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Volumn 28, Issue 29, 2009, Pages 3581-3596

Detecting SNP-expression associations: A comparison of mutual information and median test with standard statistical approaches

Author keywords

Gene expression; Genetic association; Median test; Mutual information

Indexed keywords

ADENOSINE A1 RECEPTOR; ADRENOMEDULLIN; CYCLIN DEPENDENT KINASE INHIBITOR 2A; CYCLIN DEPENDENT KINASE INHIBITOR 2B; FC RECEPTOR; FC RECEPTOR IIIB; UNCLASSIFIED DRUG;

EID: 72849123511     PISSN: 02776715     EISSN: 10970258     Source Type: Journal    
DOI: 10.1002/sim.3695     Document Type: Article
Times cited : (15)

References (45)
  • 1
    • 42649115776 scopus 로고    scopus 로고
    • The success of the genome-wide association approach: A brief story of a long struggle
    • DOI: 10.1038/ejhg.2008.12
    • Seng KC, Seng CK. The success of the genome-wide association approach: a brief story of a long struggle. European Journal of Human Genetics 2008; 16:554-564. DOI: 10.1038/ejhg.2008.12.
    • (2008) European Journal of Human Genetics , vol.16 , pp. 554-564
    • Seng, K.C.1    Seng, C.K.2
  • 8
    • 38549092257 scopus 로고    scopus 로고
    • Four SNPs on chromosome 9p21 in a south Korean population implicate a genetic locus that confers high cross-race risk for development of coronary artery disease
    • DOI: 10.1161/ATVBAHA.107.157248
    • Shen GQ, Li L, Rao S, Abdullah KG, Ban JM, Lee BS, Park JE, Wang QK. Four SNPs on chromosome 9p21 in a south Korean population implicate a genetic locus that confers high cross-race risk for development of coronary artery disease. Arteriosclerosis, Thrombosis, and Vascular Biology 2008; 28:360-365. DOI: 10.1161/ATVBAHA.107.157248.
    • (2008) Arteriosclerosis, Thrombosis, and Vascular Biology , vol.28 , pp. 360-365
    • Shen, G.Q.1    Li, L.2    Rao, S.3    Abdullah, K.G.4    Ban, J.M.5    Lee, B.S.6    Park, J.E.7    Wang, Q.K.8
  • 9
    • 33745199150 scopus 로고    scopus 로고
    • Integrating genetic and gene expression data: Application to cardiovascular and metabolic traits in mice
    • DOI: 10.1007/s00335-005-0175-z
    • Drake TA, Schadt EE, Lusis AJ. Integrating genetic and gene expression data: application to cardiovascular and metabolic traits in mice. Mammalian Genome 2006; 17:466-479. DOI: 10.1007/s00335-005-0175-z.
    • (2006) Mammalian Genome , vol.17 , pp. 466-479
    • Drake, T.A.1    Schadt, E.E.2    Lusis, A.J.3
  • 10
    • 27644482314 scopus 로고    scopus 로고
    • Mapping determinants of human gene expression by regional and genome-wide association
    • DOI: 10.1038/nature04244
    • Cheung VG, Spielman RS, Ewens KG, Weber TM, Morley M, Burdick JT. Mapping determinants of human gene expression by regional and genome-wide association. Nature 2005; 437:1365-1369. DOI: 10.1038/nature04244.
    • (2005) Nature , vol.437 , pp. 1365-1369
    • Cheung, V.G.1    Spielman, R.S.2    Ewens, K.G.3    Weber, T.M.4    Morley, M.5    Burdick, J.T.6
  • 13
    • 72849134978 scopus 로고
    • DOI: 10.3102/10769986011004263
    • Statistics 1986; 11:263-274. DOI: 10.3102/10769986011004263.
    • (1986) Statistics , vol.11 , pp. 263-274
  • 15
    • 0034368344 scopus 로고    scopus 로고
    • Should the median test be retired from general use?
    • Freidlin B, Gastwirth JL. Should the median test be retired from general use? The American Statistician 2000; 54:161-164.
    • (2000) The American Statistician , vol.54 , pp. 161-164
    • Freidlin, B.1    Gastwirth, J.L.2
  • 18
    • 25444528240 scopus 로고    scopus 로고
    • An entropy-based gene selection method for cancer classification using microarray data
    • DOI 10.1186/1471-2105-6-76
    • Liu X, Krishnan A, Mondry A. An entropy-based gene selection method for cancer classification using microarray data. BMC Bioinformatics 2005; 6:76. DOI: 10.1186/1471-2105-6-76. (Pubitemid 41357939)
    • (2005) BMC Bioinformatics , vol.6 , pp. 76
    • Liu, X.1    Krishnan, A.2    Mondry, A.3
  • 19
    • 38049064889 scopus 로고    scopus 로고
    • Genetic association studies for gene expressions: Permutation-based mutual information in a comparison with standard ANOVA and as a novel approach for feature selection
    • Szymczak S, Nuzzo A, Fuchsberger C, Schwarz DF, Ziegler A, Bellazi R, Igl BW. Genetic association studies for gene expressions: permutation-based mutual information in a comparison with standard ANOVA and as a novel approach for feature selection. BMC Proceedings 2007; 1:S9.
    • (2007) BMC Proceedings , vol.1
    • Szymczak, S.1    Nuzzo, A.2    Fuchsberger, C.3    Schwarz, D.F.4    Ziegler, A.5    Bellazi, R.6    Igl, B.W.7
  • 26
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • DOI: 10.1145/584091.584093
    • Shannon CE. A mathematical theory of communication. Bell System Technical Journal 1948; 27:379-423. DOI: 10.1145/584091.584093.
    • (1948) Bell System Technical Journal , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 27
    • 24344496951 scopus 로고    scopus 로고
    • An approximation to the distribution of finite sample size mutual information estimates
    • GC13-3, ICC 2005 - 2005 IEEE International Conference on Communications
    • Goebel B, Dawy Z, Hagenauer J, Mueller JC. An approximation to the distribution of finite sample size mutual information estimates. Proceedings of the IEEE International Conference on Communications, Seoul, Korea, vol.2, 2005; 1102-1106. (Pubitemid 41259588)
    • (2005) IEEE International Conference on Communications , vol.2 , pp. 1102-1106
    • Goebel, B.1    Dawy, Z.2    Hagenauer, J.3    Mueller, J.C.4
  • 28
    • 0000124902 scopus 로고
    • On the comparison of several mean values: An alternative approach
    • DOI: 10.1093/biomet/38.3-4.330
    • Welch BL. On the comparison of several mean values: an alternative approach. Biometrika 1951; 38:330-336. DOI: 10.1093/biomet/38.3-4.330.
    • (1951) Biometrika , vol.38 , pp. 330-336
    • Welch, B.L.1
  • 29
    • 0000917778 scopus 로고
    • A nonparametric test for the several sample problem
    • DOI: 10.1214/aoms/1177729332
    • Kruskal WH. A nonparametric test for the several sample problem. Annals of Mathematical Statistics 1952; 23:525-540. DOI: 10.1214/aoms/1177729332.
    • (1952) Annals of Mathematical Statistics , vol.23 , pp. 525-540
    • Kruskal, W.H.1
  • 30
    • 0000013087 scopus 로고
    • Asymptotic behavior of some rank tests for analysis of variance
    • DOI: 10.1214/aoms/1177728658
    • Andrews FC. Asymptotic behavior of some rank tests for analysis of variance. Annals of Mathematical Statistics 1954; 25:724-736. DOI: 10.1214/aoms/1177728658.
    • (1954) Annals of Mathematical Statistics , vol.25 , pp. 724-736
    • Andrews, F.C.1
  • 32
    • 34248547495 scopus 로고    scopus 로고
    • Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: Identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF
    • DOI 10.1158/0008-5472.CAN-06-2004
    • Pasmant E, Laurendeau I, Héron D, Vidaud M, Vidaud D, Bìeche I. Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF. Cancer Research 2007; 67:3963-3969. DOI: 10.1158/0008-5472.CAN-06-2004. (Pubitemid 46762186)
    • (2007) Cancer Research , vol.67 , Issue.8 , pp. 3963-3969
    • Pasmant, E.1    Laurendeau, I.2    Heron, D.3    Vidaud, M.4    Vidaud, D.5    Bieche, I.6
  • 35
    • 13344278672 scopus 로고    scopus 로고
    • Content-rich biological network constructed by mining PubMed abstracts
    • DOI 10.1186/1471-2105-5-147
    • Chen H, Sharp BM. Content-rich biological network constructed by mining pubmed abstracts. BMC Bioinformatics 2004; 5:147. DOI: 10.1186/1471-2105-5-147. (Pubitemid 40198134)
    • (2004) BMC Bioinformatics , vol.5 , pp. 147
    • Chen, H.1    Sharp, B.M.2
  • 37
    • 20444506427 scopus 로고    scopus 로고
    • Haplotype-based case-control study revealing an association between the adrenomedullin gene and proteinuria in subjects with essential hypertension
    • DOI 10.1291/hypres.28.229
    • Kobayashi Y, Nakayama T, Sato N, Izumi Y, Kokubun S, Soma M. Haplotype-based case-control study revealing an association between the adrenomedullin gene and proteinuria in subjects with essential hypertension. Hypertension Research 2005; 28:229-236. (Pubitemid 40812607)
    • (2005) Hypertension Research , vol.28 , Issue.3 , pp. 229-236
    • Kobayashi, Y.1    Nakayama, T.2    Sato, N.3    Izumi, Y.4    Kokubun, S.5    Soma, M.6
  • 38
    • 33645500451 scopus 로고    scopus 로고
    • Blood pressure and urinary sodium excretion in relation to the A-1984G adrenomedullin polymorphism in a Chinese population
    • DOI: 10.1038/sj.ki.5000213
    • Li Y, Staessen JA, Li LH, Gao PJ, Thijs L, Brand E, Brand-Herrmann SM, Zhu DL, Wang JG. Blood pressure and urinary sodium excretion in relation to the A-1984G adrenomedullin polymorphism in a Chinese population. Kidney International 2006; 69:1153-1158. DOI: 10.1038/sj.ki.5000213.
    • (2006) Kidney International , vol.69 , pp. 1153-1158
    • Li, Y.1    Staessen, J.A.2    Li, L.H.3    Gao, P.J.4    Thijs, L.5    Brand, E.6    Brand-Herrmann, S.M.7    Zhu, D.L.8    Wang, J.G.9
  • 39
    • 0035570713 scopus 로고    scopus 로고
    • Microsatellite DNA polymorphism of human adrenomedullin gene in normotensive subjects and patients with essential hypertension
    • Ishimitsu T, Hosoya K, Tsukada K, Minami J, Futoh Y, Ono H, Ohrui M, Hino J, Kangawa K, Matsuoka H. Microsatellite DNA polymorphism of human adrenomedullin gene in normotensive subjects and patients with essential hypertension. Hypertension 2001; 38:9-12. (Pubitemid 34224763)
    • (2001) Hypertension , vol.38 , Issue.1 , pp. 9-12
    • Ishimitsu, T.1    Hosoya, K.2    Tsukada, K.3    Minami, J.4    Futoh, Y.5    Ono, H.6    Ohrui, M.7    Hino, J.8    Kangawa, K.9    Matsuoka, H.10
  • 40
    • 15244358941 scopus 로고    scopus 로고
    • Fc receptors and their role in immune regulation and autoimmunity
    • DOI 10.1007/s10875-005-0353-8
    • Takai T. Fc receptors and their role in immune regulation and autoimmunity. Journal of Clinical Immunology 2005; 25:1-18. DOI: 10.1007/s10875-005-0353-8. (Pubitemid 40386174)
    • (2005) Journal of Clinical Immunology , vol.25 , Issue.1 , pp. 1-18
    • Takai, T.1
  • 41
    • 23044461828 scopus 로고    scopus 로고
    • Fcgamma receptor IIIA polymorphism as a risk-factor for coronary artery disease
    • DOI 10.1016/j.atherosclerosis.2004.12.011, PII S0021915004006562
    • Gavasso S, Nygård O, Pedersen ER, Aarseth JH, Bleie O, Myhr KM, Vedeler CA. Fcgamma receptor IIIA polymorphism as a risk-factor for coronary artery disease. Atherosclerosis 2005; 180:277-282. DOI: 10.1016/j. atherosclerosis.2004.12.011. (Pubitemid 41072897)
    • (2005) Atherosclerosis , vol.180 , Issue.2 , pp. 277-282
    • Gavasso, S.1    Nygard, O.2    Pedersen, E.R.3    Aarseth, J.H.4    Bleie, O.5    Myhr, K.-M.6    Vedeler, C.A.7
  • 42
    • 0036154197 scopus 로고    scopus 로고
    • Patterns of low-affinity immunoglobulin receptor polymorphisms in stroke and homozygous sickle cell disease
    • DOI 10.1002/ajh.10048
    • Taylor JG, Tang D, Foster CB, Serjeant GR, Rodgers GP, Chanock SJ. Patterns of low-affinity immunoglobulin receptor polymorphism in stroke and homozygous sickle cell disease. American Journal of Hematology 2002; 69:109-114. (Pubitemid 34111162)
    • (2002) American Journal of Hematology , vol.69 , Issue.2 , pp. 109-114
    • Taylor VI, J.G.1    Tang, D.2    Foster, C.B.3    Serjeant, G.R.4    Rodgers, G.P.5    Chanock, S.J.6
  • 44


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.