Isolation of fungi from Lake Vostok accretion ice

Mycologia

Volumn 101, Issue 6, 2009, Pages 751-763

  D'Elia, Tom ^a   Veerapaneni, Ram ^a   Theraisnathan, Vincent ^a   Rogers, Scott O ^a  

^a BOWLING GREEN STATE UNIVERSITY   (United States)

Author keywords

Antarctica; Heterotrophs; ITS; Subglacial lake

Indexed keywords

FUNGAL DNA; RIBOSOMAL SPACER DNA; SEA WATER;

DETECTION METHOD; FUNGUS; GROWTH RATE; HETEROTROPHY; ICE; ICE CORE; ISOLATED POPULATION; LOW TEMPERATURE;

ANTARCTICA; ARTICLE; ASCOMYCETES; BASIDIOMYCETES; CYTOLOGY; DNA SEQUENCE; ECOSYSTEM; FLUORESCENCE MICROSCOPY; FUNGUS HYPHAE; FUNGUS SPORE; GENETICS; ICE COVER; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY;

ANTARCTIC REGIONS; ASCOMYCOTA; BASIDIOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; ECOSYSTEM; HYPHAE; ICE COVER; MICROSCOPY, FLUORESCENCE; PHYLOGENY; SEAWATER; SEQUENCE ANALYSIS, DNA; SPORES, FUNGAL; WATER MICROBIOLOGY;

ANTARCTICA; EAST ANTARCTICA; LAKE VOSTOK;

FUNGI;

EID: 72449166473     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/08-184     Document Type: Article

References (47)

1. Abyzov SS, Hoover RB, Imura S, Mitskevich IN, Naganuma T, Poglazova MN, Ivanov MN. 2004. Use of different methods for discovery of ice-entrapped microorganisms in ancient layers of the antarctic glacier. Adv Space Res 33:1222-1230.
2. Arenz BE, Held BW, Jurgens JA, Farrell RL, Blanchette RA. 2006. Fungal diversity in soils and historic wood from the Ross Sea region of Antarctica. Soil Biol Biochem 38: 3057-3064.
3. Bell R, Studinger M, Tikku A, Castello JD. 2005. Comparative biological analyses of accretion ice from subglacial Lake Vostok. In: Castello JD, Rogers SO, eds. Life in ancient ice. New Jersey: Princeton Univ Press. p 251-267.
4. Bell R, Studinger M, Tikku A, Castello JD. Clarke GKC, Gutner MM, Meertens C. 2002. Origin and fate of Lake Vostok Water frozen to the base of the east antarctic ice sheet. Nature 416:307- 310.
5. Bergero R, Girlanda M, Varese GC, Intili D, Luppi AM. 1999. Psychrooligotrophic fungi from arctic soils of Franz Joseph Land. Polar Biol 21:361-368.
6. Bulat SA, Alekhina IA, Blot M, Petit JR, de Angelis M, Waggenbach D, Lipenkov VY, Vasilyeva LP, Wloch DM, Raynaud D, Lukin VV. 2004. DNA signature of a thermophilic bacteria from the aged accretion ice of Lake Vostok, Antarctica: implications for searching for life in extreme icy environments. Int J Astrobiol 3:1-12.
7. Butinar L, Spencer-Martins I, Gunde-Cimerman N. 2007. Yeasts in high arctic glaciers: the discovery of a new habitat for eukaryotic microorganisms. Anton Leeuw 91:277-289.
8. Christner BC, Royston-Bishop G, Foreman CM, Arnold BR, Tranter M, Welch KA, Lyons WB, Tsapin AI, Studinger M, Priscu JC. 2006. Limnological conditions in subglacial Lake Vostok, Antarctica. Limnol Oceanogr 51: 2485-2501.
9. de Angeles M, Petit JR, Savarino J, Souches R, Thiemens MH. 2004. Contributions of an ancient evaporitic-type reservoir to subglacial Lake Vostok chemistry. Earth Planet Sc Lett 222:751-756.
10. D'Elia T, Veerapaneni R, Rogers SO. 2008. Isolation of microbes from Lake Vostok accretion ice. Appl Environ Microbiol 74:4962-4965.
11. Franzmann PD. 1996. Examination of antarctic prokaryotic diversity through molecular comparisons. Biodivers Conserv 5:1295-1305.
12. Jouzel J, Petit JR, Souchez R, Barkov NI, Lipenkov V, Raynaud D, Stievenard M, Vassiliev NI, Verbeke V, Vimeux F. 1999. More than 200 meters of lake ice above subglacial Lake Vostok, Antarctica. Science 286: 2138-2141.
13. Kapista A, Ridley JF, Robin GDeQ, Siegert MJ, Zotikov I. 1996. Large deep freshwater lake beneath the ice of central Antarctica. Nature 381:684-686.
14. Karl D, Bird DF, Bjorkman K, Houlihan T, Shakelford R, Tupas L. 1999. Microorganisms in the accreted ice of Lake Vostok. Science 286:2144-2147.
15. Ma LJ, Catranis C, Starmer WT, Rogers SO. 1999. Revival and characterization of fungi from ancient polar ice. Mycologist 13:70-73.
16. Ma LJ, Catranis CM, Starmer WT, Rogers SO. 2005. The significance and implications of the discovery of filamentous fungi in glacial ice. In: Castello JD, Rogers SO, eds. Life in ancient Ice. New Jersey: Princeton Univ Press. p 159-180.
17. Ma LJ, Rogers SO, Catranis C, Starmer WT. 2000. Detection and characterization of ancient fungi entrapped in glacial ice. Mycologia 92:286-295.
18. Marshall WA. 1997. Seasonality in antarctic airborne fungal spores. Appl Environ Microbiol 63:2240-2245.
19. McKay CP, Hand KP, Doran PT, Andersen DT, Priscu JC. 2003. Clathrate formation and the fate of noble and biologically useful gases in Lake Vostok, Antarctica. Geophys Res Lett 30:1702-1705.
20. Mitskevich IN, Poglazova MN, Abyzov SS, Barkov NI, Bobin NE, Ivanov MV. 2001. Microorganisms found in the basal horizons of the antarctic glacier above Lake Vostok. Doklady Biol Sci 381:582-585.
21. Ozerskaya SM, Ivanushkina NE, Kochkina GA, Fattakhova RN, Gilichinsky DA. 2004. Mycelial fungi in cryopegs. Int J Astrobiol 4:327-331.
22. Petit JR, Jouzel J, Raynaud D, Barkov NI, Barnola JM, Basile I, Bender M, Chappellaz J, Davisk M, Delaygue G, Delmotte M, Kotlyakov VM, Legrand M, Lipenkov VY, Lorius C, Pepin L, Ritz C, Saltzmank E, Stievenard M. 1999. Climate and atmospheric history of the past 420 000 y from the Vostok ice core, Antarctica. Nature 399:429-436.
23. Poglazova MN, Mitskevich IN, Abyzov SS, Ivanov MV. 2001. Microbiological characterization of the accreted ice of subglacial Lake Vostok, Antarctica. Microbiology 70: 723-730.
24. Priscu JC, Adams EE, Lyons WB, Voytek MA, Mogk DW, Brown RL, McKay CP, Takacs CD, Welch KA, Wolf CF, Kirshtein JD, Avci R. 1999. Geomicrobiology of subglacial ice above Lake Vostok, Antarctica. Science 286:2141-2144.
25. Robinson CH. 2001. Cold adaptation in arctic and antarctic fungi. New Phytol 151:341-353.
26. Rogers SO, Theraisnathan V, Ma LJ, Zhao Y, Zhang G, Shin SG, Castello JD, Starmer WT. 2004. Comparisons of protocols to decontaminate environmental ice samples for biological and molecular examinations. Appl Environ Microbiol 70:2540.
27. Rogers SO, Ma L, Zhao Y, Catranis CM, Starmer WT, Castello JD. 2005. Recommendations for elimination of contaminants and authentication of isolates in ancient ice cores. In: Castello JD, Rogers SO, eds. Life in ancient ice. New Jersey: Princeton Univ Press. p 5-21.
28. Royston-Bishop G, Priscu JC, Tranter M, Christner B, Siegert MJ, Lee V. 2005. Incorporation of particles into the accreted ice above subglacial Vostok lake, Antarctica. Ann Glaciol 40:145-150.
29. Salamatin AN, Petit JR, Lipenkov V. 2003. An estimate of Lake Vostok isolation time from a sensitivity experiment for the melting area. EGS-AGU-EUG Joint Assembly, abstract number 8277.
30. Salamatin AN, Tsyganova E, Lipenkov V, Petit JR. 2004. Vostok (Antarctica) ice-core time-scale from datings of different origins. Annals Glaciol 39:283-292.
31. Sharp M, Parkes J, Cragg B, Fairchild J, Tranter M. 1999. Widespread bacterial populations at glacier beds and their relationship to rock weathering and carbon cycling. Geology 27:107-110.
32. Siegert MJ, Carter S, Tabacco I, Popov S, Blankenship DD. 2005. A revised inventory of antarctic subglacial lakes. Antarct Sci 17:453-460.
33. Siegert MJ, Ellis-Evans JC, Tranter M, Mayer C, Petit JR, Salamatin A, Priscu JC. 2001. Physical, chemical and biological processes in Lake Vostok and other antarctic subglacial lakes. Nature 414:603-609.
34. Siegert MJ, Kwok R, Mayer C, Hubbard B. 2000. Water exchange between the subglacial Lake Vostok and the overlying ice sheet. Nature 403:643-646.
35. Siegert MJ, Tranter M, Ellis-Evans JC, Priscu JC, Lyons WB. 2003. The hydrochemistry of Lake Vostok and the potential for life in antarctic subglacial lakes. Hydrol Process 17:795-814.
36. Snider CS, Hsiang T, Zhao G, Griffith M. 2000. Role of ice nucleation and antifreeze activities in pathogenesis and growth of snow molds. Phytopathology 90:354- 361.
37. Sonjak S, Frisvad JC, Gunde-Cimerman N. 2006. Penicillium mycobiota in arctic subglacial ice. Micro Ecol 52:207- 216.
38. Sonjak S, Ursic V, Frisvad JC, Gunde-Cimerman N. 2007. Penicillium svalbardense, a new species from arctic glacial ice. Anton Leeuw 92:43-51.
39. Starmer WT, Fell JW, Catranis CM, Aberdeen V, Ma LJ, Zhou S, Rogers SO. 2005. Yeasts in the genus Rhodotorula recovered from the Greenland ice sheet. In: Castello JD, Rogers SO, eds. Life in ancient ice. New Jersey: Princeton Univ Press. p 181-195.
40. Studinger M, Bell RE, Tikku AA. 2004. Estimating the depth and shape of subglacial Lake Vostok's water cavity from aerogravity data. Geophys Res Lett 31: L12401.
41. Swofford D. 1999. PAUP: phylogenetic analysis using parsimony. Version 4.0b2a (PPC). Sunderland, Massachusetts: Sinauer and Associates.
42. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
43. Tosi S, Casado B, Gerdol R, Caretta G. 2002. Fungi isolated from antarctic mosses. Polar Biol 25:262-268.
44. Vincent WF. 2000. Evolutionary origins of antarctic microbiota: invasion, selection and endemism. Antarct Sci 12:374-385.
45. Weinstein RN, Montie PO, Johnstone K. 2000. Influence of growth temperature on lipid and soluble carbohydrate synthesis by fungi isolated from fellfield soil in the maritime antarctic. Mycologia 92:222-229.
46. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogentics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315-322.
47. Wingham DJ, Seigert MJ, Shepherd A, Muir AS. 2006. Rapid discharge connects antarctic subglacial lakes. Nature 440:1033-1036.