 159.
3. Chamberlain, C.P. Poage, M.A. (2000) Reconstructing the paleotopography of mountain belts from the isotopic composition of authigenic minerals. Geology, 28, 115 118.
4. 4 photosynthesis in grasses. Current Biology, 18, 37 43.
5. Conert, H.J. (1975) Die Chionochloa-Arten von Australien und Neuguinea. Senckenbergiana Biologica, 56, 153 164.
6. Connor, H.E. (1967) Interspecific hybrids in Chionochloa (Gramineae). New Zealand Journal of Botany, 5, 3 16.
7. Connor, H.E. (1991) Chionochloa Zotov (Gramineae) in New Zealand. New Zealand Journal of Botany, 29, 219 282.
8. Connor, H.E. Edgar, E. (1974) Names and types in Cortaderia Stapf (Gramineae). Canadian Journal of Botany, 23, 595 605.
9. Connor, H.E. Lloyd, K.M. (2004) Species novae graminum Novae-Zelandiae II. Chionochloa nivifera (Danthonieae: Danthonioideae). New Zealand Journal of Botany, 42, 531 536.
10. Drummond, A. Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
11. Drummond, A.J., Ho, S.Y.W., Phillips, M.J. Rambaut, A. (2006) Relaxed phylogenetics and dating with confidence. PLoS Biology, 4, e88.
12. Fitch, W.M. (1971) Toward defining the course of evolution: minimum change for a specified tree topology. Systematic Zoology, 20, 406 416.
13. Ford, K.A., Ward, J.M., Smissen, R.D., Wagstaff, S. Breitwieser, I. (2007) Phylogeny and biogeography of Craspedia (Asteraceae: Gnaphalieae) based on ITS, ETS and psbA-trnH sequence data. Taxon, 56, 783 794.
14. Gehrke, B. Linder, H.P. (2009) The scramble for Africa: pan-temperate elements on the African high mountains. Proceedings of the Royal Society B: Biological Sciences, 276, 2657 2665.
15. Glenny, D. (2004) A revision of the genus Gentianella in New Zealand. New Zealand Journal of Botany, 42, 361 530.
16. Glenny, D. Wagstaff, S. (1997) Evolution and biogeography of New Zealand Anaphalis (Asteraceae: Gnaphalieae) inferred from rDNA sequences. New Zealand Journal of Botany, 35, 441 449.
17. Greaves, S.N.J., Chapple, D.G., Daugherty, C.H., Gleeson, D.M. Ritchie, P.A. (2008) Genetic divergences pre-date Pleistocene glacial cycles in the New Zealand speckled skink, Oligosoma infrapunctatum. Journal of Biogeography, 35, 853 864.
18. Gregory-Wodzicki, K.M. (2000) Uplift history of the Central and Northern Andes: a review. Bulletin of the Geological Society of America, 112, 1091 1105.
19. von Hagen, K.B. Kadereit, J.W. (2001) The phylogeny of Gentianella (Gentianaceae) and its colonization of the southern hemisphere as revealed by nuclear and chloroplast DNA sequence variation. Organisms Diversity and Evolution, 1, 61 79.
20. Heads, M. (1998) Biogeographic disjunction along the Alpine fault, New Zealand. Biological Journal of the Linnean Society, 63, 161 176.
21. Heads, M. Craw, R. (2004) The Alpine Fault biogeographic hypothesis revisited. Cladistics, 20, 184 190.
22. Heenan, P.B. Mitchell, A.D. (2003) Phylogeny, biogeography and adaptive radiation of Pachycladon (Brassicaceae) in the mountains of South Island, New Zealand. Journal of Biogeography, 30, 1737 1749.
23. Huelsenbeck, J.P. Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754 755.
24. Hughes, C. Eastwood, R. (2006) Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes. Proceedings of the National Academy of Sciences USA, 103, 10334 10339.
25. Knox, E.B. Palmer, J.D. (1995) Chloroplast DNA variation and the recent radiation of the giant senecios (Asteraceae) on the tall mountains of eastern Africa. Proceedings of the National Academy of Sciences USA, 92, 10349 10353.
26. Knox, E.B. Palmer, J.D. (1998) Chloroplast DNA evidence on the origin and radiation of the giant lobelias in eastern Africa. Systematic Botany, 23, 109 149.
27. Lee, D.E., Lee, W.G. Mortimer, N. (2001) Where and why have all the flowers gone? Depletion and turnover in the New Zealand Cenozoic angiosperm flora in relation to palaeogeography and climate. Australian Journal of Botany, 49, 341 356.
28. Lloyd, K.M., Bastow Wilson, J. Lee, W.G. (2003) Correlates of geographic range size in New Zealand Chionochloa (Poaceae) species. Journal of Biogeography, 30, 1751 1761.
29. Lloyd, K.M., Hunter, A.M., Orlovich, D.A., Draffin, S.J., Stewart, A.V. Lee, W.G. (2007) Phylogeny and biogeography of endemic Festuca (Poaceae) from New Zealand based on nuclear (ITS) and chloroplast (trnL-trnF) nucleotide sequences. Aliso, 23, 406 419.
30. Lockhart, P.J., McLenachan, P.A., Havell, D., Glenny, D., Huson, D. Jensen, U. (2001) Phylogeny, radiation, and transoceanic dispersal of New Zealand alpine buttercups: molecular evidence under split decomposition. Annals of the Missouri Botanical Garden, 88, 458 477.
31. Losos, J.B. Schluter, D. (2000) Analysis of an evolutionary species-area relationship. Nature, 408, 847 850.
32. Maddison, D.R. Maddison, W.P. (2005) MacClade. Sinauer Associates, Sunderland, MA.
33. Maddison, W.P. Maddison, D.R. (2006) Mesquite: a modular system for evolutionary analysis. Available at: http://mesquiteproject.org/ (accessed 3 March 2008).
34. McDowall, R.M. (2008) Process and pattern in the biogeography of New Zealand - a global microcosm? Journal of Biogeography, 35, 197 212.
35. McGlone, M.S. (1985) Plant biogeography and the late Cenozoic history of New Zealand. New Zealand Journal of Botany, 23, 723 749.
36. McGlone, M.S. (2005) Goodbye Gondwana. Journal of Biogeography, 32, 739 740.
37. McGlone, M.S., Duncan, R.P. Heenan, P.B. (2001) Endemism, species selection and the origin and distribution of the vascular plant flora of New Zealand. Journal of Biogeography, 28, 199 216.
38. Meudt, H.M. Bayly, M.J. (2008) Phylogeographic patterns in the Australasian genus Chionohebe (Veronica s.l., Plantaginaceae) based on AFLP and chloroplast DNA sequences. Molecular Phylogenetics and Evolution, 47, 319 338.
39. Meudt, H.M. Simpson, B.B. (2006) The biogeography of the austral, subalpine genus Ourisia (Plantaginaceae) based on molecular phylogenetic evidence: South American origin and dispersal to New Zealand and Tasmania. Biological Journal of the Linnean Society, 87, 479 513.
40. Müller, K. (2006) SeqState. Available at: http://systevol.nees.uni- bonn.de/software/SeqState (accessed 29 February 2008).
41. Pirie, M.D., Humphreys, A.M., Galley, C., Barker, N.P., Verboom, G.A., Orlovich, D., Draffin, S.J., Lloyd, K., Baeza, C.M., Negritto, M., Ruiz, E., Cota Sanchez, J.H., Reimer, E. Linder, H.P. (2008) A novel supermatrix approach improves resolution of phylogenetic relationships in a comprehensive sample of danthonioid grasses. Molecular Phylogenetics and Evolution, 48, 1106 1119.
42. Posada, D. Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
43. de Queiroz, A. (2005) The resurrection of oceanic dispersal in historical biogeography. Trends in Ecology and Evolution, 20, 68 73.
44. Rambaut, A. Drummond, A.J. (2003) Tracer. Available at: http://beast.bio.ed.ac.uk/Tracer (accessed 25 February 2008).
45. Raven, P.H. (1973) Evolution of the subalpine and alpine plant groups in New Zealand. New Zealand Journal of Botany, 11, 177 200.
46. Ree, R.H. Smith, S.A. (2008) Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology, 57, 4 14.
47. Ronquist, F. (1996) DIVA version 1.2. Distributed by the author. Available at: http://www.ebc.uu.se/systzoo/research/diva/diva.html (accessed 1 March 2008).
48. Ronquist, F. (2001) TreeFitter version 1.0. Available at: http://www.ebc.uu.se/systzoo/research/treefitter/treefitter.html (accessed 1 March 2008).
49. Sanderson, M.J. (2002a) Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Molecular Biology and Evolution, 19, 101 109.
50. Sanderson, M.J. (2002b) r8s, version 1.71. Available at: http://loco.biosci.arizona.edu/r8s/ (accessed 28 February 2008).
51. Simmons, M.P. Ochoterena, H. (2000) Gaps as characters in sequence-based phylogenetic analysis. Systematic Biology, 49, 369 381.
52. Smissen, R.D., Breitwieser, I. Ward, J.M. (2004) Phylogenetic implications of trans-specific chloroplast DNA sequence polymorphism in New Zealand Gnaphalieae (Asteraceae). Plant Systematics and Evolution, 249, 37 53.
53. Smith, J.M.B. Cleef, A.M. (1988) Composition and origins of the world's tropicalpine floras. Journal of Biogeography, 15, 631 645.
54. Stuessy, T.F., Jakubowsky, G., Gómez, R.S., Pfosser, M., Schlüter, P.M., Fer, T., Sun, B.-Y. Kato, H. (2006) Anagenetic evolution in island plants. Journal of Biogeography, 33, 1259 1265.
55. Swofford, D.L. (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer Associates, Sunderland, MA.
56. Trewick, S.A. (2008) DNA barcoding is not enough: Mismatch of taxonomy and genealogy in New Zealand grasshoppers (Orthoptera: Acrididae). Cladistics, 24, 240 254.
57. Wagstaff, S. Garnock-Jones, P.J. (1998) Evolution and biogeography of the Hebe complex (Scrophulariaceae) inferred from ITS sequences. New Zealand Journal of Botany, 36, 425 437.
58. Wagstaff, S.J. Wege, J. (2002) Patterns of diversification in New Zealand Stylidiaceae. American Journal of Botany, 89, 865 874.
59. Wagstaff, S.J., Bayly, M.J., Garnock-Jones, P.J. Albach, D.C. (2002) Classification, origin, and diversification of the New Zealand Hebes (Scrophulariaceae). Annals of the Missouri Botanical Garden, 89, 38 63.
60. Wardle, P. (1963) Evolution and distribution of the New Zealand Flora, as affected by Quaternary climates. New Zealand Journal of Botany, 1, 3 17.
61. Wardle, P. (1978) Origin of the New Zealand mountain flora, with special reference to trans-Tasman relationships. New Zealand Journal of Botany, 16, 535 550.
62. Wardle, P. (1991) Vegetation of New Zealand. Cambridge University Press, Cambridge.
63. Wikström, N., Savolainen, V. Chase, M.W. (2001) Evolution of the angiosperms: Calibrating the family tree. Proceedings of the Royal Society B: Biological Sciences, 1482, 2211 2220.
64. Winkworth, R.C., Grau, J., Robertson, A.W. Lockhart, P.J. (2002a) The origins and evolution of the genus Myosotis L. (Boraginaceae). Molecular Phylogenetics and Evolution, 24, 180 193.
65. Winkworth, R.C., Wagstaff, S.J., Glenny, D. Lockhart, P.J. (2002b) Plant dispersal N.E.W.S from New Zealand. Trends in Ecology and Evolution, 17, 514 520.
66. Winkworth, R.C., Wagstaff, S.J., Glenny, D. Lockhart, P.J. (2005) Evolution of the New Zealand mountain flora: origins, diversification and dispersal. Organisms Diversity and Evolution, 5, 237 247.
67. Zotov, V.D. (1963) Synopsis of the grass subfamily Arundinoideae in New Zealand. New Zealand Journal of Botany, 1, 78 136.