Control of equine influenza: Scenario testing using a realistic metapopulation model of spread

Journal of the Royal Society Interface

Volumn 7, Issue 42, 2009, Pages 67-79

  Baguelin, M ^a,b   Newton, J R ^a   Demiris, N ^c   Daly, J ^d   Mumford, J A ^b   Wood, J L N ^b  

^a ANIMAL HEALTH TRUST   (United Kingdom)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d UNIVERSITY OF LIVERPOOL   (United Kingdom)

Author keywords

Equine influenza; Influenza control; Metapopulation; Simulated likelihood; Stochastic modelling

Indexed keywords

FLUORINE CONTAINING POLYMERS; RISK PERCEPTION; STOCHASTIC SYSTEMS;

GROUP LEVEL; INFECTIOUS PERIOD; METAPOPULATION MODEL; METAPOPULATIONS; SCENARIO TESTING; SIMULATED LIKELIHOOD; STATISTICAL MODELS; STOCHASTIC MODELLING;

STOCHASTIC CONTROL SYSTEMS;

INFLUENZA VACCINE;

ARTICLE; CONTROLLED STUDY; DISEASE TRANSMISSION; EPIDEMIC; EQUINE INFLUENZA; HORSE; INFLUENZA; INFLUENZA VACCINATION; METAPOPULATION; NONHUMAN; UNITED KINGDOM;

EQUIDAE;

EID: 72849135369     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2009.0030     Document Type: Article

References (30)

1. Allman, E. S. & Rhodes, J. A. 2004 Mathematical models in biology: an introduction. Cambridge, UK: Cambridge University Press.
2. Andersson, H. & Britton, T. 2000 Stochastic epidemic models and their statistical analysis. Lecture Notes in Statistics, vol.151. New York, NY: Springer.
3. Ball, F., Mollison, D. & Scalia-Tomba, G. 1997 Epidemics with two levels of mixing. Ann. Appl. Probab. 7, 46-89. (doi:10.1214/aoap/1034625252)
4. Barquero, N., Daly, J. M. & Newton, J. R. 2007 Risk factors for influenza infection in vaccinated racehorses: lessons from an outbreak in Newmarket, UK in 2003. Vaccine 25, 7520-7529. (doi:10.1016/j.vaccine.2007.08. 038) (Pubitemid 47516616)
5. Beaumont, M., Zhang, W. & Balding, D. 2002 Approximate Bayesian computation in population genetics. Genetics 162, 2025-2035. (Pubitemid 36114682)
6. Bell, L. 2003 Horses in training 2003. London, UK: Raceform Ltd.
7. Burrell, M. H., Wood, J. N., Whitwell, K. E., Chanter, N., Mackintosh, M. E. & Mumford, J. A. 1996 Respiratory disease in thoroughbred horses in training: the relationships between disease and viruses, bacteria and environment. Vet. Rec. 139, 308-313.
8. Daly, J. M., Lai, A. C., Binns, M. M., Chambers, T. M., Barrandeguy, M. & Mumford, J. A. 1996 Antigenic and genetic evolution of equine H3N8 influenza viruses. J. Gen. Virol. 77, 661-671. (doi:10.1099/0022-1317-77-4-661)
9. Daly, J. M., Yates, P. J., Newton, J. R., Park, A., Henley, W., Wood, J. L. N., Davis-Poynter, N. & Mumford, J. A. 2004 Evidence supporting the inclusion of strains from each of the two co-circulating lineages of H3N8 equine influenza virus in vaccines. Vaccine 22, 4101-4109. (doi:10.1016/j.vaccine. 2004.02.048) (Pubitemid 39208777)
10. de Jong, M. C. M., Diekmann, O. & Heersterbeek, H. 1995 How does transmission of infection depend on population size? In Epidemic models: their structure and relation to data, pp. 84-94. Cambridge, UK: Cambridge University Press.
11. Demiris, N. & O'Neill, P. D. 2005 Bayesian inference for stochastic multitype epidemics in structured populations via random graphs. J. R. Stat. Soc. B 67, 731-745. (doi:10.1111/j.1467-9868.2005.00524.x)
12. Demiris, N. & O'Neill, P. D. 2006 Computation of final outcome probabilities for the generalised stochastic epidemic. Stat. Comput. 16, 309-317. (doi:10.1007/s11222-006-8320-4)
13. Glass, K., Wood, J. L. N., Mumford, J. A., Jesset, D. & Grenfell, B. T. 2002 Modelling equine influenza 1: a stochastic model of within-yard epidemics. Epidemiol. Infect. 128, 491-502. (doi:10.1017/S0950268802006829)
14. Keeling, M. J. & Grenfell, B. T. 1998 Effect of variability in infection period on the persistence and spatial spread of infectious diseases. Math. Biosci. 147, 207-226. (doi:10.1016/S0025-5564(97)00101-6)
15. Marjoram, P., Molitor, J., Plagnol, V. & Tavare, S. 2003 Markov chain Monte Carlo without likelihoods. Proc. Natl Acad. Sci. USA 100, 15 324-15 328. (doi:10.1073/pnas.0306899100)
16. Mumford, J. A. 1999 The equine influenza surveillance program. Adv. Vet. Med. 41, 379-387. (doi:10.1016/S0065-3519(99)80028-7)
17. Mumford, J. A., Wood, J. M., Scott, A. M., Folkers, C. & Schild, G. C. 1983 Studies with inactivated equine influenza vaccine. 2. Protection against experimental infection with influenza A/equine/Newmarket/79(H3N8). J. Hyg. 90, 385-395.
18. Newton, J. R., Townsend, H. G. G., Wood, J. L. N., Sinclair, R., Hannant, D. & Mumford, J. A. 2000a Immunity to equine influenza: relationship of vaccine-induced antibody in young thoroughbred racehorses to protection against field infection with influenza A/equine-2 viruses (H3N8). Equine Vet. J. 32, 65-74. (doi:10.2746/042516400777612116)
19. Newton, J. R., Lakhani, K. H., Wood, J. L. N. & Baker, D. J. 2000b Risk factors for equine influenza serum antibody titres in young thoroughbred racehorses given an inactivated vaccine. Prev. Vet. Med. 46, 129-141. (doi:10.1016/S0167-5877(00)00144-6)
20. Newton, J. R., Daly, J., Spencer, L. & Mumford, J. A. 2006 Description of the outbreak of equine influenza (H3N8) in the United Kingdom in 2003, during which recently vaccinated horses in Newmarket developed respiratory disease. Vet. Rec. 158, 185-192.
21. Park, A. W., Wood, J. L. N., Newton, J. R., Daly, J., Mumford, J. A. & Grenfell, B. T. 2003 Optimising vaccination strategies in equine influenza. Vaccine 21, 2862-2870. (doi:10.1016/S0264-410X(03)00156-7) (Pubitemid 36703197)
22. Park, A. W., Wood, J. L. N., Daly, J., Newton, J. R., Glass, K., Henley, W., Mumford, J. A. & Grenfell, B. T. 2004 The effects of strain heterology on the epidemiology of equine influenza in a vaccinated population. Proc. R. Soc. Lond. B 271, 1547-1555. (doi:10.1098/rspb.2004.2766)
23. Potter, C. W. (ed) 2002 Influenza. Perspectives in Medical Virology 7, pp. 49-85. Amsterdam, The Netherlands: Elsevier.
24. Powell, D. G. (ed.) 1988 Equine infectious diseases V. In Proc. 5th Int. Conf. Lexington, KY: University Press of Kentucky.
25. Renshaw, E. 1991 Modelling biological populations in space and time. Cambridge, UK: Cambridge University Press.
26. Savill, N. J., St Rose, S. G., Keeling, M. J. & Woolhouse, M. E. J. 2006 Silent spread of H5N1 in vaccinated poultry. Nature 442, 757. (doi:10.1038/442757a)
27. Smith, D. J., Lapedes, A. S., de Jong, J. C., Bestebroer, T. M., Rimmelzwaan, G. F., Ostertaus, A. D. & Fouchier, R. A. 2004 Mapping the antigenic and genetic evolution of influenza virus. Science 305, 371-376. (doi:10.1126/science.1097211)
28. Turkington, C. & Ashby, B. 1998 Encyclopaedia of infectious diseases. New York, NY: Facts on File.
29. van der Goot, J. A., Koch, G., de Jong, M. C. M. & van Boven, M. 2005 Quantification of the effect of vaccination on transmission of avian influenza (H7N7) in chickens. Proc. Natl Acad. Sci. USA 102, 18 141-18 146. (doi:10.1073/pnas.0505098102)
30. Wood, J. L., Newton, J. R., Chanter, N. & Mumford, J. A. 2005 Inflammatory airway disease, nasal discharge and respiratory infections in young British racehorses. Equine Vet. J. 37, 236-242. (doi:10.2746/0425164054530579) (Pubitemid 40655932)