메뉴 건너뛰기




Volumn 9, Issue 12, 2009, Pages 3395-3408

Quantitative analysis of phosphopeptides in search of the disease biomarker from the hepatocellular carcinoma specimen

Author keywords

Hepatocellular carcinoma; Phosphopeptides; Quantitative analysis; Stable isotope labeling with amino acids in cell culture; TiO2

Indexed keywords

ALPHA HS GLYCOPROTEIN; AMINO ACID; ARGININE; BIOLOGICAL MARKER; CARBON 13; LYSINE; OXYGEN 18; PHOSPHOPEPTIDE; PLECTIN 1; TITANIUM DIOXIDE; TRYPSIN; TUMOR MARKER; UNCLASSIFIED DRUG; WATER;

EID: 67650732496     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800943     Document Type: Article
Times cited : (58)

References (28)
  • 1
    • 34248640261 scopus 로고    scopus 로고
    • Highly selective enrichment of phosphorylated peptides using titanium dioxide
    • Thingholm, T. E., Jørgensen, T. J., Jensen, O. N., Larsen, M. R., Highly selective enrichment of phosphorylated peptides using titanium dioxide. Nat. Protoc. 2006, 1, 1929-1935.
    • (2006) Nat. Protoc , vol.1 , pp. 1929-1935
    • Thingholm, T.E.1    Jørgensen, T.J.2    Jensen, O.N.3    Larsen, M.R.4
  • 2
    • 39749186759 scopus 로고    scopus 로고
    • Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster
    • Pinkse, M. W. P., Mohammed, S., Gouw, J. W., venn Breukelen, B., Vos, H. R., Heck, A. J., Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster. J. Proteome Res. 2008, 7, 687-697.
    • (2008) J. Proteome Res , vol.7 , pp. 687-697
    • Pinkse, M.W.P.1    Mohammed, S.2    Gouw, J.W.3    venn Breukelen, B.4    Vos, H.R.5    Heck, A.J.6
  • 3
    • 34347216365 scopus 로고    scopus 로고
    • 2-based phosphopeptide enrichment for automated multidimensional liquid chromatography coupled to tandem mass spectrometry
    • 2-based phosphopeptide enrichment for automated multidimensional liquid chromatography coupled to tandem mass spectrometry. Anal. Chem. 2007, 79, 4666-4673.
    • (2007) Anal. Chem , vol.79 , pp. 4666-4673
    • Cantin, G.T.1    Shock, T.R.2    Park, S.K.3    Madhani, H.D.4    Yates, J.R.5
  • 4
    • 42349083169 scopus 로고    scopus 로고
    • Detection of multiphosphorylated peptides in LC-MS/MS analysis under low pH conditions
    • Choi, H., Lee, H. S., Park, Z. Y., Detection of multiphosphorylated peptides in LC-MS/MS analysis under low pH conditions. Anal. Chem. 2008, 80, 2007-2015.
    • (2008) Anal. Chem , vol.80 , pp. 2007-2015
    • Choi, H.1    Lee, H.S.2    Park, Z.Y.3
  • 5
    • 45549083940 scopus 로고    scopus 로고
    • Chip-based enrichment and nanoLC-MS/MS analysis of phosphopeptides from whole lysates
    • Mohammed, S., Kraiczek, K., Pinkse, M. W., Lemeer, S. et al., Chip-based enrichment and nanoLC-MS/MS analysis of phosphopeptides from whole lysates. J. Proteome Res. 2008, 7, 1565-1571.
    • (2008) J. Proteome Res , vol.7 , pp. 1565-1571
    • Mohammed, S.1    Kraiczek, K.2    Pinkse, M.W.3    Lemeer, S.4
  • 6
    • 55849127782 scopus 로고    scopus 로고
    • Enhanced detection and identification of multiply phosphorylated peptides using TiO2 enrichment in combination with MALDI TOF/TOF MS
    • Schmidt, A., Csaszar, E., Ammerer, G., Mechtler, K., Enhanced detection and identification of multiply phosphorylated peptides using TiO2 enrichment in combination with MALDI TOF/TOF MS. Proteomics 2008, 8, 4577-4592.
    • (2008) Proteomics , vol.8 , pp. 4577-4592
    • Schmidt, A.1    Csaszar, E.2    Ammerer, G.3    Mechtler, K.4
  • 7
    • 39749129202 scopus 로고    scopus 로고
    • A sulfated, phosphorylated 7 kDa secreted peptide characterized by direct analysis of cell culture media
    • Taylor, S. W., Sun, C., Hsieh, A., Andon, N. L., Ghosh, S. S., A sulfated, phosphorylated 7 kDa secreted peptide characterized by direct analysis of cell culture media. J. Proteome Res. 2008, 7, 795-802.
    • (2008) J. Proteome Res , vol.7 , pp. 795-802
    • Taylor, S.W.1    Sun, C.2    Hsieh, A.3    Andon, N.L.4    Ghosh, S.S.5
  • 8
    • 0037049991 scopus 로고    scopus 로고
    • Proteomic alterations of the variants of human aldehyde dehydrogenase isozymes correlate with hepatocellular carcinoma
    • Park, K. S., Cho, S. Y., Kim, H., Paik, Y. K., Proteomic alterations of the variants of human aldehyde dehydrogenase isozymes correlate with hepatocellular carcinoma. Int. J. Cancer 2002, 97, 261-265.
    • (2002) Int. J. Cancer , vol.97 , pp. 261-265
    • Park, K.S.1    Cho, S.Y.2    Kim, H.3    Paik, Y.K.4
  • 9
    • 0036613984 scopus 로고    scopus 로고
    • Proteomic analysis and molecular characterization of tissue ferritin light chain in hepatocellular carcinoma
    • Park, K. S., Kim, H., Kim, N. G., Cho, S. Y., Choi, K. H., Seoung, J. K., Paik, Y. K., Proteomic analysis and molecular characterization of tissue ferritin light chain in hepatocellular carcinoma. Hepatology 2002, 35, 1459-1466.
    • (2002) Hepatology , vol.35 , pp. 1459-1466
    • Park, K.S.1    Kim, H.2    Kim, N.G.3    Cho, S.Y.4    Choi, K.H.5    Seoung, J.K.6    Paik, Y.K.7
  • 10
    • 46449102461 scopus 로고    scopus 로고
    • N-linked glycosylation of the liver cancer biomarker GP73
    • Norton, P. A., Comunale, M. A., Krakover, J., Rodemich, L. et al., N-linked glycosylation of the liver cancer biomarker GP73. J. Cell Biochem. 2008, 104, 136-149.
    • (2008) J. Cell Biochem , vol.104 , pp. 136-149
    • Norton, P.A.1    Comunale, M.A.2    Krakover, J.3    Rodemich, L.4
  • 11
    • 33646271346 scopus 로고    scopus 로고
    • Increased expression and phosphorylation of liver glutamine synthetase in well-differentiated hepatocellular carcinoma tissues from patients infected with hepatitis C virus
    • Kuramitsu, Y., Harada, T., Takashima, M., Yokoyama, Y. et al., Increased expression and phosphorylation of liver glutamine synthetase in well-differentiated hepatocellular carcinoma tissues from patients infected with hepatitis C virus. Electrophoresis 2006, 27, 1651-1658.
    • (2006) Electrophoresis , vol.27 , pp. 1651-1658
    • Kuramitsu, Y.1    Harada, T.2    Takashima, M.3    Yokoyama, Y.4
  • 12
    • 23944459569 scopus 로고    scopus 로고
    • Efficient prefractionation of low-abundance proteins in human plasma and construction of a two-dimensional map
    • Cho, S. Y., Lee, E. Y., Lee, J. S., Kim, H. Y. et al., Efficient prefractionation of low-abundance proteins in human plasma and construction of a two-dimensional map. Proteomics 2005, 5, 3386-3396.
    • (2005) Proteomics , vol.5 , pp. 3386-3396
    • Cho, S.Y.1    Lee, E.Y.2    Lee, J.S.3    Kim, H.Y.4
  • 13
    • 40549088497 scopus 로고    scopus 로고
    • Protein profiling of human plasma samples by two-dimensional electrophoresis
    • Cho, S. Y., Lee, E. Y., Kim, H. Y., Kang, M. J. et al., Protein profiling of human plasma samples by two-dimensional electrophoresis. Methods Mol. Biol. 2008, 248, 57-76.
    • (2008) Methods Mol. Biol , vol.248 , pp. 57-76
    • Cho, S.Y.1    Lee, E.Y.2    Kim, H.Y.3    Kang, M.J.4
  • 15
    • 33644675365 scopus 로고    scopus 로고
    • Stable isotope labeling with amino acids in cell culture (SILAC) for studying dynamics of protein abundance and posttranslational modifications
    • Amanchy, R., Kalume, D. E., Pandey, A., Stable isotope labeling with amino acids in cell culture (SILAC) for studying dynamics of protein abundance and posttranslational modifications. Sci. STKE 2005, 267, 12-20.
    • (2005) Sci. STKE , vol.267 , pp. 12-20
    • Amanchy, R.1    Kalume, D.E.2    Pandey, A.3
  • 16
    • 50449086901 scopus 로고    scopus 로고
    • Application of a peptide-based PF2D platform for quantitative proteomics in disease biomarker discovery
    • Lee, H. J., Kang, M. J., Lee, E. Y., Cho, S. Y. et al., Application of a peptide-based PF2D platform for quantitative proteomics in disease biomarker discovery. Proteomics 2008, 8, 3371-3381.
    • (2008) Proteomics , vol.8 , pp. 3371-3381
    • Lee, H.J.1    Kang, M.J.2    Lee, E.Y.3    Cho, S.Y.4
  • 17
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The gene ontology consortium
    • Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat. Genet. 2000, 25, 25-29.
    • (2000) Nat. Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4
  • 18
    • 3242688830 scopus 로고    scopus 로고
    • Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESIMS/MS and titanium oxide precolumns
    • Pinkse, M. W., Uitto, P. M., Hilhorst, M. J., Ooms, B., Heck, A. J., Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESIMS/MS and titanium oxide precolumns. Anal. Chem. 2004, 76, 3935-3943.
    • (2004) Anal. Chem , vol.76 , pp. 3935-3943
    • Pinkse, M.W.1    Uitto, P.M.2    Hilhorst, M.J.3    Ooms, B.4    Heck, A.J.5
  • 21
    • 31544442216 scopus 로고    scopus 로고
    • Hepatoma-derived growth factor is a novel prognostic factor for hepatocellular carcinoma
    • Yoshida, K., Tomita, Y., Okuda, Y., Yamamoto, S. et al., Hepatoma-derived growth factor is a novel prognostic factor for hepatocellular carcinoma. Ann. Surg. Oncol. 2006, 13, 159-167.
    • (2006) Ann. Surg. Oncol , vol.13 , pp. 159-167
    • Yoshida, K.1    Tomita, Y.2    Okuda, Y.3    Yamamoto, S.4
  • 22
    • 0141452167 scopus 로고    scopus 로고
    • Expression of hepatoma-derived growth factor in hepatocellular carcinoma
    • Hu, T. H., Huang, C. C., Liu, L. F., Lin, P. R. et al., Expression of hepatoma-derived growth factor in hepatocellular carcinoma. Cancer 2003, 98, 1444-1456.
    • (2003) Cancer , vol.98 , pp. 1444-1456
    • Hu, T.H.1    Huang, C.C.2    Liu, L.F.3    Lin, P.R.4
  • 23
    • 17644361916 scopus 로고    scopus 로고
    • Rapid enrichment and analysis of yeast phosphoproteins using affinity chromatography, 2D-PAGE and peptide mass fingerprinting
    • Makrantoni, V., Antrobus, R., Botting, C. H., Coote, P. J., Rapid enrichment and analysis of yeast phosphoproteins using affinity chromatography, 2D-PAGE and peptide mass fingerprinting. Yeast 2005, 22, 401-414.
    • (2005) Yeast , vol.22 , pp. 401-414
    • Makrantoni, V.1    Antrobus, R.2    Botting, C.H.3    Coote, P.J.4
  • 24
    • 29244432748 scopus 로고    scopus 로고
    • Two-dimensional gel electrophoresis maps of the proteome and phosphoproteome of primitively cultured rat mesangial cells
    • Jiang, X. S., Tang, L. Y., Cao, X. J., Zhou, H. et al., Two-dimensional gel electrophoresis maps of the proteome and phosphoproteome of primitively cultured rat mesangial cells. Electrophoresis 2005, 26, 4540-4562.
    • (2005) Electrophoresis , vol.26 , pp. 4540-4562
    • Jiang, X.S.1    Tang, L.Y.2    Cao, X.J.3    Zhou, H.4
  • 25
    • 45149084714 scopus 로고    scopus 로고
    • Large-scale study of phosphoproteins involved in long-term potentiation in the rat dentate gyrus in vivo
    • Chardonnet, S., Le Marechal, P., Cheval, H., Le Caer, J. P., et al., Large-scale study of phosphoproteins involved in long-term potentiation in the rat dentate gyrus in vivo. Eur. J. Neurosci. 2008, 27, 2985-2998.
    • (2008) Eur. J. Neurosci , vol.27 , pp. 2985-2998
    • Chardonnet, S.1    Le Marechal, P.2    Cheval, H.3    Le Caer, J.P.4
  • 26
    • 36148975378 scopus 로고    scopus 로고
    • High-sensitivity analysis of specific peptides in complex samples by selected MS/MS ion monitoring and linear ion trap mass spectrometry: Application to biological studies
    • Jorge, I., Casas, E. M., Villar, M., Ortega-Pérez, I. et al., High-sensitivity analysis of specific peptides in complex samples by selected MS/MS ion monitoring and linear ion trap mass spectrometry: application to biological studies. J. Mass Spectrom. 2007, 42, 1391-1403.
    • (2007) J. Mass Spectrom , vol.42 , pp. 1391-1403
    • Jorge, I.1    Casas, E.M.2    Villar, M.3    Ortega-Pérez, I.4
  • 27
    • 0028135531 scopus 로고
    • Posttranslational processing of human alpha 2-HS glycoprotein (human fetuin). Evidence for the production of a phosphorylated single-chain form by hepatoma cells
    • Jahnen-Dechent, W., Trindl, A., Godovac-Zimmermann, J., M. uller-Esterl, W. Posttranslational processing of human alpha 2-HS glycoprotein (human fetuin). Evidence for the production of a phosphorylated single-chain form by hepatoma cells. Eur. J. Biochem. 1994, 226, 59-69.
    • (1994) Eur. J. Biochem , vol.226 , pp. 59-69
    • Jahnen-Dechent, W.1    Trindl, A.2    Godovac-Zimmermann, J.M.3    uller-Esterl, W.4
  • 28
    • 0035878884 scopus 로고    scopus 로고
    • Phosphorylation of human plasma alpha2-Heremans-77Schmid glycoprotein (human fetuin) in vivo
    • Haglund, A. C., Ek, B., Ek, P., Phosphorylation of human plasma alpha2-Heremans-77Schmid glycoprotein (human fetuin) in vivo. Biochem. J. 2001, 357, 437-445.
    • (2001) Biochem. J , vol.357 , pp. 437-445
    • Haglund, A.C.1    Ek, B.2    Ek, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.