Plucking, pillaging and plundering proteomes with combinatorial peptide ligand libraries

Journal of Chromatography A

Volumn 1217, Issue 6, 2010, Pages 893-900

  Righetti, Pier Giorgio ^a   Boschetti, Egisto ^b   Zanella, Alberto ^c   Fasoli, Elisa ^a   Citterio, Attilio ^a  

^a POLITECNICO DI MILANO   (Italy)

^b Bio Rad   (France)

^c FONDAZIONE IRCCS CA GRANDA OSPEDALE MAGGIORE POLICLINICO   (Italy)

Author keywords

Elution systems; Ligand library; Low abundance proteome; Peptide ligands

Indexed keywords

CAPTURING SYSTEM; CYCLASES; CYSTEIC ACIDS; ELUTION SYSTEMS; GENE CODING; GENETIC DEFECTS; GLUTAMINYL; LIGAND LIBRARY; LOW-ABUNDANCE PROTEOME; NATIVE STRUCTURES; NOVEL PROTEINS; PEPTIDE LIGAND; PHYSIOLOGICAL SALINE; PROTEOMES; RED BLOOD CELL; SINGLE-STEP; SODIUM DODECYL SULPHATE; TYPE II;

BLOOD; FORMIC ACID; ISOMERS; LIBRARIES; ORGANIC ACIDS; PEPTIDES; SODIUM; THIOUREAS; UREA;

LIGANDS;

ACYLTRANSFERASE; ADENOSYLHOMOCYSTEINASE; COAT PROTEIN COMPLEX II; CYSTEIC ACID; CYTOPLASM PROTEIN; DODECYL SULFATE SODIUM; ERYTHROCYTE BAND 4.1 PROTEIN; FORMIC ACID; GAMMA GLOBIN; GLOBIN; GLUTAMINE CYCLASE; GLUTATHIONE SYNTHASE; HEMOGLOBIN; INITIATION FACTOR 2; LONG CHAIN FATTY ACID COENZYME A LIGASE; LYASE; MICROTUBULE ASSOCIATED PROTEIN; PEPTIDE LIBRARY; PEROXIREDOXIN; PROTEIN BCL 2; PROTEIN GLUTAMINE GAMMA GLUTAMYLTRANSFERASE 2; PROTEOME; SEC23B PROTEIN; SNAKE VENOM; SODIUM CHLORIDE; THIOUREA; TYROSINE TRANSFER RNA LIGASE; UNCLASSIFIED DRUG; UREA;

ACIDITY; ALKALINITY; COMBINATORIAL LIBRARY; CONGENITAL DYSERYTHROPOIETIC ANEMIA TYPE 2; ELUTION; ENZYME ANALYSIS; ENZYME LINKED IMMUNOSORBENT ASSAY; ERYTHROCYTE; GENE MUTATION; HUMAN; ISOELECTRIC FOCUSING; LIQUID CHROMATOGRAPHY; NONHUMAN; PH; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; PROTEOMICS; REVIEW; SNAKE; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ANIMALS; COMBINATORIAL CHEMISTRY TECHNIQUES; CYTOPLASM; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ERYTHROCYTES; HUMANS; HYDROGEN-ION CONCENTRATION; PEPTIDE LIBRARY; PROTEOMICS; SNAKE VENOMS;

EID: 74049135503     PISSN: 00219673     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chroma.2009.08.070     Document Type: Review

References (44)

1. Righetti P.G., Castagna A., Antonioli P., and Boschetti E. Electrophoresis 26 (2005) 297-319
2. Righetti P.G. Electrophoresis 25 (2004) 2111-2127
3. Penque D. Proteomics Clin. Appl. 3 (2009) 155-172
4. Furka A., Sebestyén F., Asgedom M., and Dibó G. Proceedings of 10th International Symposium on Medical Chemistry. Budapest, Hungary, August 15-19 (1988) 288
5. Lam K.S., Salmon S.E., Hersh E.M., Hruby V.J., Kazmierski W.M., and Knapp R.J. Nature 354 (1991) 82-84
6. Thulasiraman V., Lin S., Gheorghiu L., Lathrop J., Lomas L., Hammond D., and Boschetti E. Electrophoresis 26 (2005) 3561-3571
7. Castagna A., Cecconi D., Sennels L., Rappsilber J., Guerrier L., Fortis F., Boschetti E., Lomas L., and Righetti P.G. J. Proteome Res. 4 (2005) 1917-1930
8. Sennels L., Salek M., Lomas L., Boschetti E., Righetti P.G., and Rappsilber J. J. Proteome Res. 6 (2007) 4055-4062
9. Guerrier L., Thulasiraman V., Castagna A., Fortis F., Lin S., Lomas L., Righetti P.G., and Boschetti E. J. Chromatogr. B 833 (2006) 33-40
10. Guerrier L., Claverol S., Fortis F., Rinalducci S., Timperio A.M., Antonioli P., Jandrot-Perrus M., Boschetti E., and Righetti P.G. J. Proteome Res. 6 (2007) 4290-4303
11. Roux-Dalvai F., Gonzalez de Peredo A., Simò C., Guerrier L., Bouyssie D., Zanella A., Citterio A., Burlet-Schiltz O., Boschetti E., Righetti P.G., and Monsarrat B. Mol. Cell. Proteomics 7 (2008) 2254-2269
12. Guerrier L., Claverol S., Finzi L., Paye F., Fortis F., Boschetti E., and Housset C. J. Chromatogr. A 1176 (2007) 192-205
13. D'Ambrosio C., Arena S., Scaloni A., Fortis F., Boschetti E., Mendieta M.E., Citterio A., and Righetti P.G. J. Proteome Res. 7 (2008) 3461-3474
14. Farinazzo A., Restuccia U., Bachi A., Guerrier L., Fortis F., Boschetti E., Fasoli E., Citterio A., and Righetti P.G. J. Chromatogr. A 1216 (2009) 1241-1252
15. Fortis F., Guerrier L., Righetti P.G., Antonioli P., and Boschetti E. Electrophoresis 27 (2006) 3018-3027
16. Fortis F., Guerrier L., Areces L.B., Antonioli P., Hayes T., Carrick K., Hammond D., Boschetti E., and Righetti P.G. J. Proteome Res. 5 (2006) 2577-2585
17. Calvete J.J., Fasoli E., Sanz L., Boschetti E., and Righetti P.G. J. Proteome Res. 8 (2009) 3055-3067
18. Fasoli E., Pastorello E.A., Farioli L., Scibilia J., Aldini G., Carini M., Marocco A., Boschetti E., and Righetti P.G. J. Proteomics 72 (2009) 501-510
19. D'Amato A., Bachi A., Fasoli E., Boschetti E., Peltre G., Sénéchal H., and Righetti P.G. J. Proteome Res. 8 (2009) 3925-3936
20. Pasini E.M., Kirkegaard M., Mortensen P., Lutz H.U., Thomas A.W., and Mann M. Blood 108 (2006) 791-801
21. Righetti P.G., Boschetti E., Lomas L., and Citterio A. Proteomics 6 (2006) 3980-3992
22. Righetti P.G., and Boschetti E. FEBS J. 274 (2007) 897-905
23. Boschetti E., Lomas L., Citterio A., and Righetti P.G. J. Chromatogr. A 1153 (2007) 277-290
24. Boschetti E., Monsarrat B., and Righetti P.G. Curr. Proteomics 4 (2007) 198-208
25. Boschetti E., and Righetti P.G. BioTechniques 44 (2008) 663-665
26. Boschetti E., and Righetti P.G. J. Proteomics 71 (2008) 255-264
27. Righetti P.G., and Boschetti E. Mass Spectrom. Rev. 27 (2008) 596-608
28. Boschetti E., Bindschedler L.V., Tang C., Fasoli E., and Righetti P.G. J. Chromatogr. A 1216 (2009) 1215-1222
29. Boschetti E., and Righetti P.G. Proteomics 9 (2009) 1492-1510
30. Guerrier L., Righetti P.G., and Boschetti E. Nat. Protoc. 3 (2008) 883-890
31. Simó C., Bachi A., Cattaneo A., Guerrier L., Fortis F., Boschetti E., Podtelejnikov A., and Righetti P.G. Anal. Chem. 80 (2008) 3547-3556
32. Bachi A., Simó C., Restuccia U., Guerrier L., Fortis F., Boschetti E., Masseroli M., and Righetti P.G. Anal. Chem. 80 (2008) 3557-3565
33. van Holde K.E., Johnson W.C., and Ho P.S. Principles of Physical Biochemistry (1998), Prentice-Hall International, London pp. 2-15
34. Candiano G., Dimuccio V., Bruschi M., Santucci L., Gusmano R., Boschetti E., Righetti P.G., and Ghiggeri G.M. Electrophoresis 30 (2009) 2405-2411
35. Andrews A.T. Electrophoresis: Theory, Techniques and Biochemical and Clinical Applications (1986), Clarendon Press, Oxford pp. 117-144
36. Farinazzo A., Fasoli E., Kravchuk A.V., Candiano G., Aldini G., Regazzoni L., and Righetti P.G. J. Proteomics 72 (2009) 725-730
37. Calvete J.J. J. Proteomics 72 (2009) 121-126
38. Calvete J.J., Juárez P., and Sanz L. J. Mass Spectrom. 42 (2007) 1405-1414
39. McClintock B. Proc. Natl. Acad. Sci. U.S.A. 36 (1950) 344-355
40. Wickramasinghe S.N., and Wood W.G. Br. J. Haematol. 131 (2005) 431-446
41. Heimpel H. Ann. Hematol. 83 (2004) 613-621
42. Bianchi P., Fermo E., Vercellati C., Boschetti C., Barcellini W., Righetti P.G., and Zanella A. Hum. Mutat. 30 (2009) 1292-1298
43. J. Denecke, T. Marquardt, Biochim. Biophys. Acta, PMID: 19150496 [Epub ahead of print].
44. Hartwig S., Czibere A., Kotzka J., Paßlack W., Haas R., Eckel J., and Lehr S. Arch. Physiol. Biochem. 115 (2009) 155-160