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Volumn 2, Issue 1, 2009, Pages

LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CHROMOSOME 1; CHROMOSOME 18; CONTROLLED STUDY; GAMETE; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENETIC DATABASE; GENOMICS; GENOTYPE; HAPLOTYPE MAP; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 73649101321     PISSN: None     EISSN: 17560381     Source Type: Journal    
DOI: 10.1186/1756-0381-2-7     Document Type: Article
Times cited : (10)

References (30)
  • 1
    • 40749156234 scopus 로고    scopus 로고
    • Into the post-Hap map era
    • full-text. 18358338
    • Into the post-HapMap era. NE Morton, Adv Genet 2008 60 727 742 full-text 18358338
    • (2008) Adv Genet , vol.60 , pp. 727-742
    • Morton, N.E.1
  • 2
    • 43049146524 scopus 로고    scopus 로고
    • A HapMap harvest of insights into the genetics of common disease
    • 10.1172/JCI34772. 18451988
    • A HapMap harvest of insights into the genetics of common disease. TA Manolio LD Brooks FS Collins, J Clin Invest 2008 118 1590 1605 10.1172/JCI34772 18451988
    • (2008) J Clin Invest , vol.118 , pp. 1590-1605
    • Manolio, T.A.1    Brooks, L.D.2    Collins, F.S.3
  • 3
    • 0000951097 scopus 로고    scopus 로고
    • The evolutionary dynamics of complex polymorphisms
    • 10.2307/2405995
    • The Evolutionary Dynamics of Complex Polymorphisms. RC Lewontin Ki Kojima, Evolution 2001 14 458 472 10.2307/2405995
    • (2001) Evolution , vol.14 , pp. 458-472
    • Lewontin, R.C.1    Kojima, K.2
  • 4
    • 40749129960 scopus 로고    scopus 로고
    • Linkage and association: Basic concepts
    • full-text. 18358316
    • Linkage and association: basic concepts. IB Borecki MA Province, Adv Genet 2008 60 51 74 full-text 18358316
    • (2008) Adv Genet , vol.60 , pp. 51-74
    • Borecki, I.B.1    Province, M.A.2
  • 5
    • 43749105558 scopus 로고    scopus 로고
    • Linkage disequilibrium - Understanding the evolutionary past and mapping the medical future
    • 10.1038/nrg2361. 18427557
    • Linkage disequilibrium - understanding the evolutionary past and mapping the medical future. M Slatkin, Nat Rev Genet 2008 9 477 485 10.1038/nrg2361 18427557
    • (2008) Nat Rev Genet , vol.9 , pp. 477-485
    • Slatkin, M.1
  • 6
    • 27944434313 scopus 로고    scopus 로고
    • Genetic variability in a genomic region with long-range linkage disequilibrium reveals traces of a bottleneck in the history of the European population
    • 10.1007/s00439-005-0056-2. 16184404
    • Genetic variability in a genomic region with long-range linkage disequilibrium reveals traces of a bottleneck in the history of the European population. C Schmegner J Hoegel W Vogel G Assum, Hum Genet 2005 118 276 286 10.1007/s00439-005-0056-2 16184404
    • (2005) Hum Genet , vol.118 , pp. 276-286
    • Schmegner, C.1    Hoegel, J.2    Vogel, W.3    Assum, G.4
  • 7
    • 11144242955 scopus 로고    scopus 로고
    • Impact of population structure, effective bottleneck time, and allele frequency on linkage disequilibrium maps
    • 10.1073/pnas.0408251102. 15604137
    • Impact of population structure, effective bottleneck time, and allele frequency on linkage disequilibrium maps. W Zhang A Collins J Gibson WJ Tapper S Hunt P Deloukas DR Bentley NE Morton, Proc Natl Acad Sci USA 2004 101 18075 18080 10.1073/pnas.0408251102 15604137
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 18075-18080
    • Zhang, W.1    Collins, A.2    Gibson, J.3    Tapper, W.J.4    Hunt, S.5    Deloukas, P.6    Bentley, D.R.7    Morton, N.E.8
  • 9
    • 2642583283 scopus 로고    scopus 로고
    • Mapping complex disease loci in whole-genome association studies
    • 10.1038/nature02623. 15164069
    • Mapping complex disease loci in whole-genome association studies. CS Carlson MA Eberle L Kruglyak DA Nickerson, Nature 2004 429 446 452 10.1038/nature02623 15164069
    • (2004) Nature , vol.429 , pp. 446-452
    • Carlson, C.S.1    Eberle, M.A.2    Kruglyak, L.3    Nickerson, D.A.4
  • 10
    • 0029150074 scopus 로고
    • A comparison of linkage disequilibrium measures for fine-scale mapping
    • 10.1006/geno.1995.9003. 8666377
    • A comparison of linkage disequilibrium measures for fine-scale mapping. B Devlin N Risch, Genomics 1995 29 311 322 10.1006/geno.1995.9003 8666377
    • (1995) Genomics , vol.29 , pp. 311-322
    • Devlin, B.1    Risch, N.2
  • 11
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • 10.1038/nature04226. 16255080
    • A haplotype map of the human genome. International HapMap Consortium, Nature 2005 437 1299 1320 10.1038/nature04226 16255080
    • (2005) Nature , vol.437 , pp. 1299-1320
    • Hapmap Consortium, I.1
  • 12
    • 0018332021 scopus 로고
    • Inferences about linkage disequilibrium
    • 10.2307/2529947. 497335
    • Inferences about linkage disequilibrium. BS Weir, Biometrics 1979 35 235 254 10.2307/2529947 497335
    • (1979) Biometrics , vol.35 , pp. 235-254
    • Weir, B.S.1
  • 13
    • 0033794938 scopus 로고    scopus 로고
    • Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
    • 10.1086/303069. 10954684
    • Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data. D Fallin NJ Schork, Am J Hum Genet 2000 67 947 959 10.1086/303069 10954684
    • (2000) Am J Hum Genet , vol.67 , pp. 947-959
    • Fallin, D.1    Schork, N.J.2
  • 14
    • 13244271361 scopus 로고    scopus 로고
    • Determination of the differentially expressed genes in microarray experiments using local FDR
    • 10.1186/1471-2105-5-125. 15350197
    • Determination of the differentially expressed genes in microarray experiments using local FDR. J Aubert A Bar-Hen JJ Daudin S Robin, BMC Bioinformatics 2004 5 125 10.1186/1471-2105-5-125 15350197
    • (2004) BMC Bioinformatics , vol.5 , pp. 125
    • Aubert, J.1    Bar-Hen, A.2    Daudin, J.J.3    Robin, S.4
  • 15
    • 37149012278 scopus 로고    scopus 로고
    • Prioritized subset analysis: Improving power in genome-wide association studies
    • 10.1159/000109730. 17934316
    • Prioritized subset analysis: improving power in genome-wide association studies. C Li M Li EM Lange RM Watanabe, Hum Hered 2008 65 129 141 10.1159/000109730 17934316
    • (2008) Hum Hered , vol.65 , pp. 129-141
    • Li, C.1    Li, M.2    Lange, E.M.3    Watanabe, R.M.4
  • 16
    • 38049023107 scopus 로고    scopus 로고
    • Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation
    • 10.1002/gepi.20248. 17654612
    • Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation. JP Lewinger DV Conti JW Baurley TJ Triche DC Thomas, Genet Epidemiol 2007 31 871 882 10.1002/gepi.20248 17654612
    • (2007) Genet Epidemiol , vol.31 , pp. 871-882
    • Lewinger, J.P.1    Conti, D.V.2    Baurley, J.W.3    Triche, T.J.4    Thomas, D.C.5
  • 17
    • 40549124650 scopus 로고    scopus 로고
    • Gathering the gold dust: Methods for assessing the aggregate impact of small effect genes in genomic scans
    • 18229686
    • Gathering the gold dust: methods for assessing the aggregate impact of small effect genes in genomic scans. MA Province IB Borecki, Pac Symp Biocomput 2008 190 200 18229686
    • (2008) Pac Symp Biocomput , pp. 190-200
    • Province, M.A.1    Borecki, I.B.2
  • 18
    • 53649098737 scopus 로고    scopus 로고
    • Pathway analysis of seven common diseases assessed by genome-wide association
    • 10.1016/j.ygeno.2008.07.011. 18722519
    • Pathway analysis of seven common diseases assessed by genome-wide association. A Torkamani EJ Topol NJ Schork, Genomics 2008 92 265 272 10.1016/j.ygeno.2008.07.011 18722519
    • (2008) Genomics , vol.92 , pp. 265-272
    • Torkamani, A.1    Topol, E.J.2    Schork, N.J.3
  • 21
    • 33846692626 scopus 로고    scopus 로고
    • LdCompare: Rapid computation of single- and multiple-marker r2 and genetic coverage
    • 10.1093/bioinformatics/btl574. 17148510
    • LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage. K Hao X Di S Cawley, Bioinformatics 2007 23 252 254 10.1093/bioinformatics/btl574 17148510
    • (2007) Bioinformatics , vol.23 , pp. 252-254
    • Hao, K.1    Di, X.2    Cawley, S.3
  • 23
    • 58149412516 scopus 로고
    • Weighted Kappa - Nominal Scale Agreement with Provision for Scaled Disagreement or Partial Credit
    • 10.1037/h0026256. 19673146
    • Weighted Kappa - Nominal Scale Agreement with Provision for Scaled Disagreement Or Partial Credit. J Cohen, Psychological Bulletin 1968 70 213 10.1037/h0026256 19673146
    • (1968) Psychological Bulletin , vol.70 , pp. 213
    • Cohen, J.1
  • 27
    • 33749394003 scopus 로고    scopus 로고
    • Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome
    • 10.1371/journal.pgen.0020142. 16965180
    • Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome. MA Eberle MJ Rieder L Kruglyak DA Nickerson, PLoS Genet 2006 2 142 10.1371/journal.pgen.0020142 16965180
    • (2006) PLoS Genet , vol.2 , pp. 5142
    • Eberle, M.A.1    Rieder, M.J.2    Kruglyak, L.3    Nickerson, D.A.4
  • 28
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • 10.1093/bioinformatics/bth457. 15297300
    • Haploview: analysis and visualization of LD and haplotype maps. JC Barrett B Fry J Maller MJ Daly, Bioinformatics 2005 21 263 265 10.1093/bioinformatics/bth457 15297300
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 29
    • 0036844238 scopus 로고    scopus 로고
    • Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation
    • 10.1086/344398. 12384857
    • Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. N Wang JM Akey K Zhang R Chakraborty L Jin, Am J Hum Genet 2002 71 1227 1234 10.1086/344398 12384857
    • (2002) Am J Hum Genet , vol.71 , pp. 1227-1234
    • Wang, N.1    Akey, J.M.2    Zhang, K.3    Chakraborty, R.4    Jin, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.