The subspace iteration method in protein normal mode analysis

Journal of Computational Chemistry

Volumn 31, Issue 1, 2010, Pages 66-74

  Sedeh, Reza Sharifi ^a   Bathe, Mark ^a   Bathe, Klaus Jürgen ^a  

^a USA   (United States)

Author keywords

Conformational change pathway; Frequency; Macromolecule; Mode shape

Indexed keywords

ADENYLATE KINASE; BIOLOGICAL FUNCTIONS; COMPUTATIONAL APPROACH; COMPUTATIONAL ROBUSTNESS; COMPUTATIONAL TIME; CONFORMATIONAL CHANGE; CONFORMATIONAL CHANGE PATHWAY; CONFORMATIONAL DYNAMICS; EFFECTIVE ALGORITHMS; LARGE SYSTEM; MODE SHAPES; MULTIPLE PROCESSORS; NORMAL MODE ANALYSIS; NORMAL MODES; NUMBER OF ITERATIONS; NUMERICAL PROCEDURES; NUMERICAL STABILITIES; PATHWAY ANALYSIS; PROTEIN SCIENCE; STRUCTURAL MECHANICS; SUBSPACE ITERATION METHOD;

CONVERGENCE OF NUMERICAL METHODS; ITERATIVE METHODS; MACROMOLECULES; PROTEINS;

COMPUTATIONAL EFFICIENCY;

PROTEIN;

ALGORITHM; ARTICLE; BIOLOGY; CHEMISTRY; MATHEMATICAL COMPUTING; METHODOLOGY; PROTEIN CONFORMATION;

ALGORITHMS; COMPUTATIONAL BIOLOGY; NUMERICAL ANALYSIS, COMPUTER-ASSISTED; PROTEIN CONFORMATION; PROTEINS;

EID: 72449120988     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.21250     Document Type: Article

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