Stereochemistry of binding of metal cations and water to a phosphate group

Journal of the American Chemical Society

Volumn 120, Issue 1, 1998, Pages 161-165

  Schneider, Bohdan ^a   Kabelá, Martin ^a  

^a J HEYROVSKÝ INSTITUTE OF PHYSICAL CHEMISTRY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

METAL ION; PHOSPHATE; WATER;

ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; HYDRATION; STEREOCHEMISTRY;

EID: 0032515407     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja972237+     Document Type: Article

References (36)

1. Sigel, H. In Metal - DNA Chemistry; Tullius, T. D., Ed.; ACS: Washington, D.C., 1989; Vol. 402, pp 159-204.
2. Eichhorn, G. L. Metal Ions in Genetic Information Transfer; Elsevier: New York, 1981.
3. Sigel, A.; Sigel, H. Interactions of Metal Ions with Nucleotides, Nucleic Acids, and Their Constituents; Marcel Dekker: New York, 1996; Vol. 32.
4. Cowan, J. A. In The Biological Chemistry of Magnesium; Cowan, J. A., Ed.; VCH: New York, 1995; pp 185-209.
5. Duguid, J. G.; Bloomfield, V. A.; Benevides, J. M.; Thomas, G. J., Jr. Biophys. J. 1995, 69, 2623-2641.
6. Fujimoto, B. S.; Miller, J. M.; Ribeiro, N. S.; Schurr, J. M. Biophys. J. 1994, 67, 304-308.
7. Trohalaki, S.; Frisch, H. L.; Lerman, L. S. Biophys. Chem. 1991, 40, 197-205.
8. Bloomfield, V. A. Current Opin. Struct. Biol. 1996, 6, 334-341.
9. Felsenfeld, G.; Miles, H. T. Annu. Rev. Biochem. 1967, 36, 407-448.
10. Anderson, C. F.; Record, M. T., Jr. Annu. Rev. Biophys. Chem. 1990, 19, 423-465.
11. Manning, G. S. Q. Rev. Biophys. 1978, 11, 179-246.
12. Porschke, D. In The Biological Chemistry of Magnesium; Cowan, J. A., Ed.; VCH: New York, 1995; pp 85-135.
13. Leikin, S.; Parsegian, V. A.; Rau, D. C. Annu. Rev. Phys. Chem. 1993, 44, 369-395.
14. Rau, D. C.; Parsegian, V. A. Biophys. J. 1992, 61, 246-259.
15. Rau, D. C.; Parsegian, V. A. Biophys. J. 1992, 61, 260-271.
16. Sletten, E.; Froystein, N. A. In Interactions of Metal Ions with Nucleotides, Nucleic Acids, and Their Constituents; Sigel, A., Sigel, H., Eds.; Marcel Dekker: New York, 1996; Vol. 32, pp 397-418.
17. Laughton, C. A.; Luque, F. J.; Orozco, M. J. Phys. Chem. 1995, 99, 11591-11599.
18. Deerfield, D. W., II; Pedersen, L. G. J. Biomol. Struct. Dyn. 1995, 13, 167-179.
19. Schneider, B.; Kabeláč, M.; Hobza, P. J. Am. Chem. Soc. 1996, 118, 12207-12217.
20. Young, M. A.; Jayaram, B.; Beveridge, D. L. J. Am. Chem. Soc. 1997, 119, 59-69.
21. Seeman, N. C.; Rosenberg, J. M.; Suddath, F. L.; Kim, J. J. P.; Rich, A. J. Mol. Biol. 1976, 104, 109-144.
22. Aoki, K. In Interactions of Metal Ions with Nucleotides, Nucleic Acids, and Their Constituents; Sigel, A., Sigel, H., Eds.; Marcel Dekker: New York, 1996; Vol. 32, pp 91-134.
23. Alexander, R. S.; Kanyo, Y. F.; Chirlian, L. E.; Christianson, D. W. J. Am. Chem. Soc. 1990, 112, 933-937.
24. Allen, F. H.; Bellard, S.; Brice, M. D.; Cartright, B. A.; Doubleday, A.; Higgs, H.; Hummelink, T.; Hummelink-Peters, B. G.; Kennard, O.; Motherwell, W. D. S.; Rodgers, J. R.; Watson, D. G. Acta Crystallogr. 1979, B35, 2331-2339.
25. Allen, F. H.; Davies, J. E.; Galloy, J. J.; Johnson, O.; Kennard, O.; Macrae, C. F.; Mitchell, E. M.; Mitchell, G. F.; Smith, J. M.; Watson, D. G. J. Chem. Inf. Comput. Sci. 1991, 31, 187-204.
26. Cohen, D.; Vadaparty, K.; Dickinson, B. Efficient algorithms for distance queries in macromolecular structure databases; University of Pittsburgh: Pittsburgh, 1995.
27. Schneider, B.; Cohen, D. M.; Schleifer, L.; Srinivasan, A. R.; Olson, W. K.; Berman, H. M. Biophys. J. 1993, 65, 2291-2303.
28. Schneider, B.; Berman, H. M. Biophys. J. 1995, 69, 2661-2669.
29. Brünger, A. T. X-PLOR Manual, version 3.1; Yale University: New Haven, CT, 1992.
30. Jones, T. A.; Zou, J.-Y.; Cowan, S. W.; Kjeldgaard, M. Acta Crystallogr. 1991, A47, 110-119.
31. Laing, L. G.; Draper, D. E. J. Mol. Biol. 1994, 237, 560-576.
32. Marcus, Y. Chem. Rev. 1988, 88, 1475-1498.
33. Carrell, C. J.; Carrell, H. L.; Erlebacher, J.; Glusker, J. P. J. Am. Chem. Soc. 1988, 110, 8651-8656.
34. Langlet, J.; Claverie, P.; Pullman, B.; Piazzola, D. Int. J. Quantum. Chem. 1979, 6, 409-437.
35. Westhof, E. Water and Biological Macromolecules; CRC: Boca Raton, 1993.
36. Schneider, B.; Patel, K.; Berman, H. M. Progr. Biophys. Mol. Biol. 1996, 65, 70-70.