On the interaction of rubidium and cesium mono-, strontium and barium bi-cations with DNA and RNA bases. A theoretical study

International Journal of Quantum Chemistry

Volumn 110, Issue 1, 2010, Pages 138-147

  Marino, Tiziana ^a   Mazzuca, Donatella ^a   Russo, Nino ^a   Toscano, Marirosa ^a   Grand, Andre ^b  

^a UNIVERSITY OF CALABRIA   (Italy)

^b CEA GRENOBLE   (France)

Author keywords

Alkaline and alkaline earth ions; DFT; DNA and RNA nucleobases; Metal ion affinity

Indexed keywords

A-DENSITY; ALKALINE AND ALKALINE EARTH IONS; ALKALINE METAL IONS; ALKALINE-EARTH IONS; DFT; MAIN GROUP; METAL COORDINATION; MOLECULAR COMPLEXES; NUCLEOBASES; PERIODIC TABLE; RELATIVE STABILITIES; STABLE METALS; THEORETICAL STUDY;

BARIUM; BINDING ENERGY; BINDING SITES; BIOCHEMISTRY; CESIUM; COMPLEXATION; COORDINATION REACTIONS; DNA; GENES; LIGHT METALS; METAL COMPLEXES; METAL IONS; METALS; POSITIVE IONS; PROBABILITY DENSITY FUNCTION; RNA; STRONTIUM; TRACE ANALYSIS;

CESIUM COMPOUNDS;

EID: 73849130623     PISSN: 00207608     EISSN: 1097461X     Source Type: Journal    
DOI: 10.1002/qua.22076     Document Type: Article

References (44)

1. Zhang, Y.; Huang K. J Mol Struct THEOCHEM, 2007, 812, 51.
2. Sigel, H.; Sigel A., Eds., Metal Ion in Biological Systems: Interactions of Metal Ions with Nucleotides, Nucleic Acids and their Constituent, Marcel Dekker, New York, 1996; Vol 32.
3. Adams, P. L.; Stahley, M. R.; Kosek, A. B.; Wang, J.; Strobel, S. A. Nature 2004, 430, 45.
4. Lippert, B. Coord Chem Rev 2000, 487, 200.
5. Frausto da Silva, J. J. R.; Williams, R. J. P. The Biological Chemistry of Elements. The Inorganic Chemistry of Life, Clarendon Press: Oxford, 1994.
6. Rodgers, M. T.; Armentrout, P. B. Mass Spectr Rev 2000, 19, 215.
7. Potaman, V. N.; Soyfer, V. N. J Biomol Struct Dyn 1994, 11,1035.
8. Guschlbauer, W.; Chantot, J. F.; Thiele, D. J Biomol Struct Dyn 1990, 8, 491.
9. Egli, M.; Gessner, R. V. Proc Natl Acad Sci USA 1995, 92, 180.
10. Anastassopoulou, J. J Mol Struct 2003, 19, 651.
11. Anwander, E. H. S.; Probst, M. M.; Rode, B. M. Biopolymers 1990, 29A, 757.
12. (a) Hobza, P.; Sandorfy, C. J Biomol Struct Dyn 1985, 2, 1245;
13. (b) Hobza, P.; Sandorfy, C. Biophys Chem 1984, 19, 201.
14. Schneider, B.; Kabeláč, M. JACS 1998, 120, 161.
15. Eichhorn, G. L.; Adv Inorg Biochem 1981, 3, 1.
16. Saenger, W. Principle of Nucleic Acid Structure; Springer-Verlag: New York, 1984.
17. Martin, R. B. Acc Chem Res 1985, 18, 32.
18. Sigel, H.; Chem Soc Rev 1993, 22, 255.
19. Lyubartsev, A. P.; Laaksonen, A. J Chem Phys 1999, 111, 11207.
20. Russo, N.; Toscano, M.; Grand, A. JACS, 2001, 123, 10272.
21. Russo, N; Toscano, M.; Grand, A. J Phys Chem B 2001, 105, 4735.
22. Jean, Y.-C.; Gao, Y.-G.; Wang, A. H. J Biochem 1993, 32, 381.
23. Parr, R. G.; Yang, W Density Functional Theory of Atoms and Molecules, Oxford Univ Press: New York, 1989.
24. Hohenberg, P.; Kohn, W. Phys Rev 1964, 136, B864.
25. Kohn, W.; Sham, L. J Phys Rev 1966, 145, 561.
26. Becke, A. D. J Chem Phys 1993, 98, 5648.
27. Lee, C.; Yang, W.; Parr, R.G. Phys Rev B 1988, 37, 785.
28. Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J. A., Jr.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. Gaussian 03, Revision A. 1, Gaussian, Inc.: Pittsburgh, PA, 2003.
29. Dolg, M.; Wedig, U.; Stoll, H.; Preuss, H. J Chem Phys 1997, 86, 866.
30. Russo, N.; Toscano M.; Grand, A. J Phys Chem A 2003, 107, 11533.
31. Russo, N.; Toscano M.; Grand, A. J Mass Spectrom 2003, 38, 265.
32. Marino, T.; Russo, N.; Toscano, M.; Grand, A. Int J Quantum Chem 2004, 98, 347.
33. Russo, N.; Sicilia, E.; Toscano M.; Grand, A. Int J Quantum Chem 2002, 90, 903.
34. Cerda, B. A.; Wesdemiotis, C. J Am Chem Soc 1996, 118, 11884.
35. Rodgers, M. T.; Armentrout, P. B. J Am Chem Soc 2000, 122, 8548.
36. Szczesniak, K.; Szczesniak, K.; Kwaitkowski, J.; Kubulat, K.; Person, W. B. J Am Chem Soc 1988, 110, 8319.
37. Nowak, M. I.; Lapinski, L.; Fullara, J. Spectrochim Acta 1989, A45, 229.
38. Brown, R. D.; Godfrey, P. D.; McNaughton, D.; Pierlot, A. P. J Am Chem Soc 1987, 111, 2308.
39. Dreyfus, M.; Bensaude, O.; Dodin, G.; Dubois, J. E. J Am Chem Soc 1976, 98, 2353.
40. Szczesniak. K; Szczesniak. M; Szajda, W.; Person, W. B.; Leszczynsky, J. J Can Chem 1991, 69, 1718.
41. Burda, J. H.; Šponer, J.; Hobza, P. J Phys Chem 1996, 100, 7250.
42. Šponer, J.; Sabat, M.; Burda, J. V.; Leszczynsky, J.; Hobza, P. J Phys Chem B 1999, 103, 2528.
43. Bleam, M. L.; Anderson, C. F.; Record, M. T. Proc Natl Acad Sci USA 1980, 77, 3085.
44. Hanlon, S.; Brudno, S.; Wu, T. T.; Wolf, B. Biochemistry 1975, 14, 1648.