Competitive binding exchange between alkali metal ions (K+, Rb+, and Cs+) and Na+ ions bound to the dimeric quadruplex [d(G4T4G4)]2: A 23Na and 1HNMR study

Magnetic Resonance in Chemistry

Volumn 47, Issue 12, 2009, Pages 1036-1042

  Marincola, Flaminia Cesare ^a   Virno, Ada ^b   Randazzo, Antonio ^b   Mocci, Francesca ^a   Sabaa, Giuseppe ^a   Laia, Adolfo ^a  

^a UNIVERSITY OF CAGLIARI   (Italy)

^b UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

Alkali metal ions; G quadruplex; NMR

Indexed keywords

BINDING ENERGY; BINDING SITES; ION EXCHANGE; METAL IONS; POSITIVE IONS; TOPOLOGY;

ALKALI-METAL IONS; CATION EXCHANGES; COMPARATIVES STUDIES; COMPETITIVE BINDING; COMPETITIVE CATIONS; CS +; G-QUADRUPLEXES; NA+ IONS; PHOSPHATE GROUP;

TITRATION;

EID: 73349105591     PISSN: 07491581     EISSN: 1097458X     Source Type: Journal    
DOI: 10.1002/mrc.2509     Document Type: Article

References (62)

1. J. R. Williamson, M. K. Raghuraman, T. R. Cech, Cell 1989, 59, 871.
2. F. Aboul-ela, A. I. H. Murchie, D. M. J. Lilley, Nature 1992, 360, 280.
3. L. Petraccone, E. Erra, V. Esposito, A. Randazzo, L. Mayol, L. Nasti, G. Barone, C. Giancola, Biochemistry 2004, 43, 4877.
4. B. Saccà, L. Lacroix, J. L. Mergny, Nucleic Acids Res. 2005, 33, 1182.
5. M. Gellert, M. N. Lipsett, D. R. Davies, Proc. Natl Acad. Sci. USA 1962, 48, 2013.
6. J. R. Williamson, Annu. Rev. Biophys. Biomol. Struct. 1994, 23, 703.
7. A. Siddiqui-Jain, C. L. Grand, D. J. Bearss, L. H. Hurley, Proc.Natl Acad. Sci.USA 2002, 99, 11593.
8. T. Simonsson, P. Pecinka, M. Kubista, Nucleic Acids Res. 1998, 26, 1167.
9. F. Ishikawa, Biochem. Biophys. Res. Commun. 1997, 230, 1.
10. J. L. Mergny, P. Mailliet, F. Lavelle, J. F. Riou, A. Laoui, C. Helene, Anticancer Drug Des. 1999, 14, 327.
11. L. H. Hurley, R. T. Wheelhouse, D. Sun, S. M. Kerwin, M. Salazar, O. Y. Fedoroff, F. X. Han, H. Han, E. Izbicka, D. D. Von Hoff, Pharmacol. Ther. 2000, 85, 141.
12. P. Schultze, N. V. Hud, F. W. Smith, J. Feigon, Nucleic Acids Res. 1999, 27, 3018.
13. C. C. Hardin, T. Watson, M. Corregan, C. Bailey, Biochemistry 1992, 31, 833.
14. S. W. Blume, V. Guarcello, W. Zacharias, D. M. Miller, Nucleic Acids Res. 1997, 25, 617.
15. V. M. Marathias, P. H. Bolton, Biochemistry 1999, 38, 4355.
16. M. Cevec, J. Plavec, Biochemistry 2005, 44, 15238.
17. A. J. Dingley, R. D. Peterson, S. Grzesiek, J. Feigon, J. Am. Chem. Soc. 2005, 127, 14466.
18. J. R. Williamson, Curr. Opin. Struct. Biol. 1993, 3, 357.
19. W. Guschlbauer, J. F. Chantot, D. Thiele, J. Biomol. Struct. Dyn. 1990, 8, 491.
20. N. V. Hud, F. W. Smith, F. A. L. Anet, J. Feigon, Biochemistry 1996, 35, 15383.
21. J. D. Gu, J. Leszczynski, J. Phys. Chem. 2000, 104, 6308.
22. J. D. Gu, J. Leszczynski, J. Phys. Chem. 2002, 106, 529.
23. M. P. Horvath, S. C. Schultz, J.Mol. Biol. 2001, 310, 367.
24. S.Haider, G.N. Parkinson, S. Neidle, J.Mol. Biol. 2002, 320, 189.
25. M. H. P. Lee, G. N. Parkinson, P. Hazel, S. Neidle, J. Am. Chem. Soc. 2007, 129, 10106.
26. D. Rovnyak, M. Baldus, G. Wu, N. V.Hud, J. Feigon, R. G. Griffin, J.Am. Chem. Soc. 2000, 122, 11423.
27. G.Wu, A. Wong, Biochem. Biophys. Res. Commun. 2004, 323, 1139.
28. G. Wu, A. Wong, in NMR Spectroscopy of Biological Solids, (Ed.: A. Ramamoorthy), CRC Press: Boca Raton, 2006, pp 317.
29. S. Basu, A. A. Szewczak, M. Cocco, S. A. Strobel, J. Am. Chem. Soc. 2000, 122, 3240.
30. M. L. Gill, S. A. Strobel, J. P. Loria, J. Am. Chem. Soc. 2005, 127, 16723.
31. N. V. Hud, P. Schultze, J. Feigon, J. Am. Chem. Soc. 1998, 120, 6403.
32. N. V. Hud, P. Schultze, V. Sklenáo, J. Feigon, J. Mol. Biol. 1999, 285, 233.
33. P. Šket, M. Črnugelj, W. Koźmi ński, J. Plavec, Org. Biomol. Chem. 2004, 2, 1970.
34. P. Podbevšek, N. V. Hud, J. Plavec, Nucleic Acids Res. 2007, 35, 2554.
35. A.Wong, R. Ida, G.Wu, Biochem. Biophys. Res. Commun. 2005, 337, 363.
36. R. Ida, G. Wu, J. Am. Chem. Soc. 2008, 130, 3590.
37. M. Borzo, C. Detellier, P. Laszlo, A. Paris, J. Am. Chem. Soc. 1980, 102, 1124.
38. C. Detellier, P. Laszlo, J. Am. Chem. Soc. 1980, 102, 1135.
39. Q. Xu, H. Deng, W. H. Braunlin, Biochemistry 1993, 32, 13130.
40. H.Deng, W. H. Braunlin, J.Mol. Biol. 1996, 255, 476.
41. K. Snoussi, B. Halle, Biochemistry 2008, 47, 12219.
42. J. Reuben, M. Shporer, E. Gabbay, Proc. Natl. Acad. Sci. USA 1975, 72, 245.
43. M. L. Bleam, C. F. Anderson, M. T. Record, Proc. Natl. Acad. Sci. USA 1980, 77, 3085.
44. M. L. Bleam, C. F. Anderson, M. T. Record, Biochemistry 1983, 22, 5418.
45. W. H. Braunlin, L. Nordenskiöld, Eur. J. Biochem. 1984, 142, 133.
46. B. Halle, H. Wennerström, L. Piculell, J. Phys. Chem. 1984, 88, 2482.
47. P. Reimarrson, J. Parello, T. Drakenberg, H. Gustavsson, B. Lindman, FEBS Lett. 1979, 108, 439.
48. C. F. Anderson, M. T. Record, P. A. Hart, Biophys. Chem. 1978, 7, 301.
49. S. Padmanabhan, V. M. Brushaber, C. F. Anderson, M. T. Record, Biochemistry 1991, 30, 7550.
50. M. Casu, S. Puligheddu, G. Saba, F. Cesare Marincola, G. Orellana, A. Lai, J. Biomol. Struct. Dyn. 1997, 15, 37.
51. F. C. Marincola, M. Casu, G. Saba, A. Lai, P. Lincoln, B. Norden, Chem. Phys 1998, 236, 301.
52. F. C. Marincola, M. Casu, G. Saba, C. Manetti, A. Lai, Phys. Chem. Chem. Phys. 2000, 2, 2425.
53. F. C. Marincola, M. Casu, G. Saba, A. Lai, Chem. Phys. Chem. 2001, 2, 569.
54. A.Wong, Z. Yan, Y. Huang, G.Wu, Magn. Reson. Chem. 2008, 46, 30.
55. A. Wong, G.Wu, J. Am. Chem. Soc. 2003, 125, 13895.
56. F. W. Smith, J. Feigon, Biochemistry 1993, 32, 8682.
57. P. Šket, M. Ernugelj, J. Plavec, Nucleic Acids Res. 2005, 33, 3691.
58. F. C. Marincola, A. Virno, A. Randazzo, A. Lai, Nucleos. Nucleot. Nucl. 2007, 26, 1129.
59. C. Caceres, G. Wright, C. Gouyette, G. Parkinson, J. A. Subirana, Nucleic Acid Res. 2004, 32, 1097.
60. R. Ida, I. C. M. Kwan, G.Wu, Chem. Commun. 2007, 8, 795.
61. P. Schultze, F.W. Smith, J. Feigon, Structure 1994, 2, 221.
62. V. M. Marathis, K. Y.Wang, S. Kumar, T. Q. Pham, S. Swaminathan, P. H. Bolton, J.Mol. Biol. 1996, 260, 378.