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Volumn 58, Issue 4, 2009, Pages 737-752

Highly similar Prokaryotic communities of sunken wood at shallow and deep-sea sites across the oceans

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); CETACEA; PROKARYOTA;

EID: 73349103500     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-009-9538-4     Document Type: Article
Times cited : (32)

References (55)
  • 1
    • 0018462836 scopus 로고
    • Ecology and taxonomy of bacteria attaching to wood surfaces in a tropical harbor
    • Austin B, Allen DA, Zachary A, Belas MR, Colwell RR (1979) Ecology and taxonomy of bacteria attaching to wood surfaces in a tropical harbor. Can J Microbiol 25: 447-461.
    • (1979) Can J Microbiol , vol.25 , pp. 447-461
    • Austin, B.1    Allen, D.A.2    Zachary, A.3    Belas, M.R.4    Colwell, R.R.5
  • 2
    • 85046517795 scopus 로고    scopus 로고
    • The phylogenetic relationships of whale-fall vesicomyid clams based on mitochondrial COI DNA sequences
    • Baco AR, Smith CR, Peek AS, Roderick GK, Vrijenhoek RC (1999) The phylogenetic relationships of whale-fall vesicomyid clams based on mitochondrial COI DNA sequences. Mar Ecol Progr 1982: 37-147.
    • (1999) Mar Ecol Progr , vol.1982 , pp. 37-147
    • Baco, A.R.1    Smith, C.R.2    Peek, A.S.3    Roderick, G.K.4    Vrijenhoek, R.C.5
  • 3
    • 34548235824 scopus 로고    scopus 로고
    • Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: Insights from simulated microbial communities
    • Blackwood CB, Hudleston D, Zak DR, Buyer JS (2007) Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: insights from simulated microbial communities. Appl Environ Microbiol 73: 5276-5283.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5276-5283
    • Blackwood, C.B.1    Hudleston, D.2    Zak, D.R.3    Buyer, J.S.4
  • 4
    • 0009768495 scopus 로고
    • General introduction to the reports and list of deep-sea stations
    • Brunn AF (1959) General introduction to the reports and list of deep-sea stations. Galathea Report 1: 7-28.
    • (1959) Galathea Report , vol.1 , pp. 7-28
    • Brunn, A.F.1
  • 7
    • 0002551430 scopus 로고
    • Microbial succession on a wooden surface exposed to the sea
    • Cundell A, Mitchell R (1977) Microbial succession on a wooden surface exposed to the sea. Int Biodeterior Bull 13: 67-73.
    • (1977) Int Biodeterior Bull , vol.13 , pp. 67-73
    • Cundell, A.1    Mitchell, R.2
  • 8
    • 2942566096 scopus 로고    scopus 로고
    • Prokaryotic diversity and its limits: Microbial community structure in nature and implications for microbial ecology
    • Curtis TP, Sloan WT (2004) Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology. Curr Opin Microbiol 7: 221-226.
    • (2004) Curr Opin Microbiol , vol.7 , pp. 221-226
    • Curtis, T.P.1    Sloan, W.T.2
  • 9
    • 0034554845 scopus 로고    scopus 로고
    • Monitoring of activity dynamics of an anaerobic digester bacterial community using 16 S rRNA polymerase chain reaction-single-strand conformation polymorphism analysis
    • Delbès C, Moletta R, Godon JJ (2000) Monitoring of activity dynamics of an anaerobic digester bacterial community using 16 S rRNA polymerase chain reaction-single-strand conformation polymorphism analysis. Environ Microbiol 2: 506-515.
    • (2000) Environ Microbiol , vol.2 , pp. 506-515
    • Delbès, C.1    Moletta, R.2    Godon, J.J.3
  • 10
    • 0030990234 scopus 로고    scopus 로고
    • Evidence for the microbial basis of a chemoautotrophic invertebrate community at a whale fall on the deep seafloor: Bone-colonizing bacteria and invertebrate endosymbionts
    • Deming JW, Reysenbach AL, Macko SA, Smith CR (1997) Evidence for the microbial basis of a chemoautotrophic invertebrate community at a whale fall on the deep seafloor: bone-colonizing bacteria and invertebrate endosymbionts. Microsc Res Tech 37: 162-170.
    • (1997) Microsc Res Tech , vol.37 , pp. 162-170
    • Deming, J.W.1    Reysenbach, A.L.2    Macko, S.A.3    Smith, C.R.4
  • 11
    • 4243674581 scopus 로고
    • Réactions de l'écosystème benthique profond aux perturbations: Nouveaux résultats expérimentaux
    • L. Laubier and C. Monniot (Eds.), Brest (France): IFREMER
    • Desbruyères D, Deming JW, Dinet A, Khripounoff A (1985) Réactions de l'écosystème benthique profond aux perturbations: nouveaux résultats expérimentaux. In: Laubier L, Monniot C (eds) Peuplements Profonds du Golfe de Gascogne. IFREMER, Brest (France), pp 193-208.
    • (1985) Peuplements Profonds du Golfe de Gascogne , pp. 193-208
    • Desbruyères, D.1    Deming, J.W.2    Dinet, A.3    Khripounoff, A.4
  • 13
    • 0037664595 scopus 로고    scopus 로고
    • Fluorescently labeled oligonucleotide extension: A rapid and quantitative protocol for primer extension
    • Fekete RA, Miller MJ, Chattoraj DK (2003) Fluorescently labeled oligonucleotide extension: a rapid and quantitative protocol for primer extension. Biotechniques 35: 90-94.
    • (2003) Biotechniques , vol.35 , pp. 90-94
    • Fekete, R.A.1    Miller, M.J.2    Chattoraj, D.K.3
  • 16
    • 27844571900 scopus 로고    scopus 로고
    • Spatial and temporal scales of variation in bacterioplankton community structure in the NW Mediterranean Sea
    • Ghiglione JF, Larcher M, Lebaron P (2005) Spatial and temporal scales of variation in bacterioplankton community structure in the NW Mediterranean Sea. Aquat Microb Ecol 40: 229-240.
    • (2005) Aquat Microb Ecol , vol.40 , pp. 229-240
    • Ghiglione, J.F.1    Larcher, M.2    Lebaron, P.3
  • 17
    • 34547586997 scopus 로고    scopus 로고
    • Diel and Seasonal Variations in Abundance, Activity, and Community Structure of Particle-Attached and Free-Living Bacteria in NW Mediterranean Sea
    • Ghiglione JF, Mevel G, Pujo-Pay M, Mousseau L, Lebaron P, Goutx M (2007) Diel and Seasonal Variations in Abundance, Activity, and Community Structure of Particle-Attached and Free-Living Bacteria in NW Mediterranean Sea. Microb Ecol 54: 217-231.
    • (2007) Microb Ecol , vol.54 , pp. 217-231
    • Ghiglione, J.F.1    Mevel, G.2    Pujo-Pay, M.3    Mousseau, L.4    Lebaron, P.5    Goutx, M.6
  • 18
  • 19
    • 33745241822 scopus 로고    scopus 로고
    • Morphology, reproductive biology and genetic structure of the whale-fall and hydrothermal vent specialist, Bathykurila guaymasensis Pettibone, 1989 (Annelida: Polynoidae)
    • Glover AG, Goetze E, Dahlgren TG, Smith CR (2005) Morphology, reproductive biology and genetic structure of the whale-fall and hydrothermal vent specialist, Bathykurila guaymasensis Pettibone, 1989 (Annelida: Polynoidae). Mar Ecol 26: 223-234.
    • (2005) Mar Ecol , vol.26 , pp. 223-234
    • Glover, A.G.1    Goetze, E.2    Dahlgren, T.G.3    Smith, C.R.4
  • 20
    • 0020827029 scopus 로고
    • Bacterial degradation of lignified wood cell walls in anaerobic aquatic habitats
    • Holt DM, Jones EB (1983) Bacterial degradation of lignified wood cell walls in anaerobic aquatic habitats. Appl Environ Microbiol 46: 722-727.
    • (1983) Appl Environ Microbiol , vol.46 , pp. 722-727
    • Holt, D.M.1    Jones, E.B.2
  • 21
    • 33947194423 scopus 로고    scopus 로고
    • Comparison of CE-SSCP and DGGE for monitoring a complex microbial community remediating mine drainage
    • Hong H, Pruden A, Reardon K (2006) Comparison of CE-SSCP and DGGE for monitoring a complex microbial community remediating mine drainage. J Microbiol Meth 69: 52-64.
    • (2006) J Microbiol Meth , vol.69 , pp. 52-64
    • Hong, H.1    Pruden, A.2    Reardon, K.3
  • 22
    • 33846423556 scopus 로고    scopus 로고
    • Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: An ecological perspective
    • Jones SE, Shade AL, McMahon KD, Kent AD (2007) Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective. Appl Environ Microbiol 73: 659-662.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 659-662
    • Jones, S.E.1    Shade, A.L.2    McMahon, K.D.3    Kent, A.D.4
  • 23
    • 34548737680 scopus 로고    scopus 로고
    • Feast and famine-microbial life in the deep-sea bed
    • Jorgensen BB, Boetius A (2007) Feast and famine-microbial life in the deep-sea bed. Nat Rev Microbiol 5: 770-781.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 770-781
    • Jorgensen, B.B.1    Boetius, A.2
  • 24
    • 70449741718 scopus 로고    scopus 로고
    • Evaluating the wooden remnants of Tektas Burnu shipwreck
    • R. J. Koestler, V. H. Koestler, A. E. Charola, and F. E. Nieto-Fernandez (Eds.), New York: Metropolitan Museum of Art
    • Jurgens JA, Blanchette RA, Carlson DN (2003) Evaluating the wooden remnants of Tektas Burnu shipwreck. In: Koestler RJ, Koestler VH, Charola AE, Nieto-Fernandez FE (eds) Art, biology and conservation: biodeterioration of works of art. Metropolitan Museum of Art, New York, pp 390-407.
    • (2003) Art, Biology and Conservation: Biodeterioration of Works of Art , pp. 390-407
    • Jurgens, J.A.1    Blanchette, R.A.2    Carlson, D.N.3
  • 25
    • 33749990594 scopus 로고    scopus 로고
    • Deep-sea food bonanzas: Early Cenozoic whale-fall communities resemble wood-fall rather than seep communities
    • Kiel S, Goedert JL (2006) Deep-sea food bonanzas: early Cenozoic whale-fall communities resemble wood-fall rather than seep communities. Proc Biol Sci 273: 2625-2631.
    • (2006) Proc Biol Sci , vol.273 , pp. 2625-2631
    • Kiel, S.1    Goedert, J.L.2
  • 26
    • 0006669891 scopus 로고
    • The bathyal and abyssal Xylophaga (Pholadidae, Bivalvia)
    • Knudsen J (1961) The bathyal and abyssal Xylophaga (Pholadidae, Bivalvia). Galathea Report 5: 163-209.
    • (1961) Galathea Report , vol.5 , pp. 163-209
    • Knudsen, J.1
  • 28
    • 35148857127 scopus 로고    scopus 로고
    • Microbial diversity during cellulose decomposition in different forest stands: I. Microbial communities and environmental conditions
    • Kubartová A, Moukoumi J, Béguiristain T, Ranger J, Berthelin J (2007) Microbial diversity during cellulose decomposition in different forest stands: I. Microbial communities and environmental conditions. Microb Ecol 54: 393-405.
    • (2007) Microb Ecol , vol.54 , pp. 393-405
    • Kubartová, A.1    Moukoumi, J.2    Béguiristain, T.3    Ranger, J.4    Berthelin, J.5
  • 29
    • 0029786831 scopus 로고    scopus 로고
    • Non-radioactive method to study genetic profiles of natural bacterial communities by PCR-singlestrand-conformation polymorphism
    • Lee D, Zo Y, Kim S (1996) Non-radioactive method to study genetic profiles of natural bacterial communities by PCR-singlestrand-conformation polymorphism. Appl Environ Microbiol 62: 3112-3120.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3112-3120
    • Lee, D.1    Zo, Y.2    Kim, S.3
  • 30
    • 0028822931 scopus 로고
    • Cellulose degradation in anaerobic environments
    • Leschine SB (1995) Cellulose degradation in anaerobic environments. Ann Rev of Microbiol 49: 399-426.
    • (1995) Ann Rev of Microbiol , vol.49 , pp. 399-426
    • Leschine, S.B.1
  • 31
    • 0001207167 scopus 로고
    • Ecology of microbial cellulose degradation
    • Ljungdahl LG, Eriksson K-E (1985) Ecology of microbial cellulose degradation. Adv Microb Ecol 66: 237-299.
    • (1985) Adv Microb Ecol , vol.66 , pp. 237-299
    • Ljungdahl, L.G.1    Eriksson, K.-E.2
  • 32
    • 33644838781 scopus 로고    scopus 로고
    • Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity
    • Loisel P, Harmand J, Zemb O, Latrille E, Lobry C, Delgenes JP, Godon JJ (2006) Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity. Environ Microbiol 8: 720-731.
    • (2006) Environ Microbiol , vol.8 , pp. 720-731
    • Loisel, P.1    Harmand, J.2    Zemb, O.3    Latrille, E.4    Lobry, C.5    Delgenes, J.P.6    Godon, J.J.7
  • 33
    • 58149234973 scopus 로고    scopus 로고
    • Several deep-sea mussels and their associated symbionts are able to live both on wood and on whale falls
    • Lorion J, Duperron S, Gros O, Cruaud C, Samadi S (2009) Several deep-sea mussels and their associated symbionts are able to live both on wood and on whale falls. Proc Biol Sci 276: 177-185.
    • (2009) Proc Biol Sci , vol.276 , pp. 177-185
    • Lorion, J.1    Duperron, S.2    Gros, O.3    Cruaud, C.4    Samadi, S.5
  • 36
    • 0032812081 scopus 로고    scopus 로고
    • Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
    • Moeseneder MM, Arrieta JM, Muyzer G, Winter C, Herndl GJ (1999) Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl Environ Microbiol 522: 3518-3525.
    • (1999) Appl Environ Microbiol , vol.522 , pp. 3518-3525
    • Moeseneder, M.M.1    Arrieta, J.M.2    Muyzer, G.3    Winter, C.4    Herndl, G.J.5
  • 38
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA
    • Muyzer G, de Waal E, Uitterlinden A (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.2    Uitterlinden, A.3
  • 40
    • 57349154300 scopus 로고    scopus 로고
    • Contrasting microbial community assembly hypotheses: A reconciling tale from the Rio Tinto
    • Palacios C, Zettler E, Amils R, Amaral-Zettler L (2008) Contrasting microbial community assembly hypotheses: a reconciling tale from the Rio Tinto. PLoS ONE 3: e3853.
    • (2008) PLoS ONE , vol.3
    • Palacios, C.1    Zettler, E.2    Amils, R.3    Amaral-Zettler, L.4
  • 41
    • 35348933745 scopus 로고    scopus 로고
    • Multivariate analyses in microbial ecology
    • Ramette A (2007) Multivariate analyses in microbial ecology. FEMS Microbiol Ecol 62: 142-160.
    • (2007) FEMS Microbiol Ecol , vol.62 , pp. 142-160
    • Ramette, A.1
  • 42
    • 0006973492 scopus 로고
    • Reliable amplification of hyperthermophilic archaeal 16 S rRNA genes by PCR
    • F. Robb and A. Place (Eds.), New York: Cold Spring Harbor
    • Reysenbach A-L, Pace N (1995) Reliable amplification of hyperthermophilic archaeal 16 S rRNA genes by PCR. In: Robb F, Place A (eds) Thermophiles. Cold Spring Harbor, New York, pp 101-106.
    • (1995) Thermophiles , pp. 101-106
    • Reysenbach, A.-L.1    Pace, N.2
  • 43
    • 3442879505 scopus 로고    scopus 로고
    • Osedax: Bone-eating marine worms with dwarf males
    • Rouse GW, Goffredi SK, Vrijenhoek RC (2004) Osedax: bone-eating marine worms with dwarf males. Science 305: 668-671.
    • (2004) Science , vol.305 , pp. 668-671
    • Rouse, G.W.1    Goffredi, S.K.2    Vrijenhoek, R.C.3
  • 44
    • 0007698746 scopus 로고
    • Bacterial wood degradation studies under laboratory conditions and in lakes
    • Schmidt O, Nagashima Y, Liese W, Schmitt U (1987) Bacterial wood degradation studies under laboratory conditions and in lakes. Holzforschung 41: 137-140.
    • (1987) Holzforschung , vol.41 , pp. 137-140
    • Schmidt, O.1    Nagashima, Y.2    Liese, W.3    Schmitt, U.4
  • 45
    • 0242373495 scopus 로고    scopus 로고
    • Ecology of whale falls at the deep-sea floor
    • R. N. Gibson and R. J. A. Atkinson (Eds.), New York: Taylor & Francis
    • Smith CR, Baco AR (2003) Ecology of whale falls at the deep-sea floor. In: Gibson RN, Atkinson RJA (eds) Oceanography and Marine Biology: an Annual Review, vol 41. Taylor & Francis, New York, pp 311-354.
    • (2003) Oceanography and Marine Biology: An Annual Review , vol.41 , pp. 311-354
    • Smith, C.R.1    Baco, A.R.2
  • 47
    • 0028581182 scopus 로고
    • Canonical community ordination. Part I: Basic theory and linear methods
    • ter Braak CJF
    • ter Braak CJF (1994) Canonical community ordination. Part I: Basic theory and linear methods. Ecoscience 1: 127-140.
    • (1994) Ecoscience , vol.1 , pp. 127-140
  • 50
    • 0028995014 scopus 로고
    • Canonical correspondence analysis and related multivariate methods in aquatic ecology
    • ter Braak CJF, Verdonschot PFM (1995) Canonical correspondence analysis and related multivariate methods in aquatic ecology. Aquat Sci 57: 153-289.
    • (1995) Aquat Sci , vol.57 , pp. 153-289
    • ter Braak, C.J.F.1    Verdonschot, P.F.M.2
  • 52
    • 33947263749 scopus 로고    scopus 로고
    • A biogeographical perspective of the deep-sea hydrothermal vent fauna
    • Turnnicliffe V, McArthur AG, McHugh D (1998) A biogeographical perspective of the deep-sea hydrothermal vent fauna. Advances in Marine Biology 34: 353-442.
    • (1998) Advances in Marine Biology , vol.34 , pp. 353-442
    • Turnnicliffe, V.1    McArthur, A.G.2    McHugh, D.3
  • 53
    • 0000991701 scopus 로고
    • Macrofaunal utilization of plant remains in the deep sea
    • Wolff T (1979) Macrofaunal utilization of plant remains in the deep sea. Sarsia 64: 117-113.
    • (1979) Sarsia , vol.64 , pp. 117-113
    • Wolff, T.1
  • 54
    • 34548270865 scopus 로고    scopus 로고
    • SAFUM: Statistical analysis of SSCP fingerprints using PCA projections, dendrograms and diversity estimators
    • Zemb O (2007) SAFUM: statistical analysis of SSCP fingerprints using PCA projections, dendrograms and diversity estimators. Mol Ecol Notes 7: 767-770.
    • (2007) Mol Ecol Notes , vol.7 , pp. 767-770
    • Zemb, O.1
  • 55
    • 34547601738 scopus 로고    scopus 로고
    • Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: Toward a high-throughput method for microbial diversity studies in soil
    • Zinger L, Gury J, Giraud F, Krivobok S, Gielly L, Taberlet P, Geremia RA (2007) Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: Toward a high-throughput method for microbial diversity studies in soil. Microb Ecol 54: 203-216.
    • (2007) Microb Ecol , vol.54 , pp. 203-216
    • Zinger, L.1    Gury, J.2    Giraud, F.3    Krivobok, S.4    Gielly, L.5    Taberlet, P.6    Geremia, R.A.7


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