메뉴 건너뛰기




Volumn 9, Issue 1, 2010, Pages 308-318

Simple method for quantitative analysis of N-linked glycoproteins in hepatocellular carcinoma specimens

Author keywords

Exclude peak list; HCC; iTRAQ; N linked glycopeptides; Quantitative analysis

Indexed keywords

ANTITHROMBIN III; ASPARAGINE; GLYCOPEPTIDE; GLYCOPROTEIN; VITRONECTIN;

EID: 73649124980     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr900649b     Document Type: Article
Times cited : (40)

References (46)
  • 1
    • 0034789412 scopus 로고    scopus 로고
    • The bittersweet promise of glycobiology
    • Dove, A. The bittersweet promise of glycobiology. Nat. Biotechnol. 2001, 19, 913-917.
    • (2001) Nat. Biotechnol , vol.19 , pp. 913-917
    • Dove, A.1
  • 2
    • 58149387521 scopus 로고    scopus 로고
    • Glyco-biomarkers: Potential determinants of cellular physiology and pathology
    • Alavi, A.; Axford, J. S. Glyco-biomarkers: potential determinants of cellular physiology and pathology. Dis. Markers 2008, 25, 193-205.
    • (2008) Dis. Markers , vol.25 , pp. 193-205
    • Alavi, A.1    Axford, J.S.2
  • 4
    • 46449102461 scopus 로고    scopus 로고
    • N-linked glycosylation of the liver cancer biomarker GP73
    • Norton, P. A.; Comunale, M. A.; Krakover, J.; Rodemich, L.; et al. N-linked glycosylation of the liver cancer biomarker GP73. J. Cell. Biochem. 2008, 104, 136-149.
    • (2008) J. Cell. Biochem , vol.104 , pp. 136-149
    • Norton, P.A.1    Comunale, M.A.2    Krakover, J.3    Rodemich, L.4
  • 5
    • 34548402664 scopus 로고    scopus 로고
    • Quantitative glycomics of human whole serum glycoproteins based on the standardized protocol for liberating N-glycans
    • Kita, Y.; Miura, Y.; Furukawa, J.; Nakano, M.; et al. Quantitative glycomics of human whole serum glycoproteins based on the standardized protocol for liberating N-glycans. Mol. Cell. Proteomics 2007, 6, 1437-1445.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1437-1445
    • Kita, Y.1    Miura, Y.2    Furukawa, J.3    Nakano, M.4
  • 6
    • 33750620940 scopus 로고    scopus 로고
    • Lectin capture strategies combined with mass spectrometry for the discovery of serum glycoprotein biomarkers
    • Drake, R. R.; Schwegler, E. E.; Malik, G.; Diaz, J.; et al. Lectin capture strategies combined with mass spectrometry for the discovery of serum glycoprotein biomarkers. Mol. Cell. Proteomics 2006, 5, 1957-1967.
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 1957-1967
    • Drake, R.R.1    Schwegler, E.E.2    Malik, G.3    Diaz, J.4
  • 7
    • 51049087078 scopus 로고    scopus 로고
    • Preparation of a highperformance multi-lectin affinity chromatography (HP-M-LAC) adsorbent for the analysis of human plasma glycoproteins
    • Kullolli, M.; Hancock, W. S.; Hincapie, M. Preparation of a highperformance multi-lectin affinity chromatography (HP-M-LAC) adsorbent for the analysis of human plasma glycoproteins. J. Sep. Sci. 2008, 31, 2733-2739.
    • (2008) J. Sep. Sci , vol.31 , pp. 2733-2739
    • Kullolli, M.1    Hancock, W.S.2    Hincapie, M.3
  • 8
    • 65249158488 scopus 로고    scopus 로고
    • Strategy for Glycoproteomics: Identification of Glyco-Alteration Using Multiple Glycan Profiling Tools (dagger)
    • Ito, H.; Kuno, A.; Sawaki, H.; Sogabe, M.; et al. Strategy for Glycoproteomics: Identification of Glyco-Alteration Using Multiple Glycan Profiling Tools (dagger). J. Proteome Res. 2009, 8, 1358-1367.
    • (2009) J. Proteome Res , vol.8 , pp. 1358-1367
    • Ito, H.1    Kuno, A.2    Sawaki, H.3    Sogabe, M.4
  • 9
    • 33751529259 scopus 로고    scopus 로고
    • High-sensitivity profiling of glycoproteins from human blood serum through multiple-lectin affinity chromatography and liquid chromatography/ tandem mass spectrometry
    • Madera, M.; Mechref, Y.; Klouckova, I.; Novotny, M. V. High-sensitivity profiling of glycoproteins from human blood serum through multiple-lectin affinity chromatography and liquid chromatography/ tandem mass spectrometry. J. Chromatogr., B: Anal. Technol. Biomed. Life Sci. 2007, 845, 121-137.
    • (2007) J. Chromatogr., B: Anal. Technol. Biomed. Life Sci , vol.845 , pp. 121-137
    • Madera, M.1    Mechref, Y.2    Klouckova, I.3    Novotny, M.V.4
  • 10
    • 0021891884 scopus 로고
    • Assembly of asparagine-linked oligosaccharides
    • Kornfeld, R.; Kornfeld, S. Assembly of asparagine-linked oligosaccharides. Annu. Rev. Biochem. 1985, 54, 631-664.
    • (1985) Annu. Rev. Biochem , vol.54 , pp. 631-664
    • Kornfeld, R.1    Kornfeld, S.2
  • 11
    • 0024562457 scopus 로고
    • Altered glycosylation of serum transferrin of patients with hepatocellular carcinoma
    • Yamashita, K.; Koide, N.; Endo, T.; Iwaki, Y.; Kobata, A. Altered glycosylation of serum transferrin of patients with hepatocellular carcinoma. J. Biol. Chem. 1989, 264, 2415-2423.
    • (1989) J. Biol. Chem , vol.264 , pp. 2415-2423
    • Yamashita, K.1    Koide, N.2    Endo, T.3    Iwaki, Y.4    Kobata, A.5
  • 12
    • 61849115201 scopus 로고    scopus 로고
    • Identification of N-glycosylation sites on secreted proteins of human hepatocellular carcinoma cells with a complementary proteomics approach
    • Cao, J.; Shen, C.; Wang, H.; Shen, H.; et al. Identification of N-glycosylation sites on secreted proteins of human hepatocellular carcinoma cells with a complementary proteomics approach. J. Proteome Res. 2009, 8, 662-672.
    • (2009) J. Proteome Res , vol.8 , pp. 662-672
    • Cao, J.1    Shen, C.2    Wang, H.3    Shen, H.4
  • 13
    • 63549111877 scopus 로고    scopus 로고
    • Detection of hepatocellular carcinoma using glycomic analysis
    • Goldman, R.; Ressom, H. W.; Varghese, R. S.; Goldman, L.; et al. Detection of hepatocellular carcinoma using glycomic analysis. Clin. Cancer Res. 2009, 15, 1808-1813.
    • (2009) Clin. Cancer Res , vol.15 , pp. 1808-1813
    • Goldman, R.1    Ressom, H.W.2    Varghese, R.S.3    Goldman, L.4
  • 14
    • 69449095848 scopus 로고    scopus 로고
    • Human plasma carboxylesterase 1, a novel serologic biomarker candidate for hepatocellular carcinoma
    • Na, K.; Lee, E. Y.; Lee, H. J.; Kim, K. Y.; Lee, H.; et al. Human plasma carboxylesterase 1, a novel serologic biomarker candidate for hepatocellular carcinoma. Proteomics 2009, 9, 3989-3999.
    • (2009) Proteomics , vol.9 , pp. 3989-3999
    • Na, K.1    Lee, E.Y.2    Lee, H.J.3    Kim, K.Y.4    Lee, H.5
  • 15
    • 0036613984 scopus 로고    scopus 로고
    • Proteomic analysis and molecular characterization of tissue ferritin light chain in hepatocellular carcinoma
    • Park, K. S.; Kim, H.; Kim, N. G.; Cho, S. Y.; et al. Proteomic analysis and molecular characterization of tissue ferritin light chain in hepatocellular carcinoma. Hepatology 2002, 35, 1459-1466.
    • (2002) Hepatology , vol.35 , pp. 1459-1466
    • Park, K.S.1    Kim, H.2    Kim, N.G.3    Cho, S.Y.4
  • 16
    • 0037049991 scopus 로고    scopus 로고
    • Proteomic alterations of the variants of human aldehyde dehydrogenase isozymes correlate with hepatocellular carcinoma
    • Park, K. S.; Cho, S. Y.; Kim, H.; Paik, Y. K. Proteomic alterations of the variants of human aldehyde dehydrogenase isozymes correlate with hepatocellular carcinoma. Int. J. Cancer 2002, 97, 261-265.
    • (2002) Int. J. Cancer , vol.97 , pp. 261-265
    • Park, K.S.1    Cho, S.Y.2    Kim, H.3    Paik, Y.K.4
  • 18
    • 44249099705 scopus 로고    scopus 로고
    • Dalpathado, D. S.; Desaire, H. Glycopeptide Anal. Mass Spectrom. 2008, 133, 731-738.
    • Dalpathado, D. S.; Desaire, H. Glycopeptide Anal. Mass Spectrom. 2008, 133, 731-738.
  • 19
    • 33947192955 scopus 로고    scopus 로고
    • Comparison of the methods for profiling glycoprotein glycans - HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study
    • Wada, Y.; Azadi, P.; Costello, C. E.; Dell, A.; et al. Comparison of the methods for profiling glycoprotein glycans - HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycobiology 2007, 17, 411-422.
    • (2007) Glycobiology , vol.17 , pp. 411-422
    • Wada, Y.1    Azadi, P.2    Costello, C.E.3    Dell, A.4
  • 20
    • 50449086901 scopus 로고    scopus 로고
    • Application of a peptide-based PF2D platform for quantitative proteomics in disease biomarker discovery
    • Lee, H. J.; Kang, M. J.; Lee, E. Y.; Cho, S. Y.; et al. Application of a peptide-based PF2D platform for quantitative proteomics in disease biomarker discovery. Proteomics 2008, 8, 3371-3381.
    • (2008) Proteomics , vol.8 , pp. 3371-3381
    • Lee, H.J.1    Kang, M.J.2    Lee, E.Y.3    Cho, S.Y.4
  • 21
    • 23944459569 scopus 로고    scopus 로고
    • Efficient prefractionation of low-abundance proteins in human plasma and construction of a two-dimensional map
    • Cho, S. Y.; Lee, E. Y.; Lee, J. S.; Kim, H. Y.; et al. Efficient prefractionation of low-abundance proteins in human plasma and construction of a two-dimensional map. Proteomics 2005, 5, 3386-3396.
    • (2005) Proteomics , vol.5 , pp. 3386-3396
    • Cho, S.Y.1    Lee, E.Y.2    Lee, J.S.3    Kim, H.Y.4
  • 22
    • 40549088497 scopus 로고    scopus 로고
    • Protein profiling of human plasma samples by two-dimensional electrophoresis
    • Cho, S. Y.; Lee, E. Y.; Kim, H. Y.; Kang, M. J.; et al. Protein profiling of human plasma samples by two-dimensional electrophoresis. Methods Mol. Biol. 2008, 428, 57-75.
    • (2008) Methods Mol. Biol , vol.428 , pp. 57-75
    • Cho, S.Y.1    Lee, E.Y.2    Kim, H.Y.3    Kang, M.J.4
  • 23
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner, M.; Ball, C. A.; Blake, J. A.; Botstein, D.; et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 2000, 25, 25-29.
    • (2000) Nat. Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4
  • 24
    • 39749099462 scopus 로고    scopus 로고
    • Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: Application to glyceraldehyde-3-phosphate dehydrogenase
    • Seo, J.; Jeong, J.; Kim, Y. M.; Hwang, N.; et al. Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: application to glyceraldehyde-3-phosphate dehydrogenase. J. Proteome Res. 2008, 7, 587-602.
    • (2008) J. Proteome Res , vol.7 , pp. 587-602
    • Seo, J.1    Jeong, J.2    Kim, Y.M.3    Hwang, N.4
  • 25
    • 67049117495 scopus 로고    scopus 로고
    • Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx)
    • Rudomin, E. J.; Carr, S, A.; Jaffe, J, D. Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx). J. Proteome Res. 2009, 8, 3154-3160.
    • (2009) J. Proteome Res , vol.8 , pp. 3154-3160
    • Rudomin, E.J.1    Carr, S.A.2    Jaffe, J.D.3
  • 26
    • 38449086882 scopus 로고    scopus 로고
    • Shotgun lipidomics by tandem mass spectrometry under data-dependent acquisition control
    • Schwudke, D.; Liebisch, G.; Herzog, R.; Schmitz, G.; Shevchenko, A. Shotgun lipidomics by tandem mass spectrometry under data-dependent acquisition control. Methods Enzymol. 2007, 433, 175-191.
    • (2007) Methods Enzymol , vol.433 , pp. 175-191
    • Schwudke, D.1    Liebisch, G.2    Herzog, R.3    Schmitz, G.4    Shevchenko, A.5
  • 27
    • 33846926966 scopus 로고    scopus 로고
    • Chen, X.; Sun, L.; Yu, Y.; Xue, Y.; Yang, P. Amino acid-coded tagging-based approaches in quantitative proteomics. Expert Rev. Proteomics 2007, 4, 25-37.
    • Chen, X.; Sun, L.; Yu, Y.; Xue, Y.; Yang, P. Amino acid-coded tagging-based approaches in quantitative proteomics. Expert Rev. Proteomics 2007, 4, 25-37.
  • 28
    • 66849113517 scopus 로고    scopus 로고
    • Zhao, Y.; Lee, W. N.; Xiao, G. G. Quantitative proteomics and biomarker discovery in human cancer. Expert Rev. Proteomics 2009, 6, 115-118.
    • Zhao, Y.; Lee, W. N.; Xiao, G. G. Quantitative proteomics and biomarker discovery in human cancer. Expert Rev. Proteomics 2009, 6, 115-118.
  • 29
    • 32044453084 scopus 로고    scopus 로고
    • Biomarker discovery from the plasma proteome using multidimensional fractionation proteomics
    • Lee, H. J.; Lee, E. Y.; Kwon, M. S.; Paik, Y. K. Biomarker discovery from the plasma proteome using multidimensional fractionation proteomics. Curr. Opin. Chem. Biol. 2006, 10, 42-49.
    • (2006) Curr. Opin. Chem. Biol , vol.10 , pp. 42-49
    • Lee, H.J.1    Lee, E.Y.2    Kwon, M.S.3    Paik, Y.K.4
  • 30
    • 33846548168 scopus 로고    scopus 로고
    • Mass spectrometric detection of tissue proteins in plasma
    • Zhang, H.; Liu, A. Y.; Loriaux, P.; Wollscheid, B.; et al. Mass spectrometric detection of tissue proteins in plasma. Mol. Cell Proteomics 2007, 6, 64-71.
    • (2007) Mol. Cell Proteomics , vol.6 , pp. 64-71
    • Zhang, H.1    Liu, A.Y.2    Loriaux, P.3    Wollscheid, B.4
  • 31
    • 33644518424 scopus 로고    scopus 로고
    • Clusterin plays an important role in hepatocellular carcinoma metastasis
    • Lau, S. H.; Sham, J. S.; Xie, D.; Tzang, C. H.; et al. Clusterin plays an important role in hepatocellular carcinoma metastasis. Oncogene 2006, 25, 1242-1250.
    • (2006) Oncogene , vol.25 , pp. 1242-1250
    • Lau, S.H.1    Sham, J.S.2    Xie, D.3    Tzang, C.H.4
  • 32
    • 19944429010 scopus 로고    scopus 로고
    • Identification of a new marker of hepatocellular carcinoma by serum protein profiling of patients with chronic liver diseases
    • Paradis, V.; Degos, F.; Dargère, D.; Pham, N.; et al. Identification of a new marker of hepatocellular carcinoma by serum protein profiling of patients with chronic liver diseases. Hepatology 2005, 41, 40-47.
    • (2005) Hepatology , vol.41 , pp. 40-47
    • Paradis, V.1    Degos, F.2    Dargère, D.3    Pham, N.4
  • 33
    • 67650732496 scopus 로고    scopus 로고
    • Quantitative analysis of phosphopeptides in search of the disease biomarker from the hepatocellular carcinoma specimen
    • Lee, H. J.; Na, K.; Kwon, M. S.; Kim, H. G.; Kim, K. S.; Paik, Y. K. Quantitative analysis of phosphopeptides in search of the disease biomarker from the hepatocellular carcinoma specimen. Proteomics 2009, 12, 3395-3408.
    • (2009) Proteomics , vol.12 , pp. 3395-3408
    • Lee, H.J.1    Na, K.2    Kwon, M.S.3    Kim, H.G.4    Kim, K.S.5    Paik, Y.K.6
  • 34
    • 10044232576 scopus 로고    scopus 로고
    • Overexpression of clusterin in human hepatocellular carcinoma
    • Kang, Y. K.; Hong, S. W.; Lee, H.; Kim, W. H. Overexpression of clusterin in human hepatocellular carcinoma. Hum. Pathol. 2004, 35, 1340-1346.
    • (2004) Hum. Pathol , vol.35 , pp. 1340-1346
    • Kang, Y.K.1    Hong, S.W.2    Lee, H.3    Kim, W.H.4
  • 35
    • 33845241732 scopus 로고    scopus 로고
    • Vitronectin in human hepatic tumours contributes to the recruitment of lymphocytes in an alpha v beta3-independent manner
    • Edwards, S.; Lalor, P. F.; Tuncer, C.; Adams, D. H. Vitronectin in human hepatic tumours contributes to the recruitment of lymphocytes in an alpha v beta3-independent manner. Br. J. Cancer 2006, 95, 1545-1554.
    • (2006) Br. J. Cancer , vol.95 , pp. 1545-1554
    • Edwards, S.1    Lalor, P.F.2    Tuncer, C.3    Adams, D.H.4
  • 36
    • 3943059566 scopus 로고    scopus 로고
    • Roles of N-linked glycans in the endoplasmic reticulum
    • Helenius, A.; Aebi, M. Roles of N-linked glycans in the endoplasmic reticulum. Annu. Rev. Biochem. 2004, 73, 1019-1049.
    • (2004) Annu. Rev. Biochem , vol.73 , pp. 1019-1049
    • Helenius, A.1    Aebi, M.2
  • 37
    • 34447326970 scopus 로고    scopus 로고
    • Changes in glycosylation of vitronectin modulate multimerization and collagen binding during liver regeneration
    • Sano, K.; Asanuma-Date, K.; Arisaka, F.; Hattori, S.; Ogawa, H. Changes in glycosylation of vitronectin modulate multimerization and collagen binding during liver regeneration. Glycobiology 2007, 17, 784-794.
    • (2007) Glycobiology , vol.17 , pp. 784-794
    • Sano, K.1    Asanuma-Date, K.2    Arisaka, F.3    Hattori, S.4    Ogawa, H.5
  • 38
    • 18444383363 scopus 로고    scopus 로고
    • Expression, regulation, and function of alpha V integrins in hepatocellular carcinoma: An in vivo and in vitro study
    • Nejjari, M.; Hafdi, Z.; Gouysse, G.; Fiorentino, M.; et al. Expression, regulation, and function of alpha V integrins in hepatocellular carcinoma: an in vivo and in vitro study. Hepatology 2002, 36, 418-426.
    • (2002) Hepatology , vol.36 , pp. 418-426
    • Nejjari, M.1    Hafdi, Z.2    Gouysse, G.3    Fiorentino, M.4
  • 39
    • 34247328263 scopus 로고    scopus 로고
    • Simplification of mass spectral analysis of acidic glycopeptides using GlycoPep ID
    • Irungu, J.; Go, E. P.; Dalpathado, D. S.; Desaire, H. Simplification of mass spectral analysis of acidic glycopeptides using GlycoPep ID. Anal. Chem. 2007, 79, 3065-3074.
    • (2007) Anal. Chem , vol.79 , pp. 3065-3074
    • Irungu, J.1    Go, E.P.2    Dalpathado, D.S.3    Desaire, H.4
  • 40
    • 0029066620 scopus 로고
    • Structures of the N-linked oligosaccharides on human plasma vitronectin
    • Ogawa, H.; Yoneda, A.; Seno, N.; Hayashi, M.; et al. Structures of the N-linked oligosaccharides on human plasma vitronectin. Eur. J. Biochem. 1995, 230, 994-1000.
    • (1995) Eur. J. Biochem , vol.230 , pp. 994-1000
    • Ogawa, H.1    Yoneda, A.2    Seno, N.3    Hayashi, M.4
  • 41
    • 0018072526 scopus 로고
    • Methylation analysis of the carbohydrate portion of fibronectin isolated from human plasma
    • Wrann, M. Methylation analysis of the carbohydrate portion of fibronectin isolated from human plasma. Biochem. Biophys. Res. Commun. 1978, 84, 269-274.
    • (1978) Biochem. Biophys. Res. Commun , vol.84 , pp. 269-274
    • Wrann, M.1
  • 42
    • 34347399590 scopus 로고    scopus 로고
    • High-throughput quantitative profiling of serum N-glycome by MALDI-TOF mass spectrometry and N-glycomic fingerprint of liver fibrosis
    • Kam, R. K.; Poon, T. C.; Chan, H. L.; Wong, N.; et al. High-throughput quantitative profiling of serum N-glycome by MALDI-TOF mass spectrometry and N-glycomic fingerprint of liver fibrosis. Clin. Chem 2007, 53, 1254-1263.
    • (2007) Clin. Chem , vol.53 , pp. 1254-1263
    • Kam, R.K.1    Poon, T.C.2    Chan, H.L.3    Wong, N.4
  • 44
    • 22444434861 scopus 로고    scopus 로고
    • Haemostatic abnormalities in liver disease: Could some haemostatic tests be useful as liver function tests?
    • Al Ghumlas, A. K.; Abdel Gader, A. G.; Al Faleh, F. Z. Haemostatic abnormalities in liver disease: could some haemostatic tests be useful as liver function tests? Blood Coagul. Fibrinolysis 2005, 16, 329-335.
    • (2005) Blood Coagul. Fibrinolysis , vol.16 , pp. 329-335
    • Al Ghumlas, A.K.1    Abdel Gader, A.G.2    Al Faleh, F.Z.3
  • 45
    • 0038699625 scopus 로고    scopus 로고
    • Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
    • Zhang, H.; Li, X. J.; Martin, D. B.; Aebersold, R. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 2003, 6, 660-666.
    • (2003) Nat. Biotechnol , vol.6 , pp. 660-666
    • Zhang, H.1    Li, X.J.2    Martin, D.B.3    Aebersold, R.4
  • 46
    • 33749145859 scopus 로고    scopus 로고
    • Multilectin affinity chromatography for characterization of multiple glycoprotein biomarker candidates in serum from breast cancer patients
    • Yang, Z.; Harris, L. E.; Palmer-Toy, D. E.; Hancock, W. S. Multilectin affinity chromatography for characterization of multiple glycoprotein biomarker candidates in serum from breast cancer patients. Clin. Chem. 2006, 52, 1897-1905.
    • (2006) Clin. Chem , vol.52 , pp. 1897-1905
    • Yang, Z.1    Harris, L.E.2    Palmer-Toy, D.E.3    Hancock, W.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.