메뉴 건너뛰기




Volumn 37, Issue 1, 2010, Pages 339-351

Exploring nonlinear feature space dimension reduction and data representation in breast CADx with Laplacian eigenmaps and t -SNE

Author keywords

Breast cancer; Computer aided diagnosis; Laplacian eigenmaps; Nonlinear dimension reduction; T SNE

Indexed keywords

COMPUTER AIDED DIAGNOSIS; DIMENSIONALITY REDUCTION; DISCRIMINANT ANALYSIS; FEATURE EXTRACTION; LAPLACE TRANSFORMS; MAGNETIC RESONANCE IMAGING; MAMMOGRAPHY; MAPPING; MARKOV CHAINS; MEDICAL IMAGING; NONLINEAR ANALYSIS; STOCHASTIC SYSTEMS; ULTRASONIC APPLICATIONS;

EID: 73649088617     PISSN: 00942405     EISSN: None     Source Type: Journal    
DOI: 10.1118/1.3267037     Document Type: Article
Times cited : (125)

References (44)
  • 1
    • 0042378381 scopus 로고    scopus 로고
    • Laplacian eigenmaps for dimensionality reduction and data representation
    • DOI 10.1162/089976603321780317
    • M. Belkin and P. Niyogi, " Laplacian eigenmaps for dimensionality reduction and data representation.," Neural Comput. 0899-7667 15, 1373-1396 (2003). 10.1162/089976603321780317 (Pubitemid 37049796)
    • (2003) Neural Computation , vol.15 , Issue.6 , pp. 1373-1396
    • Belkin, M.1    Niyogi, P.2
  • 2
    • 57249084011 scopus 로고    scopus 로고
    • Visualizing data using t -SNE
    • 1532-4435
    • L. van der Maaten and G. Hinton, " Visualizing data using t -SNE.," J. Mach. Learn. Res. 1532-4435 9, 2579-2605 (2008).
    • (2008) J. Mach. Learn. Res. , vol.9 , pp. 2579-2605
    • Van Der Maaten, L.1    Hinton, G.2
  • 3
    • 56749181253 scopus 로고    scopus 로고
    • Anniversary Paper: History and status of CAD and quantitative image analysis: The role of medical physics and AAPM
    • 0094-2405. 10.1118/1.3013555
    • M. L. Giger, H. Chan, and J. Boone, " Anniversary Paper: History and status of CAD and quantitative image analysis: The role of medical physics and AAPM.," Med. Phys. 0094-2405 35, 5799-5820 (2008). 10.1118/1.3013555
    • (2008) Med. Phys. , vol.35 , pp. 5799-5820
    • Giger, M.L.1    Chan, H.2    Boone, J.3
  • 4
    • 0031875382 scopus 로고    scopus 로고
    • Automated computerized classification of malignant and benign masses on digitized mammograms
    • DOI 10.1016/S1076-6332(98)80278-X
    • Z. Huo, M. L. Giger, C. J. Vyborny, D. E. Wolverton, R. A. Schmidt, and K. Doi, " Automated computerized classification of malignant and benign masses on digitized mammograms.," Acad. Radiol. 1076-6332 5, 155-168 (1998). 10.1016/S1076-6332(98)80278-X (Pubitemid 28372697)
    • (1998) Academic Radiology , vol.5 , Issue.3 , pp. 155-168
    • Huo, Z.1    Giger, M.L.2    Vyborny, C.J.3    Wolverton, D.E.4    Schmidt, R.A.5    Doi, K.6
  • 5
    • 0032129152 scopus 로고    scopus 로고
    • Automated seeded lesion segmentation on digital mammograms
    • PII S027800629808046X
    • M. A. Kupinski and M. Giger, " Automated seeded lesion segmentation on digital mammograms.," IEEE Trans. Med. Imaging 0278-0062 17, 510-517 (1998). 10.1109/42.730396 (Pubitemid 128747707)
    • (1998) IEEE Transactions on Medical Imaging , vol.17 , Issue.4 , pp. 510-517
    • Kupinski, M.A.1    Giger, M.L.2
  • 6
    • 0028857937 scopus 로고
    • Analysis of spiculation in the computerized classification of mammographic masses
    • 0094-2405. 10.1118/1.597626
    • Z. Huo, M. L. Giger, C. J. Vyborny, U. Bick, P. Lu, D. E. Wolverton, and R. A. Schmidt, " Analysis of spiculation in the computerized classification of mammographic masses.," Med. Phys. 0094-2405 22, 1569-1579 (1995). 10.1118/1.597626
    • (1995) Med. Phys. , vol.22 , pp. 1569-1579
    • Huo, Z.1    Giger, M.L.2    Vyborny, C.J.3    Bick, U.4    Lu, P.5    Wolverton, D.E.6    Schmidt, R.A.7
  • 7
    • 0035996428 scopus 로고    scopus 로고
    • Computerized lesion detection on breast ultrasound
    • DOI 10.1118/1.1485995
    • K. Drukker, M. L. Giger, K. Horsch, M. A. Kupinski, C. J. Vyborny, and E. B. Mendelson, " Computerized lesion detection on breast ultrasound.," Med. Phys. 0094-2405 29, 1438-1446 (2002). 10.1118/1.1485995 (Pubitemid 34774575)
    • (2002) Medical Physics , vol.29 , Issue.7 , pp. 1438-1446
    • Drukker, K.1    Giger, M.L.2    Horsch, K.3    Kupinski, M.A.4    Vyborny, C.J.5    Mendelson, E.B.6
  • 8
    • 33746617896 scopus 로고    scopus 로고
    • Automatic identification and classification of characteristic kinetic curves of breast lesions on DCE-MRI
    • DOI 10.1118/1.2210568
    • W. Chen, M. L. Giger, U. Bick, and G. M. Newstead, " Automatic identification and classification of characteristic kinetic curves of breast lesions on DCE-MRI.," Med. Phys. 0094-2405 33, 2878-2887 (2006). 10.1118/1.2210568 (Pubitemid 44154559)
    • (2006) Medical Physics , vol.33 , Issue.8 , pp. 2878-2887
    • Chen, W.1    Giger, M.L.2    Bick, U.3    Newstead, G.M.4
  • 9
    • 2442660323 scopus 로고    scopus 로고
    • Computerized interpretation of breast MRI: Investigation of enhancement-variance dynamics
    • DOI 10.1118/1.1695652
    • W. Chen, " Computerized interpretation of breast MRI: Investigation of enhancement-variance dynamics.," Med. Phys. 0094-2405 31, 1076 (2004). 10.1118/1.1695652 (Pubitemid 38656778)
    • (2004) Medical Physics , vol.31 , Issue.5 , pp. 1076-1082
    • Chen, W.1    Giger, M.L.2    Lan, L.3    Bick, U.4
  • 10
    • 2042525202 scopus 로고    scopus 로고
    • Computerized detection and classification of cancer on breast ultrasound
    • DOI 10.1016/S1076-6332(03)00723-2
    • K. Drukker, M. L. Giger, C. J. Vyborny, and E. B. Mendelson, " Computerized detection and classification of cancer on breast ultrasound.," Acad. Radiol. 1076-6332 11, 526-535 (2004). 10.1016/S1076-6332(03)00723-2 (Pubitemid 38533856)
    • (2004) Academic Radiology , vol.11 , Issue.5 , pp. 526-535
    • Drukker, K.1    Giger, M.L.2    Vyborny, C.J.3    Mendelson, E.B.4
  • 11
    • 0001397622 scopus 로고    scopus 로고
    • Computer-aided diagnosis of breast lesions in medical images
    • 1521-9615. 10.1109/5992.877391
    • M. Giger, " Computer-aided diagnosis of breast lesions in medical images.," Comput. Sci. Eng. 1521-9615 2, 39-45 (2000). 10.1109/5992.877391
    • (2000) Comput. Sci. Eng. , vol.2 , pp. 39-45
    • Giger, M.1
  • 12
    • 33845931065 scopus 로고    scopus 로고
    • Evaluation of information-theoretic similarity measures for content-based retrieval and detection of masses in mammograms
    • DOI 10.1118/1.2401667
    • G. D. Tourassi, B. Harrawood, S. Singh, J. Y. Lo, and C. E. Floyd, " Evaluation of information-theoretic similarity measures for content-based retrieval and detection of masses in mammograms.," Med. Phys. 0094-2405 34, 140-150 (2007). 10.1118/1.2401667 (Pubitemid 46035236)
    • (2007) Medical Physics , vol.34 , Issue.1 , pp. 140-150
    • Tourassi, G.D.1    Harrawood, B.2    Singh, S.3    Lo, J.Y.4    Floyd, C.E.5
  • 13
    • 35648984504 scopus 로고    scopus 로고
    • A dual-stage method for lesion segmentation on digital mammograms
    • DOI 10.1118/1.2790837
    • Y. Yuan, M. L. Giger, H. Li, K. Suzuki, and C. Sennett, " A dual-stage method for lesion segmentation on digital mammograms.," Med. Phys. 0094-2405 34, 4180-4193 (2007). 10.1118/1.2790837 (Pubitemid 350029640)
    • (2007) Medical Physics , vol.34 , Issue.11 , pp. 4180-4193
    • Yuan, Y.1    Giger, M.L.2    Li, H.3    Suzuki, K.4    Sennett, C.5
  • 16
    • 0001942829 scopus 로고
    • Neural networks and the bias/variance dilemma
    • 0899-7667. 10.1162/neco.1992.4.1.1
    • S. Geman, E. Bienenstock, and R. Doursat, " Neural networks and the bias/variance dilemma.," Neural Comput. 0899-7667 4, 1-58 (1992). 10.1162/neco.1992.4.1.1
    • (1992) Neural Comput. , vol.4 , pp. 1-58
    • Geman, S.1    Bienenstock, E.2    Doursat, R.3
  • 17
    • 0033863591 scopus 로고    scopus 로고
    • Feature selection and classifier performance in computer-aided diagnosis: The effect of finite sample size
    • DOI 10.1118/1.599017
    • B. Sahiner, H. Chan, N. Petrick, R. F. Wagner, and L. Hadjiiski, " Feature selection and classifier performance in computer-aided diagnosis: The effect of finite sample size.," Med. Phys. 0094-2405 27, 1509-1522 (2000). 10.1118/1.599017 (Pubitemid 30624246)
    • (2000) Medical Physics , vol.27 , Issue.7 , pp. 1509-1522
    • Sahiner, B.1    Chan, H.-P.2    Petrick, N.3    Wagner, R.F.4    Hadjiiski, L.5
  • 18
    • 0032703733 scopus 로고    scopus 로고
    • Feature selection with limited datasets
    • DOI 10.1118/1.598821
    • M. A. Kupinski and M. L. Giger, " Feature selection with limited datasets.," Med. Phys. 0094-2405 26, 2176-2182 (1999). 10.1118/1.598821 (Pubitemid 29498672)
    • (1999) Medical Physics , vol.26 , Issue.10 , pp. 2176-2182
    • Kupinski, M.A.1    Giger, M.L.2
  • 19
    • 35248813484 scopus 로고    scopus 로고
    • Joint feature selection and classification using a Bayesian neural network with automatic relevance determination priors: Potential use in CAD of medical imaging
    • Medical Imaging 2007: Computer-aided Diagnosis, edited by M. Giger and N. Karssemeijer [0277-786X, (2007)]
    • W. Chen, R. M. Zur, and M. L. Giger, " Joint feature selection and classification using a Bayesian neural network with automatic relevance determination priors: Potential use in CAD of medical imaging. " in Medical Imaging 2007: Computer-Aided Diagnosis, 2007, edited by, M. Giger, and, N. Karssemeijer, [Proc. SPIE 0277-786X 6514, 65141G-65141G-10 (2007)].
    • (2007) Proc. SPIE , vol.6514
    • Chen, W.1    Zur, R.M.2    Giger, M.L.3
  • 20
    • 0031707051 scopus 로고    scopus 로고
    • A genetic algorithm-based method for optimizing the performance of a computer-aided diagnosis scheme for detection of clustered microcalcifications in mammograms
    • DOI 10.1118/1.598341
    • M. A. Anastasio, H. Yoshida, R. Nagel, R. M. Nishikawa, and K. Doi, " A genetic algorithm-based method for optimizing the performance of a computer-aided diagnosis scheme for detection of clustered microcalcifications in mammograms.," Med. Phys. 0094-2405 25, 1613-1620 (1998). 10.1118/1.598341 (Pubitemid 28430881)
    • (1998) Medical Physics , vol.25 , Issue.9 , pp. 1613-1620
    • Anastasio, M.A.1    Yoshida, H.2    Nagel, R.3    Nishikawa, R.M.4    Doi, K.5
  • 21
    • 0035661275 scopus 로고    scopus 로고
    • Application of the mutual information criterion for feature selection in computer-aided diagnosis
    • DOI 10.1118/1.1418724
    • G. D. Tourassi, E. D. Frederick, M. K. Markey, and J. Floyd, " Application of the mutual information criterion for feature selection in computer-aided diagnosis.," Med. Phys. 0094-2405 28, 2394-2402 (2001). 10.1118/1.1418724 (Pubitemid 34031524)
    • (2001) Medical Physics , vol.28 , Issue.12 , pp. 2394-2402
    • Tourassi, G.D.1    Frederick, E.D.2    Markey, M.K.3    Floyd Jr., C.E.4
  • 22
    • 40849105031 scopus 로고    scopus 로고
    • Approaches to working in high-dimensional data spaces: Gene expression microarrays
    • 0007-0920. 10.1038/sj.bjc.6604207
    • Y. Wang, D. J. Miller, and R. Clarke, " Approaches to working in high-dimensional data spaces: Gene expression microarrays.," Br. J. Cancer 0007-0920 98, 1023-1028 (2008). 10.1038/sj.bjc.6604207
    • (2008) Br. J. Cancer , vol.98 , pp. 1023-1028
    • Wang, Y.1    Miller, D.J.2    Clarke, R.3
  • 23
    • 0001710505 scopus 로고
    • Analysis of a complex of statistical variables into principal components
    • 0022-0663. 10.1037/h0070888
    • H. Hotelling, " Analysis of a complex of statistical variables into principal components.," J. Educ. Psychol. 0022-0663 24, 498-520 (1933). 10.1037/h0070888
    • (1933) J. Educ. Psychol. , vol.24 , pp. 498-520
    • Hotelling, H.1
  • 25
    • 66749129162 scopus 로고    scopus 로고
    • Principal component analysis, classifier complexity, and robustness of sonographic breast lesion classification
    • Medical Imaging 2009: Computer-Aided Diagnosis, edited by M. Giger and N. Karssemeijer [0277-786X, (2009)]
    • K. Drukker, N. P. Gruszauskas, and M. L. Giger, " Principal component analysis, classifier complexity, and robustness of sonographic breast lesion classification.," in Medical Imaging 2009: Computer-Aided Diagnosis, 2009, edited by, M. Giger, and, N. Karssemeijer, [Proc. SPIE 0277-786X 7260, 72602B-72602B6 (2009)].
    • (2009) Proc. SPIE , vol.7260
    • Drukker, K.1    Gruszauskas, N.P.2    Giger, M.L.3
  • 26
    • 33745245049 scopus 로고    scopus 로고
    • Visual exploratory analysis of DCE-MRI data in breast cancer by dimensional data reduction: A comparative study
    • DOI 10.1016/j.bspc.2006.05.001, PII S1746809406000073
    • C. Varini, A. Degenhard, and T. W. Nattkemper, " Visual exploratory analysis of DCE-MRI data in breast cancer by dimensional data reduction: A comparative study.," Biomed. Signal Process. Control 1, 56-63 (2006). 10.1016/j.bspc.2006.05.001 1746-8094 (Pubitemid 43923704)
    • (2006) Biomedical Signal Processing and Control , vol.1 , Issue.1 , pp. 56-63
    • Varini, C.1    Degenhard, A.2    Nattkemper, T.W.3
  • 27
    • 34047099971 scopus 로고    scopus 로고
    • Distinguishing lesions from posterior acoustic shadowing in breast ultrasound via non-linear dimensionality reduction
    • DOI 10.1109/IEMBS.2006.260189, 4030338, 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'06
    • A. Madabhushi, P. Yang, M. Rosen, and S. Weinstein, " Distinguishing lesions from posterior acoustic shadowing in breast ultrasound via non-linear dimensionality reduction.," Engineering in Medicine and Biology Society, 2006. EMBS '06. 28th Annual International Conference of the IEEE 1, 3070-3073 (2006). 10.1109/IEMBS.2006.260189 1557-170X (Pubitemid 46520557)
    • (2006) Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings , pp. 3070-3073
    • Madabhushi, A.1    Peng, Y.2    Rosen, M.3    Weinstein, S.4
  • 28
    • 0037291502 scopus 로고    scopus 로고
    • Self-organizing map for cluster analysis of a breast cancer database
    • DOI 10.1016/S0933-3657(03)00003-4
    • M. K. Markey, J. Y. Lo, G. D. Tourassi, and C. E. Floyd, " Self-organizing map for cluster analysis of a breast cancer database.," Artif. Intell. Med. 0933-3657 27, 113-127 (2003). 10.1016/S0933-3657(03)00003-4 (Pubitemid 36294090)
    • (2003) Artificial Intelligence in Medicine , vol.27 , Issue.2 , pp. 113-127
    • Markey, M.K.1    Lo, J.Y.2    Tourassi, G.D.3    Floyd Jr., C.E.4
  • 29
    • 23644437143 scopus 로고    scopus 로고
    • Multimodality computerized diagnosis of breast lesions using mammography and sonography
    • DOI 10.1016/j.acra.2005.04.014, PII S1076633205003995
    • K. Drukker, K. Horsch, and M. L. Giger, " Multimodality computerized diagnosis of breast lesions using mammography and sonography.," Acad. Radiol. 1076-6332 12, 970-979 (2005). 10.1016/j.acra.2005.04.014 (Pubitemid 41116414)
    • (2005) Academic Radiology , vol.12 , Issue.8 , pp. 970-979
    • Drukker, K.1    Horsch, K.2    Giger, M.L.3
  • 30
    • 0029051116 scopus 로고
    • Computer-aided classification of mammographic masses and normal tissue: Linear discriminant analysis in texture feature space
    • 0031-9155. 10.1088/0031-9155/40/5/010
    • H. P. Chan, D. Wei, M. A. Helvie, B. Sahiner, D. D. Adler, M. M. Goodsitt, and N. Petrick, " Computer-aided classification of mammographic masses and normal tissue: Linear discriminant analysis in texture feature space.," Phys. Med. Biol. 0031-9155 40, 857-876 (1995). 10.1088/0031-9155/40/5/010
    • (1995) Phys. Med. Biol. , vol.40 , pp. 857-876
    • Chan, H.P.1    Wei, D.2    Helvie, M.A.3    Sahiner, B.4    Adler, D.D.5    Goodsitt, M.M.6    Petrick, N.7
  • 31
    • 41449091519 scopus 로고    scopus 로고
    • Classifier performance prediction for computer-aided diagnosis using a limited dataset
    • 0094-2405. 10.1118/1.2868757
    • B. Sahiner, H. Chan, and L. Hadjiiski, " Classifier performance prediction for computer-aided diagnosis using a limited dataset.," Med. Phys. 0094-2405 35, 1559 (2008). 10.1118/1.2868757
    • (2008) Med. Phys. , vol.35 , pp. 1559
    • Sahiner, B.1    Chan, H.2    Hadjiiski, L.3
  • 33
    • 0035437718 scopus 로고    scopus 로고
    • Ideal observer approximation using Bayesian classification neural networks
    • DOI 10.1109/42.952727, PII S027800620108661X
    • M. A. Kupinski, D. Edwards, M. Giger, and C. Metz, " Ideal observer approximation using Bayesian classification neural networks.," IEEE Trans. Med. Imaging 0278-0062 20, 886-899 (2001). 10.1109/42.952727 (Pubitemid 32992592)
    • (2001) IEEE Transactions on Medical Imaging , vol.20 , Issue.9 , pp. 886-899
    • Kupinski, M.A.1    Edwards, D.C.2    Giger, M.L.3    Metz, C.E.4
  • 35
    • 15244356703 scopus 로고    scopus 로고
    • Springer-Verlag, London, Berlin, Heidelberg
    • I. Nabney, Netlab (Springer-Verlag, London, Berlin, Heidelberg, 2002).
    • (2002) Netlab
    • Nabney, I.1
  • 37
    • 55449104028 scopus 로고    scopus 로고
    • Towards a theoretical foundation for Laplacian-based manifold methods
    • 0022-0000. 10.1016/j.jcss.2007.08.006
    • M. Belkin and P. Niyogi, " Towards a theoretical foundation for Laplacian-based manifold methods.," J. Comput. Syst. Sci. 0022-0000 74, 1289-1308 (2008). 10.1016/j.jcss.2007.08.006
    • (2008) J. Comput. Syst. Sci. , vol.74 , pp. 1289-1308
    • Belkin, M.1    Niyogi, P.2
  • 41
    • 34250192961 scopus 로고    scopus 로고
    • Reliable and Computationally Efficient Maximum-Likelihood Estimation of "Proper" Binormal ROC Curves
    • DOI 10.1016/j.acra.2007.03.012, PII S1076633207001778
    • L. L. Pesce and C. E. Metz, " Reliable and computationally efficient maximum-likelihood estimation of "proper" binormal ROC curves.," Acad. Radiol. 1076-6332 14, 814-829 (2007). 10.1016/j.acra.2007.03.012 (Pubitemid 46898850)
    • (2007) Academic Radiology , vol.14 , Issue.7 , pp. 814-829
    • Pesce, L.L.1    Metz, C.E.2
  • 42
    • 0018079655 scopus 로고
    • Basic principles of ROC analysis
    • 10.1016/S0001-2998(78)80014-2 0001-2998
    • C. E. Metz, " Basic principles of ROC analysis.," Semin. Nucl. Med. 8, 283-298 (1978). 10.1016/S0001-2998(78)80014-2 0001-2998
    • (1978) Semin. Nucl. Med. , vol.8 , pp. 283-298
    • Metz, C.E.1
  • 43
    • 0020083498 scopus 로고
    • The meaning and use of the area under a receiver operating characteristic (ROC) curve
    • 0033-8419
    • J. A. Hanley and B. J. McNeil, " The meaning and use of the area under a receiver operating characteristic (ROC) curve.," Radiology 0033-8419 143, 29-36 (1982).
    • (1982) Radiology , vol.143 , pp. 29-36
    • Hanley, J.A.1    McNeil, B.J.2
  • 44
    • 0031536511 scopus 로고    scopus 로고
    • 2+ bootstrap method
    • 0162-1459. 10.2307/2965703
    • 2+ bootstrap method.," J. Am. Stat. Assoc. 0162-1459 92, 548-560 (1997). 10.2307/2965703
    • (1997) J. Am. Stat. Assoc. , vol.92 , pp. 548-560
    • Efron, B.1    Tibshirani, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.