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Volumn 24, Issue 4, 2009, Pages 315-321

Phylotype-specific productivity of marine bacterial populations in eutrophic seawater, as revealed by bromodeoxyuridine immunocytochemistry combined with fluorescence in situ hybridization

Author keywords

Bromodeoxyuridine; Fluorescence in situ hybridization; Marine bacteria

Indexed keywords

ALGAE; BACTERIA (MICROORGANISMS); BACTEROIDETES; VIBRIO;

EID: 72549110110     PISSN: 13426311     EISSN: 13426311     Source Type: Journal    
DOI: 10.1264/jsme2.ME09162     Document Type: Article
Times cited : (9)

References (40)
  • 1
    • 33846467724 scopus 로고    scopus 로고
    • Abundance and activity of major groups of prokaryotic plankton in the coastal North Sea during spring and summer
    • Alderkamp, A.-C., E. Sintes, and G.J. Herndl. 2006. Abundance and activity of major groups of prokaryotic plankton in the coastal North Sea during spring and summer. Aquat. Microb. Ecol. 45:237-246.
    • (2006) Aquat. Microb. Ecol , vol.45 , pp. 237-246
    • Alderkamp, A.-C.1    Sintes, E.2    Herndl, G.J.3
  • 2
    • 34548414947 scopus 로고    scopus 로고
    • Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms
    • Allers, E., L. Gómez-Consarnau, J. Pinhassi, J.M. Gasol, K. Šimek, and J. Pernthaler. 2007. Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environ. Microbiol. 9:2417-2429.
    • (2007) Environ. Microbiol , vol.9 , pp. 2417-2429
    • Allers, E.1    Gómez-Consarnau, L.2    Pinhassi, J.3    Gasol, J.M.4    Šimek, K.5    Pernthaler, J.6
  • 3
    • 33749389950 scopus 로고    scopus 로고
    • Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters
    • Alonso, C., and J. Pernthaler. 2006. Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters. Environ. Microbiol. 8:2022-2030.
    • (2006) Environ. Microbiol , vol.8 , pp. 2022-2030
    • Alonso, C.1    Pernthaler, J.2
  • 4
    • 42349093774 scopus 로고    scopus 로고
    • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    • Amann, R., and B.M. Fuchs. 2008. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nature Rev. Microbiol. 6: 339-348.
    • (2008) Nature Rev. Microbiol , vol.6 , pp. 339-348
    • Amann, R.1    Fuchs, B.M.2
  • 5
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow-cytometry for analyzing mixed microbial populations
    • Amann, R.I., B.J. Binder, R.J. Olson, S.W. Chisholm, R. Devereux, and D.A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow-cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 7
    • 0002381096 scopus 로고
    • Bacterial production in fresh and saltwater ecosystems: A cross-system overview
    • Cole, J.J., S. Findlay, and M.L. Pace. 1988. Bacterial production in fresh and saltwater ecosystems: a cross-system overview. Mar. Ecol. Prog. Ser. 43:1-10.
    • (1988) Mar. Ecol. Prog. Ser , vol.43 , pp. 1-10
    • Cole, J.J.1    Findlay, S.2    Pace, M.L.3
  • 8
    • 0034068899 scopus 로고    scopus 로고
    • Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming lowand high-molecular weight dissolved organic matter
    • Cottrell, M.T., and D.L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming lowand high-molecular weight dissolved organic matter. Appl. Environ. Microbiol. 66:1692-1697.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 1692-1697
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 9
    • 0033916615 scopus 로고    scopus 로고
    • Culturability and in situ abundance of pelagic bacteria from the North Sea
    • Eilers, H., J. Pernthaler, F.O. Glöckner, and R. Amann. 2000. Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl. Environ. Microbiol. 66:3044-3051.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3044-3051
    • Eilers, H.1    Pernthaler, J.2    Glöckner, F.O.3    Amann, R.4
  • 10
    • 34250228655 scopus 로고
    • Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: Evaluation and field results
    • Fuhrman, J.A., and F. Azam. 1982. Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: evaluation and field results. Mar. Biol. 66:109-120.
    • (1982) Mar. Biol , vol.66 , pp. 109-120
    • Fuhrman, J.A.1    Azam, F.2
  • 11
    • 0000262823 scopus 로고    scopus 로고
    • Evolution, diversity and molecular ecology of marine prokaryotes
    • In D.L. Kirchman (ed.), Willy-Liss, New York, USA
    • Giovannoni, S.J., and M. Rappé. 2000. Evolution, diversity and molecular ecology of marine prokaryotes, p. 47-84. In D.L. Kirchman (ed.), Microbial Ecology of the Oceans. Willy-Liss, New York, USA.
    • (2000) Microbial Ecology of The Oceans , pp. 47-84
    • Giovannoni, S.J.1    Rappé, M.2
  • 12
    • 0032905976 scopus 로고    scopus 로고
    • Identification of culturable oligotrophic bacteria within naturally occurring bacterioplankton communities of the Ligurian Sea by 16S rRNA sequencing and probing
    • Giuliano, L., M. De Domenico, E. De Domenico, M.G. Höfle, and M.M. Yakimov. 1999. Identification of culturable oligotrophic bacteria within naturally occurring bacterioplankton communities of the Ligurian Sea by 16S rRNA sequencing and probing. Microb. Ecol. 37:77-85.
    • (1999) Microb. Ecol , vol.37 , pp. 77-85
    • Giuliano, L.1    de Domenico, M.2    de Domenico, E.3    Höfle, M.G.4    Yakimov, M.M.5
  • 14
    • 4143089332 scopus 로고    scopus 로고
    • Individual cell growth rates of marine bacteria, measured by bromodeoxyuridine incorporation
    • Hamasaki, K., R.A. Long, and F. Azam. 2004. Individual cell growth rates of marine bacteria, measured by bromodeoxyuridine incorporation. Aquat. Microb. Ecol. 35:217-227.
    • (2004) Aquat. Microb. Ecol , vol.35 , pp. 217-227
    • Hamasaki, K.1    Long, R.A.2    Azam, F.3
  • 15
    • 34248230110 scopus 로고    scopus 로고
    • Actively growing bacteria in the Inland Sea of Japan, identified by combined bromodeoxyuridine immunocapture and denaturing gradient gel electrophoresis
    • Hamasaki, K., A. Taniguchi, Y. Tada, R.A. Long, and F. Azam. 2007. Actively growing bacteria in the Inland Sea of Japan, identified by combined bromodeoxyuridine immunocapture and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 73:2787-2798.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 2787-2798
    • Hamasaki, K.1    Taniguchi, A.2    Tada, Y.3    Long, R.A.4    Azam, F.5
  • 17
    • 0034622810 scopus 로고    scopus 로고
    • Composition of the bacterial community degrading Phaeocystis mucopolysaccharides in enrichment cultures
    • Janse, I., G. Zwart, M.J.E.C. van der Maarel, and J.C. Gottschal. 2000. Composition of the bacterial community degrading Phaeocystis mucopolysaccharides in enrichment cultures. Aquat. Microb. Ecol. 22:119-133.
    • (2000) Aquat. Microb. Ecol , vol.22 , pp. 119-133
    • Janse, I.1    Zwart, G.2    van der Maarel, M.J.E.C.3    Gottschal, J.C.4
  • 18
    • 0036207009 scopus 로고    scopus 로고
    • The ecology of Cytophaga-Flavobacteria in aquatic environments
    • Kirchman, D.L. 2002. The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol. Ecol. 39:91-100.
    • (2002) Fems Microbiol. Ecol , vol.39 , pp. 91-100
    • Kirchman, D.L.1
  • 19
    • 0021910579 scopus 로고
    • Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems
    • Kirchman, D.L., E. K'nees, and R.E. Hodson. 1985. Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Appl. Environ. Microbiol. 49:599-607.
    • (1985) Appl. Environ. Microbiol , vol.49 , pp. 599-607
    • Kirchman, D.L.1    K'nees, E.2    Hodson, R.E.3
  • 20
    • 0032986790 scopus 로고    scopus 로고
    • Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology
    • Lee, N., P.H. Nielsen, K.H. Andreasen, S. Juretschko, J.L. Nielsen, K.H. Schleifer, and M. Wagner. 1999. Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65:1289-1297.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 1289-1297
    • Lee, N.1    Nielsen, P.H.2    Andreasen, K.H.3    Juretschko, S.4    Nielsen, J.L.5    Schleifer, K.H.6    Wagner, M.7
  • 21
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
    • Manz, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15:593-600.
    • (1992) Syst. Appl. Microbiol , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 22
    • 9344247522 scopus 로고    scopus 로고
    • Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
    • Manz, W., R. Amann, W. Ludwig, M. Vancanneyt, and K.-H. Schleifer. 1996. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Micro-biology 142:1097-1106.
    • (1996) Micro-biology , vol.142 , pp. 1097-1106
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Vancanneyt, M.4    Schleifer, K.-H.5
  • 23
    • 0034098907 scopus 로고    scopus 로고
    • Simultaneous direct counting of total and specific microbial cells in seawater, using a deep-sea microbe as target
    • Maruyama, A., and M. Sunamura. 2000. Simultaneous direct counting of total and specific microbial cells in seawater, using a deep-sea microbe as target. Appl. Environ. Microbiol. 66:2211-2215.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 2211-2215
    • Maruyama, A.1    Sunamura, M.2
  • 24
    • 19944408938 scopus 로고    scopus 로고
    • Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
    • Moran, M.A., A. Buchan, J.M. González, et al. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432:910-913.
    • (2004) Nature , vol.432 , pp. 910-913
    • Moran, M.A.1    Buchan, A.2    González, J.M.3
  • 26
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, T.D., T.B. Britschgi, R.L. Krest, and S.J. Giovannoni. 1995. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40:148-158.
    • (1995) Limnol. Oceanogr , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 27
    • 0032958213 scopus 로고    scopus 로고
    • Combined microauto-radiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ
    • Ouverney, C.C., and J.A. Fuhrman. 1999. Combined microauto-radiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ. Appl. Environ. Microbiol. 65:1746-1752.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 1746-1752
    • Ouverney, C.C.1    Fuhrman, J.A.2
  • 28
    • 0036840901 scopus 로고    scopus 로고
    • Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton
    • Pernthaler, A., J. Penthaler, M. Schattenhofer, and R. Amann. 2002. Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton. Appl. Environ. Microbiol. 68:5728-5736.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 5728-5736
    • Pernthaler, A.1    Penthaler, J.2    Schattenhofer, M.3    Amann, R.4
  • 29
    • 23744477855 scopus 로고    scopus 로고
    • Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters
    • Pernthaler, A., and J. Pernthaler. 2005. Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters. Appl. Environ. Microbiol. 71:4638-4644.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 4638-4644
    • Pernthaler, A.1    Pernthaler, J.2
  • 31
    • 0000561885 scopus 로고
    • The order Cytophagales
    • In A. Barlows, H.G. Truber, M. Dworkin, W. Harder, and K.-H. Scheifer (ed.), Springer Verlag, New York, USA
    • Reichenbach, H., and M. Dworkin. 1992. The order Cytophagales, p. 3631-3687. In A. Barlows, H.G. Truber, M. Dworkin, W. Harder, and K.-H. Scheifer (ed.), The Prokaryotes. Springer Verlag, New York, USA.
    • (1992) The Prokaryotes , pp. 3631-3687
    • Reichenbach, H.1    Dworkin, M.2
  • 32
    • 0001003553 scopus 로고
    • Protein content and protein synthesis rates of planktonic marine bacteria
    • Simon, M., and F. Azam. 1989. Protein content and protein synthesis rates of planktonic marine bacteria. Mar. Ecol. Prog. Ser. 51:201-213.
    • (1989) Mar. Ecol. Prog. Ser , vol.51 , pp. 201-213
    • Simon, M.1    Azam, F.2
  • 33
    • 0037435039 scopus 로고    scopus 로고
    • Low fractions of active bacteria in natural aquatic communities?
    • Smith, E.M., and P.A. del Giorgio. 2003. Low fractions of active bacteria in natural aquatic communities? Aquat. Microb. Ecol. 31:203-208.
    • (2003) Aquat. Microb. Ecol , vol.31 , pp. 203-208
    • Smith, E.M.1    del Giorgio, P.A.2
  • 34
    • 0033530096 scopus 로고    scopus 로고
    • 3H-thymidine for measuring bacterial productivity in aquatic samples
    • 3H-thymidine for measuring bacterial productivity in aquatic samples. Aquat. Microb. Ecol. 19:57-66.
    • (1999) Aquat. Microb. Ecol , vol.19 , pp. 57-66
    • Steward, G.F.1    Azam, F.2
  • 35
    • 0025529461 scopus 로고
    • An improved method for the determination of phytoplankton chlorophyll using N, N-dimethylformamide
    • Suzuki, R., and T. Ishimaru. 1990. An improved method for the determination of phytoplankton chlorophyll using N, N-dimethylformamide. J. Oceanogr. 46:190-194.
    • (1990) J. Oceanogr , vol.46 , pp. 190-194
    • Suzuki, R.1    Ishimaru, T.2
  • 36
    • 40949087773 scopus 로고    scopus 로고
    • Community structures of actively growing bacteria shift along a north-south transect in the western North Pacific
    • Taniguchi, A., and K. Hamasaki. 2008. Community structures of actively growing bacteria shift along a north-south transect in the western North Pacific. Environ. Microbiol. 10:1007-1017.
    • (2008) Environ. Microbiol , vol.10 , pp. 1007-1017
    • Taniguchi, A.1    Hamasaki, K.2
  • 37
    • 0033030154 scopus 로고    scopus 로고
    • Immunochemical detection and isolation of DNA from metabolically active bacteria
    • Urbach, E., K.L. Vergin, and S.J. Giovanoni. 1999. Immunochemical detection and isolation of DNA from metabolically active bacteria. Appl. Environ. Microbiol. 65:1207-1213.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 1207-1213
    • Urbach, E.1    Vergin, K.L.2    Giovanoni, S.J.3
  • 38
    • 11144354360 scopus 로고    scopus 로고
    • Environmental genome shotgun sequencing of the Sargasso Sea
    • Venter, J.C., K. Remington, J.F. Heidelberg, et al. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
    • (2004) Science , vol.304 , pp. 66-74
    • Venter, J.C.1    Remington, K.2    Heidelberg, J.F.3
  • 39
    • 0027339723 scopus 로고
    • Optimizing fluorescent in situ hybridization of microorganisms
    • Wallner, G., R. Amann, and W. Beisker. 1993. Optimizing fluorescent in situ hybridization of microorganisms. Cytometry 14: 136-143.
    • (1993) Cytometry , vol.14 , pp. 136-143
    • Wallner, G.1    Amann, R.2    Beisker, W.3
  • 40
    • 0035214934 scopus 로고    scopus 로고
    • Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea
    • Zubkov, M.V., B.M. Fuch, S.D. Archer, R.P. Kiene, R. Amann, and P.H. Burkill. 2001. Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea. Environ. Microbiol. 3:304-311.
    • (2001) Environ. Microbiol , vol.3 , pp. 304-311
    • Zubkov, M.V.1    Fuch, B.M.2    Archer, S.D.3    Kiene, R.P.4    Amann, R.5    Burkill, P.H.6


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