YY1's role in DNA methylation of Peg3 and Xist

Nucleic Acids Research

Volumn 37, Issue 17, 2009, Pages 5656-5664

  Kim, Jeong Do ^a   Kang, Keunsoo ^a   Kim, Joomyeong ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; PROTEIN PEG3; PROTEIN XIST; TRANSCRIPTION FACTOR YY1; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BLASTOCYST; DNA BINDING; DNA METHYLATION; EMBRYO; EMBRYO DEVELOPMENT; GENE CONSTRUCT; GERM CELL; MOUSE; NONHUMAN; OOCYTE DEVELOPMENT; PRIORITY JOURNAL; SPERMATOGENESIS; TRANSGENIC MOUSE;

ANIMALS; BLASTOCYST; DNA METHYLATION; FEMALE; GENE KNOCKDOWN TECHNIQUES; GERM CELLS; KRUPPEL-LIKE TRANSCRIPTION FACTORS; MALE; MICE; MICE, TRANSGENIC; OOGENESIS; RNA, UNTRANSLATED; SPERMATOGENESIS; YY1 TRANSCRIPTION FACTOR;

MUS;

EID: 73049104660     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp613     Document Type: Article

References (38)

1. Edwards, C.A. and Ferguson-Smith, A.C. (2007) Mechanisms regulating imprinted genes in clusters. Curr. Opin. Cell Biol., 19, 281-289.
2. Ideraabdullah, F.Y., Vigneau, S. and Bartolomei, M.S. (2008) Genomic imprinting mechanisms in mammals. Mutat. Res., 647, 77-85.
3. Reik, W. (2007) Stability and flexibility of epigenetic gene regulation in mammalian development. Nature, 447, 425-432.
4. Sasaki, H. and Matsui, Y. (2008) Epigenetic events in mammalian germ-cell development: reprogramming and beyond. Nat. Rev. Genet., 9, 29-140.
5. Jelinic, P., Stehle, J.C. and Shaw, P. (2006) The testis-specific factor CTCFL cooperates with the protein methyltransferase PRMT7 in H19 imprinting control region methylation. PLoS Biol., 4, e355.
6. Nakamura, T., Arai, Y., Umehara, H., Masuhara, M., Kimura, T., Taniguchi, H., Sekimoto, T., Ikawa, M., Yoneda, Y., Okabe, M. et al. (2006) PGC7/Stella protects against DNA demethylation in early embryogenesis. Nat. Cell Biol., 9, 64-71.
7. Mackay, D.J., Callaway, J.L., Marks, S.M., White, H.E., Acerini, C.L., Boonen, S.E., Dayanikli, P., Firth, H.V., Goodship, J.A., Haemers, A.P. et al. (2008) Hypomethylation of multiple imprinted loci in individuals with transient neonatal diabetes is associated with mutations in ZFP57. Nat. Genet., 40, 949-951.
8. Li, X., Ito, M., Zhou, F., Youngson, N., Zuo, X., Leder, P. and Ferguson-Smith, A.C. (2008) A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. Dev. Cell, 15, 547-557.
9. Bell, A.C. and Felsenfeld, G. (2000) Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Nature, 405, 482-485.
10. Hark, A.T., Schoenherr, C.J., Katz, D.J., Ingram, R.S., Levorse, J.M. and Tilghman, S.M. (2000) CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus. Nature, 405, 486-489.
11. Fitzpatrick, G.V., Pugacheva, E.M., Shin, J.Y., Abdullaev, Z., Yang, Y., Khatod, K., Lobanenkov, V.V. and Higgins, M.J. (2007) Allele-specific binding of CTCF to the multipartite imprinting control region KvDMR1. Mol. Cell Biol., 27, 2636-2647.
12. Yoon, B., Herman, H., Hu, B., Park, Y.J., Lindroth, A., Bell, A., West, A.G., Chang, Y., Stablewski, A., Piel, J.C. et al. (2005) Rasgrf1 imprinting is regulated by a CTCF-dependent methylation-sensitive enhancer blocker. Mol. Cell Biol., 25, 11184-11190.
13. Hikichi, T., Kohda, T., Kaneko-Ishino, T. and Ishino, F. (2003) Imprinting regulation of the murine Meg1/Grb10 and human GRB10 genes; roles of brain-specific promoters and mouse-specific CTCF-binding sites. Nucleic Acids Res., 31, 1398-1406.
14. Takada, S., Paulsen, M., Tevendale, M., Tsai, C.E., Kelsey, G., Cattanach, B.M. and Ferguson-Smith, A.C. (2002) Epigenetic analysis of the Dlk1-Gtl2 imprinted domain on mouse chromosome 12: implications for imprinting control from comparison with Igf2-H19. Hum. Mol. Genet., 11, 77-86.
15. Chao, W., Huynh, K.D., Spencer, R.J., Davidow, L.S. and Lee, J.T. (2002) CTCF, a candidate trans-acting factor for X-inactivation choice. Science, 295, 345-347.
16. Navarro, P., Page, D.R., Avner, P. and Rougeulle, C. (2006) Tsix-mediated epigenetic switch of a CTCF-flanked region of the Xist promoter determines the Xist transcription program. Genes Dev., 20, 2787-2792.
17. Pugacheva, E.M., Tiwari, V.K., Abdullaev, Z., Vostrov, A.A., Flanagan, P.T., Quitschke, W.W., Loukinov, D.I., Ohlsson, R. and Lobanenkov, V.V. (2005) Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation. Hum. Mol. Genet., 14, 953-965.
18. Kim, J., Kollhoff, A., Bergmann, A. and Stubbs, L. (2003) Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3. Hum. Mol. Genet., 12, 233-245.
19. Kim, J.D., Hinz, A.K., Bergmann, A., Huang, J.M., Ovcharenko, I., Stubbs, L. and Kim, J. (2006) Identification of clustered YY1 binding sites in imprinting control regions. Genome Res., 16, 901-911.
20. Schoenherr, C.J., Levorse, J.M. and Tilghman, S.M. (2003) CTCF maintains differential methylation at the Igf2/H19 locus. Nat. Genet., 33, 66-69.
21. Engel, N., West, A.G., Felsenfeld, G. and Bartolomei, M.S. (2004) Antagonism between DNA hypermethylation and enhancer-blocking activity at the H19 DMD is uncovered by CpG mutations. Nat. Genet., 36, 883-888.
22. Fedoriw, A.M., Stein, P., Svoboda, P., Schultz, R.M. and Bartolomei, M.S. (2004) Transgenic RNAi reveals essential function for CTCF in H19 gene imprinting. Science, 303, 238-240.
23. Engel, N., Thorvaldsen, J.L. and Bartolomei, M.S. (2006) CTCF binding sites promote transcription initiation and prevent DNA methylation on the maternal allele at the imprinted H19/Igf2 locus. Hum. Mol. Genet., 15, 2945-2954.
24. Kim, J.D., Hinz, A.K., Choo, J.H., Stubbs, L. and Kim, J. (2007) YY1 as a controlling factor for the Peg3 and Gnas imprinted domains. Genomics, 89, 262-269.
25. Kim, J. and Kim, J.D. (2008) In vivo YY1-knockdown effects on genomic imprinting. Hum. Mol. Genet., 17, 391-401.
26. Donohoe, M.E., Zhang, L.F., Xu, N., Shi, Y. and Lee, J.T. (2007) Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch. Mol. Cell, 25, 43-56.
27. Ventura, A., Meissner, A., Dillon, C.P., McManus, M., Sharp, P.A., Van Parijs, L., Jaenisch, R. and Jacks, T. (2004) Cre-lox-regulated conditional RNA interference from transgenes. Proc. Natl Acad. Sci. USA, 101, 10380-10385.
28. Bunch, P.O. and Saling, P.M. (1991) Generation of a mouse membrane fraction with zona receptor activity. Biol. Reprod., 44, 672-680.
29. Eppig, J.J. and Telfer, E. (1993) Isolation and culture of oocytes. Methods Enzymol., 225, 77-84.
30. Hogan, B., Beddington, R., Constantini, F. and Lacy, E. (eds). (1994) In Manipulating the Mouse Embryo, 2nd ed. Cold Spring Harbor Laboratory Press, New York, pp. 296-298.
31. Xiong, Z. and Laird, P.W. (1997) COBRA: a sensitive and quantitative DNA methylation assay. Nucleic Acids Res., 25, 2532-2534.
32. Howell, C., Bestor, T., Ding, F., Latham, K., Mertineit, C., Trasler, J. and Chaillet, J. (2001) Genomic imprinting disrupted by a maternal effect mutation in the Dnmt1 gene. Cell, 104, 829-838.
33. Rezai-Zadeh, N., Zhang, X., Namour, F., Fejer, G., Wen, Y.D., Yao, Y.L., Gyory, I., Wright, K. and Seto, E. (2003) Targeted recruitment of a histone H4-specific methyltransferase by the transcription factor YY1. Genes Dev., 17, 1019-1029.
34. Klymenko, T., Papp, B., Fischle, W., Köcher, T., Schelder, M., Fritsch, C., Wild, B., Wilm, M. and Müller, J. (2006) A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities. Genes Dev., 20, 1110-1122.
35. Kim, J.D. and Kim, J. (2009) YY1's longer DNA binding motifs. Genomics, 93, 152-158.
36. Scott, R.H., Douglas, J., Baskcomb, L., Huxter, N., Barker, K., Hanks, S., Craft, A., Gerrard, M., Kohler, J.A., Levitt, G.A. et al. (2008) Constitutional 11p15 abnormalities, including heritable imprinting center mutations, cause nonsyndromic Wilms tumor. Nat. Genet., 40, 1329-1334.
37. Kim, J. (2008) Multiple YY1 and CTCF binding sites in imprinting control regions. Epigenetics, 3, 115-118.
38. Kaneda, M., Okano, M., Hata, K., Sado, T., Tsujimoto, N., Li, E. and Sasaki, H. (2004) Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting. Nature, 429, 900 903.