Characteristics of microsatellite loci in Odonata

International Journal of Odonatology

Volumn 12, Issue 2, 2009, Pages 275-286

  Watts, Phillip C ^a  

^a UNIVERSITY OF LIVERPOOL   (United Kingdom)

Author keywords

Dragonfly; Genetic marker; Genome structure; Microsatellites; Molecular ecology; Odonata

Indexed keywords

ANISOPTERA (DRAGONFLIES); ODONATA;

EID: 72349084426     PISSN: 13887890     EISSN: 21596719     Source Type: Journal    
DOI: 10.1080/13887890.2009.9748345     Document Type: Article

References (57)

1. Amos, W., 1999. “ A comparative approach to the study of microsatellite evolution. ”. In “Microsatellites:evolution and applications” Edited by:Goldstein, D. B., and Schlötterer, C., 66–79. Oxford:Oxford University Press.
2. Bachtrog, D., Agis, M., Imhof, M., and Schlötterer, C., 2000. Microsatellite variability differs between dinucleotide repeat motifs - evidence from Drosophila melanogaster. Molecular Biology and Evolution, 17:1277–1285.
3. Brooker, A. L., Cook, D., Bentzen, P., Wright, J. M., and Doyle, R. W., 1994. Organization of microsatellites differs between mammals and cold-water teleosts. Canadian Journal of Fisheries and Aquatic Sciences, 51:1959–1965.
4. Lorenzo Carballa, M. O., Giere, S., Cordero, A., and Hadrys, H., 2007. Isolation and characterization of microsatellite loci to study parthenogenesis in the citrine forktail, Ischnura hastata (Odonata:Coenagrionidae). Molecular Ecology Notes, 7:839–841.
5. Chaput-Bardy, A., Lemaire, C., Picard, D., and Secondi, J., 2008. In-stream and overland dispersal across a river network influences gene flow in a freshwater insect, Calopteryx splendens. Molecular Ecology, 17:3496–3505.
6. Cooper, G., Miller, P. L., and Holland, P. W.H., 1996. Molecular genetic analysis of sperm competition in the damselfly Ischnura elegans (Vander Linden). Proceedings of the Royal Society of London (B), 263:1343–1349.
7. Cunha, H. A., and Watts, P. C., 2007. Twelve polymorphic microsatellite loci for marine and riverine tucuxi dolphins (Sotalia fluviatilis S. guayanensis). Molecular Ecology Notes, 7:1229–1231.
8. Dewick, S., and Gerussi, R., 2000. Small red-eyed damselfly Erythromma viridulum (Charpentier) found breeding in Essex - the first British records. Atropos, 9:3–4.
9. Di Rienzo, A., Peterson, A. C., Garza, J. C., Valdes, A. M., Slatkin, M., and Freimer, N. B., 1994. Mutational processes of simple-sequence repeat loci in human populations. Proceedings of the National Academy of Sciences, USA, 91:3166–3170.
10. Ellegren, H., 2004. Microsatellites:simple sequences with complex evolution. Nature Reviews, Genetics, 5:435–445.
11. Ellegren, H., Moore, S., Robinson, N., Byrne, K., Ward, W., and Sheldon, B. C., 1997. Microsatellite evolution - a reciprocal study of repeat lengths at homologous loci in cattle and sheep. Molecular Biology and Evolution, 8:854–860.
12. Estoup, A., Garnery, L., Solignac, M., and Cornuet, J.-M., 1993. Microsatellite variation in honey bee (Apis mellifera L.) populations:hierarchical genetic structure and test of the infinite allele and stepwise mutation models. Genetics, 140:679–695.
13. Excoffier, L., and Heckel, G., 2006. Computer programs for population genetics data analysis:a survival guide. Nature Reviews Genetics, 7:745–758.
14. Fagerberg, A. J., Fulton, R. E., and Black, W. C., IV. 2001. Microsatellite loci are not abundant in all arthropod genomes:analyses in the hard tick, Ixodes scapularis and the yellow fever mosquito, Aedes aegypti. Insect Molecular Biology, 10:225–236.
15. Fincke, O. M., and Hadrys, H., 2001. Unpredictable offspring survivorship in the damselfly, Megaloprepus coerulatus, shapes parental behavior, constrains sexual selection, and challenges traditional fitness estimates. Evolution, 55:762–772.
16. Frankham, R., Ballou, J. D., and Briscoe, D. A., 2002. Introduction to conservation genetics. Cambridge:Cambridge University Press.
17. Galbusera, P., van Dongen, S., and Matthysen, E., 2000. Cross-species amplification of microsatellite primers in passerine birds. Conservation Genetics, 1:163–168.
18. Giere, S., and Hadrys, H., 2006. Polymorphic microsatellite loci to study population dynamics of a dragonfly, the libellulid Trithemis arteriosa (Burmeister, 1839). Molecular Ecology Notes, 6:933–935.
19. Hadrys, H., Schroth, W., Schierwater, B., Streit, B., and Fincke, O. M., 2005. Tree hole odonates as environmental monitors:non-invasive isolation of polymorphic microsatellites from the neotropical damselfly Megaloprepus caerulatus. Conservation Genetics, 6:481–483.
20. Hadrys, H., Timm, J., Streit, B., and Giere, S., 2007a. A panel of microsatellite markers to study sperm precedence patterns in the emperor dragonfly Anax imperator (Odonata:Anisoptera). Molecular Ecology Notes, 7:296–298.
21. Hadrys, H., Wargel, A., Giere, S., Kraus, B., and Streit, B., 2007b. A panel of microsatellite markers to detect and monitor demographic bottlenecks in the riverine dragonfly Orthetrum coerulescens F. Molecular Ecology Notes, 7:287–289.
22. Harr, B., Zangerl, B., Brem, G., and Schlötterer, C., 1998. Conservation of locus-specific microsatellite variability across species:a comparison of two Drosophila sibling species, D. melanogaster D. simulans. Molecular Biology and Evolution, 15:176–184.
23. Harr, B., Todorova, J., and Schlötterer, C., 2002. Mismatch repair driven mutational bias in D. melanogaster. Molecular Cell, 10:199–205.
24. Huang, Q., Xu, F., Shen, H., Deng, Q., and Liu, Y., 2002. Mutation patterns at dinucleotide microsatellite loci in humans. American Journal of Human Genetics, 70:625–634.
25. Hughes, C. R., and Queller, D. C., 1993. Detection of highly polymorphic microsatellite loci in a species with little allozyme polymorphism. Molecular Ecology, 2:131–137.
26. Jones, B. R., Bogdanowicz, S. M., and Jordan, S., 2009. Isolation and characterization of 16 polymorphic microsatellite loci in the endemie Hawaiian damselfly Megalagrion xanthomelas (Odonata:Coenagrionidae). Molecular Ecology Resources, 9:165–167.
27. Katti, M. V., Ranjekar, P. K., and Gupta, V. S., 2001. Differential distribution of simple sequence repeats in eukaryotic genome sequences. Molecular Biology and Evolution, 18:1161–1167.
28. Keat, S., 2007. Range expansion, population structure and life history of the small red-eyed damselfly Erythromma viridulum (Charpentier, 1840) at its northwest margin. PhD Thesis University of Liverpool.
29. Keat, S., Thompson, D. J., Kemp, S. J., and Watts, P. C., 2005. Ten microsatellite loci for the Small Redeyed Damselfly Erythromma viridulum (Charpentier). Molecular Ecology Notes, 5:788–790.
30. Ketelaar, R., 2002. The recent expansion of the Small Red-eyed Damselfly Erythromma viridulum (Charpentier) in The Netherlands. The Journal of the British Dragonfly Society, 18:1–9.
31. Lagercrantz, U., Ellegren, H., and Andersson, L., 1993. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Research, 21:1111–1115.
32. Lowe, C. D., Kemp, S. J., Harvey, I. F., Thompson, D. J., and Watts, P. C., 2007. Variable microsatellite loci isolated from the azure damselfly, Coenagrion puella (L.) (Zygoptera; Coenagrionidae). Molecular Ecology Notes, 7:880–882.
33. Lowe, C. D., Harvey, I. F., Thompson, D. J., and Watts, P. C., 2008. Strong genetic divergence indicates that congeneric damselflies Coenagrion puella C. pulchellum (Odonata:Zygoptera:Coenagrionidae) do not hybridise. Hydrobiologia, 605:55–63.
34. Lowe, C. D., Harvey, I. F., Watts, P. C., and Thompson, D. J., 2009. Reproductive timing and patterns of development in for the damselfly Coenagrion puella in the field. Ecology, 90:2202–2212.
35. Mardis, E. R., 2008. Next-generation DNA sequencing methods. Annual Review of Genomics and Human Genetics, 9:387–402.
36. Matthews, J. H., Boles, S., Parmesan, C., and Thomas, J., 2007. Isolation and characterization of nuclear microsatellite loci for the common green darner dragonfly Anax junius (Odonata:Aeshnidae) to constrain patterns of phenotypic and spatial diversity. Molecular Ecology Notes, 7:845–847.
37. Ohta, T., and Kimura, M., 1973. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genetical Research, 22:201–204.
38. Prasad, M. D., Muthulakshmi, M., Madhu, M., Archak, S., Mita, K., and Nagaraju, J., 2005. Survey and analysis of microsatellites in the silkworm, Bombyx mori:frequency, distribution, mutations, marker potential and their conservation in heterologous species. Genetics, 169:197–214.
39. Primmer, C. R., Raudsepp, T., Chowdhary, B. P., Møller, A. P., and Ellegren, H., 1997. Low frequency of microsatellites in the avian genome. Genome Research, 7:471–482.
40. Schug, M. D., Hutter, C. M., Wetterstrand, K. A., Gaudette, M. S., Mackay, T. F., and Aquadro, C. F., 1998. The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster. Molecular Biology and Evolution, 15:1751–1760.
41. Schlötterer, C., 2004. The evolution of molecular markers - just a matter of fashion? Nature Reviews Genetics, 5:63–68.
42. Schlötterer, C., Ritter, R., Harr, G., and Brem, G., 1998. High mutation rates of a long microsatellite allele in Drosophila melanogaster provide evidence for allele-specific mutation rates. Molecular Biology and Evolution, 15:1269–1274.
43. Selkoe, K. A., and Toonen, R. J., 2006. Microsatellites for ecologists:a practical guide to using and evaluating microsatellite markers. Ecology Letters, 9:615–629.
44. Sunnucks, P., 2000. Efficient genetic markers for population biology. Trends in Ecology and Evolution, 15:199–202.
45. Svensson, E. I., Kristoffersen, L., Oskarsson, K., and Bensch, S., 2004. Molecular population divergence on morphology in the banded demoiselle (Calopteryx splendens). Heredity, 93:423–433.
46. Thompson, D. J., Rouquette, J. R., and Purse, B. V., 2003. Ecology of the southern damselfly, Coenagrion mercuriale. Conserving Natura 2000 Rivers Ecology Series No. 8 Peterborough:English Nature.
47. Thompson, D. J., Watts, P. C., and Saccheri, I. J., 2007. “ 12. Conservation genetics for insects. ”. In “Insect conservation biology” Edited by:Stewart, A. J.A., New, T. R., and Lewis, O. T., 280–300. Wallingford:CABI Publishing.
48. Tóth, G., Gôspári, Z., and Jurka, J., 2000. Microsatellites in different eukaryotic genomes:survey and analysis. Genome Research, 10:967–981.
49. van Oosterhout, C., Hutchinson, B., Wills, D., and Shipley, P., 2003. Microchecker, microsatellite data checking software. Available from < http://www.microchecker.hull.ac.uk>.
50. Watts, P. C., Rouquette, J. R., Saccheri, I. J., Kemp, S. J., and Thompson, D. J., 2004a. Molecular and ecological evidence for small-scale isolation by distance in an endangered damselfly, Coenagrion mercuriale. Molecular Ecology, 13:2931–2945.
51. Watts, P. C., Thompson, D. J., and Kemp, S. J., 2004b. Cross-species amplification of microsatellite loci in some European zygopteran species (Odonata:Coenagrionidae). International Journal of Odonatology, 7:87–96.
52. Watts, P. C., Wu, J. H., Westgarth, C., Thompson, D. J., and Kemp, S. J., 2004c. A panel of microsatellite loci for the southern damselfly, Coenagrion mercuriale (Odonata:Coenagrionidae). Conservation Genetics, 5:117–119.
53. Watts, P. C., Saccheri, I. J., Kemp, S. J., and Thompson, D. J., 2006. Population structure and the impact of regional and local habitat isolation upon levels of genetic diversity of the endangered damselfly Coenagrion mercuriale (Odonata:Zygoptera). Freshwater Biology, 51:193–205.
54. Watts, P. C., Rousset, F., Saccheri, I. J., Leblois, R., Kemp, S. J., and Thompson, D. J., 2007a. Compatible genetic and ecological estimates of dispersal rates in insect (Coenagrion mercuriale:Odonata:Zygoptera) populations:analysis of ‘neighbourhood size’ using a more precise estimator. Molecular Ecology, 16:737–751.
55. Watts, P. C., Saccheri, I. J., Kemp, S. J., and Thompson, D. J., 2007b. Effective population sizes and migration rates in fragmented populations of an endangered insect (Coenagrion mercuriale:Odonata). Journal of Animal Ecology, 76:790–800.
56. Wilder, J. A., Diaz, T., O'Neill, R. J.W., Kenney, J., and Hollocher, H., 2002. Characterisation and isolation of novel microsatellites from the Drosophila dunni subgroup. Genetics Research Cambridge, 80:177–185.
57. Xu, X., Peng, M., Fang, Z., and Xu, X., 2000. The direction of microsatellite mutation is dependent upon allele length. Nature Genetics, 24:396–399.